mRNA_C-linearis_contig10.531.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.531.1
Unique NamemRNA_C-linearis_contig10.531.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:1875303..1875969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size667
Cds size432
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.7776887-UTR-C-linearis_contig10:1875302..18755371622927325.7776887-UTR-C-linearis_contig10:1875302..1875537Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1875303..1875537 +
1690879627.6613872-UTR-C-linearis_contig10:1875302..18755371690879627.6613872-UTR-C-linearis_contig10:1875302..1875537Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1875303..1875537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.7866733-CDS-C-linearis_contig10:1875537..18759691622927325.7866733-CDS-C-linearis_contig10:1875537..1875969Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1875538..1875969 +
1690879627.6705778-CDS-C-linearis_contig10:1875537..18759691690879627.6705778-CDS-C-linearis_contig10:1875537..1875969Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1875538..1875969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.531.1prot_C-linearis_contig10.531.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 1875538..1875969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.531.1

>prot_C-linearis_contig10.531.1 ID=prot_C-linearis_contig10.531.1|Name=mRNA_C-linearis_contig10.531.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=144bp
MRSNAISRFLGSQATLNFRIHAPKPSTAFPWKIQQPARPTAASQAAAPHH
ACGSGTALFASKKNKQKKPQTVTRRTRSCHPDQTTTPSPASNRSNKSSNA
FSPDIQSPLSSTSQLQLPARPMVPKPNTVAWVQRETTYPTLDPA
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mRNA from alignment at C-linearis_contig10:1875303..1875969+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.531.1 ID=mRNA_C-linearis_contig10.531.1|Name=mRNA_C-linearis_contig10.531.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=667bp|location=Sequence derived from alignment at C-linearis_contig10:1875303..1875969+ (Chordaria linearis ClinC8C monoicous)
AGATGGGTATTTTTATATATTTTTTGTTCATGTGCGATTACCGGCGAGAA
GGGACTGGTCACGTTACAGCCTCACGCGGTTGATGCTTCAGCAGCAGAAC
AACTTCAACAGCACTCTGCTATTGCACACCCCAAGATGAAGCAGTAGCAG
TAACACAATAGCTTTCACCTGCCATTGGCAGGTATATCGGCAGGTGCGGG
CGGATCGTGCACCTAACTCGCAACACGAGAATCGCATGAGAAGTAACGCC
ATTTCGCGGTTTCTTGGTTCCCAGGCAACGTTAAATTTCCGAATACATGC
ACCCAAACCAAGCACTGCTTTTCCATGGAAAATTCAACAACCGGCCCGAC
CCACAGCAGCATCACAAGCAGCAGCACCACATCACGCGTGCGGATCAGGG
ACAGCCTTGTTTGCCAGCAAAAAAAACAAACAAAAAAAGCCACAAACGGT
GACACGACGAACACGATCATGCCATCCCGACCAAACCACGACCCCATCAC
CCGCATCAAACCGAAGTAACAAGAGCTCCAATGCCTTTTCACCCGACATC
CAAAGCCCCCTTTCTTCAACCAGCCAGCTCCAACTTCCCGCAAGACCTAT
GGTCCCGAAACCAAACACGGTGGCCTGGGTACAAAGAGAAACAACGTACC
CCACCCTTGACCCCGCC
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Coding sequence (CDS) from alignment at C-linearis_contig10:1875303..1875969+

>mRNA_C-linearis_contig10.531.1 ID=mRNA_C-linearis_contig10.531.1|Name=mRNA_C-linearis_contig10.531.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at C-linearis_contig10:1875303..1875969+ (Chordaria linearis ClinC8C monoicous)
ATGAGAAGTAACGCCATTTCGCGGTTTCTTGGTTCCCAGGCAACGTTAAA
TTTCCGAATACATGCACCCAAACCAAGCACTGCTTTTCCATGGAAAATTC
AACAACCGGCCCGACCCACAGCAGCATCACAAGCAGCAGCACCACATCAC
GCGTGCGGATCAGGGACAGCCTTGTTTGCCAGCAAAAAAAACAAACAAAA
AAAGCCACAAACGGTGACACGACGAACACGATCATGCCATCCCGACCAAA
CCACGACCCCATCACCCGCATCAAACCGAAGTAACAAGAGCTCCAATGCC
TTTTCACCCGACATCCAAAGCCCCCTTTCTTCAACCAGCCAGCTCCAACT
TCCCGCAAGACCTATGGTCCCGAAACCAAACACGGTGGCCTGGGTACAAA
GAGAAACAACGTACCCCACCCTTGACCCCGCCATGAGAAGTAACGCCATT
TCGCGGTTTCTTGGTTCCCAGGCAACGTTAAATTTCCGAATACATGCACC
CAAACCAAGCACTGCTTTTCCATGGAAAATTCAACAACCGGCCCGACCCA
CAGCAGCATCACAAGCAGCAGCACCACATCACGCGTGCGGATCAGGGACA
GCCTTGTTTGCCAGCAAAAAAAACAAACAAAAAAAGCCACAAACGGTGAC
ACGACGAACACGATCATGCCATCCCGACCAAACCACGACCCCATCACCCG
CATCAAACCGAAGTAACAAGAGCTCCAATGCCTTTTCACCCGACATCCAA
AGCCCCCTTTCTTCAACCAGCCAGCTCCAACTTCCCGCAAGACCTATGGT
CCCGAAACCAAACACGGTGGCCTGGGTACAAAGAGAAACAACGTACCCCA
CCCTTGACCCCGCC
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