mRNA_C-linearis_contig10.519.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig10.519.1
Unique Name	mRNA_C-linearis_contig10.519.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5KRF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.940e-30
Identity = 60/129 (46.51%), Postives = 79/129 (61.24%), Query Frame = 2

Query:    5 GGYQGAYYPRRVMNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDWHISRMQGR 388
            GGY G     RVM +ED+  EDE  EF +VY++   A   T     DCPF+ W+   E KD+ R+ FG RCLNCG + HFVR+C+K ++N S MLN  +  G++ EV  R  RWL+RLR W   RM+ R
Sbjct:  227 GGYGG-----RVMTVEDMDYEDECAEFQRVYDI--HAAPRTNSQATDCPFFAWFTSVEEKDRHRRAFGLRCLNCGSEGHFVRDCDKGYINASNMLNKNLATGSKAEVKARWDRWLHRLRQWQAHRMEER 348

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BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5KBL4_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.360e-28
Identity = 60/129 (46.51%), Postives = 79/129 (61.24%), Query Frame = 2

Query:    5 GGYQGAYYPRRVMNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDWHISRMQGR 388
            GGY G     RVM +ED+  EDE  EF +VY++   A   T     DCPF+ W+   E KD+ RQ FG RCLNCG + HFVR+C+K ++N S MLN  +   ++ EV  R  RWL+RLR W  +RM+ R
Sbjct:  426 GGYGG-----RVMTVEDMDYEDECAEFKRVYDI--HAAPRTNSQATDCPFFAWFTSVEEKDRHRQAFGLRCLNCGSEGHFVRDCDKGYINTSNMLNKNLATESKAEVKARWDRWLHRLRQWQSNRMEER 547

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BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.460e-28
Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 2

Query:    5 GGYQGAYYPRRVMNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDW 364
            G   G Y  RRVM +ED+  ED+ +EF +VY +    +  T     DCPF+ W+   E KD+ R+ FG+RCLNCG +  FVR+C K ++N S MLN  +  G++ EV  R  RWLNRL+ W
Sbjct:  168 GRSDGGYGGRRVMTVEDMDYEDKCEEFKRVYGIHSSPR--TNSQVNDCPFFAWFTSVEEKDRHRRAFGSRCLNCGSEGQFVRDCVKGYINASSMLNRNLANGSKAEVKARWDRWLNRLQQW 286

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BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5K1N6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N6_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.390e-26
Identity = 57/123 (46.34%), Postives = 79/123 (64.23%), Query Frame = 2

Query:   14 QGAYYPRRVMNIEDLLEDENDEFHQVYNVTGFAKQFTTGNRRDC--PFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDWHISR 376
            QGA    RVMNI + +EDE  EF +V+ V   A Q+  G   +   PFY  ++ R+ +D+ARQ +G +CLNCG+ +HFVR C  PF+N S MLN ++G+G  + V +R  +WL RLRDWH  R
Sbjct:  721 QGA----RVMNIHEEMEDEEKEFKKVHYV---ATQWEKGKGDESYIPFYTRFDSRKEQDEARQAYGLKCLNCGDQSHFVRECTHPFINKSNMLNPELGQGPPQLVKERWSKWLKRLRDWHEQR 836

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BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: D7G674_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 7.040e-17
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 2

Query:    5 GGYQGAYYPRRVMNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFM 268
            G   G Y  RRVM ++++  EDE  EF +VY++       T    +DCPF+ W+   E KD+ R+ FG+RCL CG + HFVR+C+K ++
Sbjct:  164 GRLDGGYGGRRVMTVDEVDCEDECAEFQRVYDI--HVSPRTNSQMKDCPFFAWFTSVEEKDRHRRAFGSRCLKCGSEGHFVRDCDKGYI 250

[Close]

BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5KNG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG1_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.500e-13
Identity = 45/119 (37.82%), Postives = 62/119 (52.10%), Query Frame = 2

Query:   14 QGAYYPRRVMNIEDLLEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCG--EDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDW 364
            QG+   R VM +    +DE+ EF QV  V+   K F   N  D PFY  +   + +D+AR+EFG +CLNCG  E  H  R C    MNVS +++  +  G  + V    +RW  RL  W
Sbjct:  254 QGSAGARAVMTVAQY-DDESREFWQVSQVSRGNKGFGR-NDDDPPFYVQFTNNKERDRARREFGPKCLNCGVEEPFHLARECPDKLMNVSGLIHPDIAVGDPETVEKNWRRWQQRLCSW 370

[Close]

BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5JHS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.960e-13
Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 2

Query:   62 EDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCG--EDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDW 364
            +DE+ EF QV  V+   K F   N  D PFY  +   + +D+AR+EFG +CLNCG  E  H  R C    MNVS +++  +  G  + V    +RW  RL  W
Sbjct:    7 DDESREFWQVSQVSRGNKGFGL-NDDDPPFYVQFTNNQERDRARREFGPKCLNCGVEEPFHLARECPDKLMNVSGLIHPDIAVGDPETVEKNWRRWQQRLCSW 108

