mRNA_C-linearis_contig10.519.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5KRF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE) HSP 1 Score: 121 bits (303), Expect = 3.940e-30 Identity = 60/129 (46.51%), Postives = 79/129 (61.24%), Query Frame = 2 Query: 5 GGYQGAYYPRRVMNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDWHISRMQGR 388 GGY G RVM +ED+ EDE EF +VY++ A T DCPF+ W+ E KD+ R+ FG RCLNCG + HFVR+C+K ++N S MLN + G++ EV R RWL+RLR W RM+ R Sbjct: 227 GGYGG-----RVMTVEDMDYEDECAEFQRVYDI--HAAPRTNSQATDCPFFAWFTSVEEKDRHRRAFGLRCLNCGSEGHFVRDCDKGYINASNMLNKNLATGSKAEVKARWDRWLHRLRQWQAHRMEER 348
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5KBL4_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE) HSP 1 Score: 119 bits (299), Expect = 1.360e-28 Identity = 60/129 (46.51%), Postives = 79/129 (61.24%), Query Frame = 2 Query: 5 GGYQGAYYPRRVMNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDWHISRMQGR 388 GGY G RVM +ED+ EDE EF +VY++ A T DCPF+ W+ E KD+ RQ FG RCLNCG + HFVR+C+K ++N S MLN + ++ EV R RWL+RLR W +RM+ R Sbjct: 426 GGYGG-----RVMTVEDMDYEDECAEFKRVYDI--HAAPRTNSQATDCPFFAWFTSVEEKDRHRQAFGLRCLNCGSEGHFVRDCDKGYINTSNMLNKNLATESKAEVKARWDRWLHRLRQWQSNRMEER 547
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE) HSP 1 Score: 115 bits (287), Expect = 2.460e-28 Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 2 Query: 5 GGYQGAYYPRRVMNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDW 364 G G Y RRVM +ED+ ED+ +EF +VY + + T DCPF+ W+ E KD+ R+ FG+RCLNCG + FVR+C K ++N S MLN + G++ EV R RWLNRL+ W Sbjct: 168 GRSDGGYGGRRVMTVEDMDYEDKCEEFKRVYGIHSSPR--TNSQVNDCPFFAWFTSVEEKDRHRRAFGSRCLNCGSEGQFVRDCVKGYINASSMLNRNLANGSKAEVKARWDRWLNRLQQW 286
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5K1N6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N6_9PHAE) HSP 1 Score: 114 bits (284), Expect = 2.390e-26 Identity = 57/123 (46.34%), Postives = 79/123 (64.23%), Query Frame = 2 Query: 14 QGAYYPRRVMNIEDLLEDENDEFHQVYNVTGFAKQFTTGNRRDC--PFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDWHISR 376 QGA RVMNI + +EDE EF +V+ V A Q+ G + PFY ++ R+ +D+ARQ +G +CLNCG+ +HFVR C PF+N S MLN ++G+G + V +R +WL RLRDWH R Sbjct: 721 QGA----RVMNIHEEMEDEEKEFKKVHYV---ATQWEKGKGDESYIPFYTRFDSRKEQDEARQAYGLKCLNCGDQSHFVRECTHPFINKSNMLNPELGQGPPQLVKERWSKWLKRLRDWHEQR 836
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: D7G674_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 7.040e-17 Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 2 Query: 5 GGYQGAYYPRRVMNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFM 268 G G Y RRVM ++++ EDE EF +VY++ T +DCPF+ W+ E KD+ R+ FG+RCL CG + HFVR+C+K ++ Sbjct: 164 GRLDGGYGGRRVMTVDEVDCEDECAEFQRVYDI--HVSPRTNSQMKDCPFFAWFTSVEEKDRHRRAFGSRCLKCGSEGHFVRDCDKGYI 250
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5KNG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG1_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 2.500e-13 Identity = 45/119 (37.82%), Postives = 62/119 (52.10%), Query Frame = 2 Query: 14 QGAYYPRRVMNIEDLLEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCG--EDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDW 364 QG+ R VM + +DE+ EF QV V+ K F N D PFY + + +D+AR+EFG +CLNCG E H R C MNVS +++ + G + V +RW RL W Sbjct: 254 QGSAGARAVMTVAQY-DDESREFWQVSQVSRGNKGFGR-NDDDPPFYVQFTNNKERDRARREFGPKCLNCGVEEPFHLARECPDKLMNVSGLIHPDIAVGDPETVEKNWRRWQQRLCSW 370
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5JHS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS6_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 3.960e-13 Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 2 Query: 62 EDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCG--EDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDW 364 +DE+ EF QV V+ K F N D PFY + + +D+AR+EFG +CLNCG E H R C MNVS +++ + G + V +RW RL W Sbjct: 7 DDESREFWQVSQVSRGNKGFGL-NDDDPPFYVQFTNNQERDRARREFGPKCLNCGVEEPFHLARECPDKLMNVSGLIHPDIAVGDPETVEKNWRRWQQRLCSW 108 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.519.1 >prot_C-linearis_contig10.519.1 ID=prot_C-linearis_contig10.519.1|Name=mRNA_C-linearis_contig10.519.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=118bp MNIEDLLEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKAback to top mRNA from alignment at C-linearis_contig10:1716902..1717377+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.519.1 ID=mRNA_C-linearis_contig10.519.1|Name=mRNA_C-linearis_contig10.519.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=476bp|location=Sequence derived from alignment at C-linearis_contig10:1716902..1717377+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1716902..1717377+ >mRNA_C-linearis_contig10.519.1 ID=mRNA_C-linearis_contig10.519.1|Name=mRNA_C-linearis_contig10.519.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at C-linearis_contig10:1716902..1717377+ (Chordaria linearis ClinC8C monoicous)back to top |