mRNA_C-linearis_contig10.533.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.533.1
Unique NamemRNA_C-linearis_contig10.533.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.533.1 vs. uniprot
Match: D7FZW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW0_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 7.310e-16
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = -3 
Query:   41 RDGEEELEYSSLSSVRVVRGPSLAELEKRKEALHKWSSLGPGGGIFAG 184
            R+GEEELEYSSL++VRVVRGPS+ ELEKRK+ALHKW+SLGPGGGI  G
Sbjct:  367 REGEEELEYSSLANVRVVRGPSMGELEKRKQALHKWNSLGPGGGILGG 414
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BLAST of mRNA_C-linearis_contig10.533.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.290e-14
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = -3 
Query:   38 RDGEEELEYSSLSSVRVVRGPSLAELEKRKEALHKWSSLGPGGGIFAGS 184
            R+GEEELEYSSL++VRVVRGPS+ EL+KRK+AL KW+SLGPGGGI  GS
Sbjct:  828 REGEEELEYSSLANVRVVRGPSMGELKKRKQALQKWNSLGPGGGILGGS 876
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZW0_ECTSI7.310e-1681.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4H0_9PHAE1.290e-1477.55Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2022639..2023013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size376
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.817757-CDS-C-linearis_contig10:2022638..20230131622927325.817757-CDS-C-linearis_contig10:2022638..2023013Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2022639..2023013 +
1690879627.6964526-CDS-C-linearis_contig10:2022638..20230131690879627.6964526-CDS-C-linearis_contig10:2022638..2023013Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2022639..2023013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.533.1prot_C-linearis_contig10.533.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2022639..2023013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.533.1

>prot_C-linearis_contig10.533.1 ID=prot_C-linearis_contig10.533.1|Name=mRNA_C-linearis_contig10.533.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=125bp
RRRWHSSLHPRPPTPRRCHRRAPVSSTCGAPPCASPARPARGPARRERSR
GSCTRAPPRRRVRHCRRCFCRRRCGEPRFPRQRKPQRRMLSSAPPGRTRA
SFPRLSDLLRRHSPSCPFLSLLLLL
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mRNA from alignment at C-linearis_contig10:2022639..2023013+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.533.1 ID=mRNA_C-linearis_contig10.533.1|Name=mRNA_C-linearis_contig10.533.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=375bp|location=Sequence derived from alignment at C-linearis_contig10:2022639..2023013+ (Chordaria linearis ClinC8C monoicous)
CGGCGGCGGTGGCATTCTTCTTTGCACCCCCGCCCCCCGACCCCGCGAAG
ATGCCACCGCCGGGCCCCAGTGAGCTCCACTTGTGGAGCGCCTCCTTGCG
CTTCTCCAGCTCGGCCAGCGAGGGGCCCCGCACGACGCGAACGCTCGAGA
GGGAGCTGTACTCGAGCTCCTCCTCGCCGTCGCGTCCGGCACTGCCGCCG
CTGCTTCTGTCGCCGCCGCTGTGGTGAGCCTCGCTTTCCTCGGCAGCGAA
AGCCGCAGCGACGGATGCTTTCATCCGCTCCGCCGGGCCGGACACGCGCC
AGCTTTCCTCGTCTGTCGGATCTTTTGCGCCGCCATAGCCCGTCGTGCCC
GTTTCTATCCCTCCTCCTCCTACTA
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Coding sequence (CDS) from alignment at C-linearis_contig10:2022639..2023013+

>mRNA_C-linearis_contig10.533.1 ID=mRNA_C-linearis_contig10.533.1|Name=mRNA_C-linearis_contig10.533.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at C-linearis_contig10:2022639..2023013+ (Chordaria linearis ClinC8C monoicous)
CGGCGGCGGTGGCATTCTTCTTTGCACCCCCGCCCCCCGACCCCGCGAAG
ATGCCACCGCCGGGCCCCAGTGAGCTCCACTTGTGGAGCGCCTCCTTGCG
CTTCTCCAGCTCGGCCAGCGAGGGGCCCCGCACGACGCGAACGCTCGAGA
GGGAGCTGTACTCGAGCTCCTCCTCGCCGTCGCGTCCGGCACTGCCGCCG
CTGCTTCTGTCGCCGCCGCTGTGGTGAGCCTCGCTTTCCTCGGCAGCGAA
AGCCGCAGCGACGGATGCTTTCATCCGCTCCGCCGGGCCGGACACGCGCC
AGCTTTCCTCGTCTGTCGGATCTTTTGCGCCGCCATAGCCCGTCGTGCCC
GTTTCTATCCCTCCTCCTCCTACTACGGCGGCGGTGGCATTCTTCTTTGC
ACCCCCGCCCCCCGACCCCGCGAAGATGCCACCGCCGGGCCCCAGTGAGC
TCCACTTGTGGAGCGCCTCCTTGCGCTTCTCCAGCTCGGCCAGCGAGGGG
CCCCGCACGACGCGAACGCTCGAGAGGGAGCTGTACTCGAGCTCCTCCTC
GCCGTCGCGTCCGGCACTGCCGCCGCTGCTTCTGTCGCCGCCGCTGTGGT
GAGCCTCGCTTTCCTCGGCAGCGAAAGCCGCAGCGACGGATGCTTTCATC
CGCTCCGCCGGGCCGGACACGCGCCAGCTTTCCTCGTCTGTCGGATCTTT
TGCGCCGCCATAGCCCGTCGTGCCCGTTTCTATCCCTCCTCCTCCTACTA
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