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot

BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5KRF6_9PHAE	3.940e-30	46.51	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KBL4_9PHAE	1.360e-28	46.51	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5K0Q4_9PHAE	2.460e-28	44.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K1N6_9PHAE	2.390e-26	46.34	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
D7G674_ECTSI	7.040e-17	41.57	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KNG1_9PHAE	2.500e-13	37.82	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JHS6_9PHAE	3.960e-13	38.83	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig10	contig	C-linearis_contig10:1716902..1717377 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	476
Cds size	354
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig10.519.1	prot_C-linearis_contig10.519.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig10 1716942..1717295 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927337.3643858-UTR-C-linearis_contig10:1716901..1716941	1622927337.3643858-UTR-C-linearis_contig10:1716901..1716941	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig10 1716902..1716941 +
1690879635.0345757-UTR-C-linearis_contig10:1716901..1716941	1690879635.0345757-UTR-C-linearis_contig10:1716901..1716941	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig10 1716902..1716941 +
1622927337.386442-UTR-C-linearis_contig10:1717295..1717377	1622927337.386442-UTR-C-linearis_contig10:1717295..1717377	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig10 1717296..1717377 +
1690879635.0560088-UTR-C-linearis_contig10:1717295..1717377	1690879635.0560088-UTR-C-linearis_contig10:1717295..1717377	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig10 1717296..1717377 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927337.3745317-CDS-C-linearis_contig10:1716941..1717295	1622927337.3745317-CDS-C-linearis_contig10:1716941..1717295	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig10 1716942..1717295 +
1690879635.0450552-CDS-C-linearis_contig10:1716941..1717295	1690879635.0450552-CDS-C-linearis_contig10:1716941..1717295	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig10 1716942..1717295 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig10:1716902..1717377+
coding sequence from alignment at C-linearis_contig10:1716902..1717377+

protein sequence of mRNA_C-linearis_contig10.519.1

>prot_C-linearis_contig10.519.1 ID=prot_C-linearis_contig10.519.1|Name=mRNA_C-linearis_contig10.519.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=118bp
MNIEDLLEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKA
RQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQR
WLNRLRDWHISRMQGRN*

mRNA from alignment at C-linearis_contig10:1716902..1717377+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig10.519.1 ID=mRNA_C-linearis_contig10.519.1|Name=mRNA_C-linearis_contig10.519.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=476bp|location=Sequence derived from alignment at C-linearis_contig10:1716902..1717377+ (Chordaria linearis ClinC8C monoicous)
GGGGGGTGGTTACCAAGGGGCGTACTACCCAAGGCGTGTGATGAACATTG
AGGATTTGTTGGAAGACGAGAACGACGAATTCCATCAAGTGTACAACGTT
ACCGGCTTCGCTAAGCAGTTCACCACCGGGAACAGACGCGATTGTCCGTT
CTATAAGTGGTATGAGCAGAGGGAACTCAAGGACAAGGCCCGCCAAGAGT
TTGGGGCGCGGTGCTTGAATTGTGGTGAGGACAACCACTTCGTGCGTAAC
TGCAACAAACCATTCATGAACGTCTCAAAAATGCTCAACGACAAGATGGG
CGAAGGCACAGAAAAAGAGGTGCATGACCGGCTACAAAGGTGGTTGAACC
GCTTGCGTGACTGGCACATTTCTCGCATGCAAGGGCGTAACTGAAGGTGC
GACGGTCGTTTGGCCAGCACGCCGGAAGCATCTAGGCCGTCTGCCTTGTG
GGGTACAGGAAAGAAACCACGAGTGG

Coding sequence (CDS) from alignment at C-linearis_contig10:1716902..1717377+

>mRNA_C-linearis_contig10.519.1 ID=mRNA_C-linearis_contig10.519.1|Name=mRNA_C-linearis_contig10.519.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at C-linearis_contig10:1716902..1717377+ (Chordaria linearis ClinC8C monoicous)
ATGAACATTGAGGATTTGTTGGAAGACGAGAACGACGAATTCCATCAAGT
GTACAACGTTACCGGCTTCGCTAAGCAGTTCACCACCGGGAACAGACGCG
ATTGTCCGTTCTATAAGTGGTATGAGCAGAGGGAACTCAAGGACAAGGCC
CGCCAAGAGTTTGGGGCGCGGTGCTTGAATTGTGGTGAGGACAACCACTT
CGTGCGTAACTGCAACAAACCATTCATGAACGTCTCAAAAATGCTCAACG
ACAAGATGGGCGAAGGCACAGAAAAAGAGGTGCATGACCGGCTACAAAGG
TGGTTGAACCGCTTGCGTGACTGGCACATTTCTCGCATGCAAGGGCGTAA
CTGAATGAACATTGAGGATTTGTTGGAAGACGAGAACGACGAATTCCATC
AAGTGTACAACGTTACCGGCTTCGCTAAGCAGTTCACCACCGGGAACAGA
CGCGATTGTCCGTTCTATAAGTGGTATGAGCAGAGGGAACTCAAGGACAA
GGCCCGCCAAGAGTTTGGGGCGCGGTGCTTGAATTGTGGTGAGGACAACC
ACTTCGTGCGTAACTGCAACAAACCATTCATGAACGTCTCAAAAATGCTC
AACGACAAGATGGGCGAAGGCACAGAAAAAGAGGTGCATGACCGGCTACA
AAGGTGGTTGAACCGCTTGCGTGACTGGCACATTTCTCGCATGCAAGGGC
GTAACTGA