Homology
BLAST of mRNA_C-linearis_contig10.533.1 vs. uniprot
Match:
D7FZW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW0_ECTSI)
HSP 1 Score: 82.4 bits (202), Expect = 7.310e-16
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = -3
Query: 41 RDGEEELEYSSLSSVRVVRGPSLAELEKRKEALHKWSSLGPGGGIFAG 184
R+GEEELEYSSL++VRVVRGPS+ ELEKRK+ALHKW+SLGPGGGI G
Sbjct: 367 REGEEELEYSSLANVRVVRGPSMGELEKRKQALHKWNSLGPGGGILGG 414
BLAST of mRNA_C-linearis_contig10.533.1 vs. uniprot
Match:
A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)
HSP 1 Score: 79.0 bits (193), Expect = 1.290e-14
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = -3
Query: 38 RDGEEELEYSSLSSVRVVRGPSLAELEKRKEALHKWSSLGPGGGIFAGS 184
R+GEEELEYSSL++VRVVRGPS+ EL+KRK+AL KW+SLGPGGGI GS
Sbjct: 828 REGEEELEYSSLANVRVVRGPSMGELKKRKQALQKWNSLGPGGGILGGS 876
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.533.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 7.31e-16 / Id = 81.25 Expect = 1.29e-14 / Id = 77.55 Sequence D7FZW0_ECTSI A0A6H5L4H0_9PHAE
Match Name E-value Identity Description
D7FZW0_ECTSI 7.310e-16 81.25 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5L4H0_9PHAE 1.290e-14 77.55 Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 376 Cds size 375 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927325.817757-CDS-C-linearis_contig10:2022638..2023013 1622927325.817757-CDS-C-linearis_contig10:2022638..2023013 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 2022639..2023013 + 1690879627.6964526-CDS-C-linearis_contig10:2022638..2023013 1690879627.6964526-CDS-C-linearis_contig10:2022638..2023013 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 2022639..2023013 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.533.1
>prot_C-linearis_contig10.533.1 ID=prot_C-linearis_contig10.533.1|Name=mRNA_C-linearis_contig10.533.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=125bp
RRRWHSSLHPRPPTPRRCHRRAPVSSTCGAPPCASPARPARGPARRERSR back to top mRNA from alignment at C-linearis_contig10:2022639..2023013+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.533.1 ID=mRNA_C-linearis_contig10.533.1|Name=mRNA_C-linearis_contig10.533.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=375bp|location=Sequence derived from alignment at C-linearis_contig10:2022639..2023013+ (Chordaria linearis ClinC8C monoicous)CGGCGGCGGTGGCATTCTTCTTTGCACCCCCGCCCCCCGACCCCGCGAAG
ATGCCACCGCCGGGCCCCAGTGAGCTCCACTTGTGGAGCGCCTCCTTGCG
CTTCTCCAGCTCGGCCAGCGAGGGGCCCCGCACGACGCGAACGCTCGAGA
GGGAGCTGTACTCGAGCTCCTCCTCGCCGTCGCGTCCGGCACTGCCGCCG
CTGCTTCTGTCGCCGCCGCTGTGGTGAGCCTCGCTTTCCTCGGCAGCGAA
AGCCGCAGCGACGGATGCTTTCATCCGCTCCGCCGGGCCGGACACGCGCC
AGCTTTCCTCGTCTGTCGGATCTTTTGCGCCGCCATAGCCCGTCGTGCCC
GTTTCTATCCCTCCTCCTCCTACTA back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2022639..2023013+
>mRNA_C-linearis_contig10.533.1 ID=mRNA_C-linearis_contig10.533.1|Name=mRNA_C-linearis_contig10.533.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at C-linearis_contig10:2022639..2023013+ (Chordaria linearis ClinC8C monoicous) back to top