mRNA_C-linearis_contig10.518.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.518.1
Unique NamemRNA_C-linearis_contig10.518.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: D7FZW6_ECTSI (Complex I intermediate-associated protein 30, mitochondrial (NADH dehydrogenase [ubiquinon) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW6_ECTSI)

HSP 1 Score: 455 bits (1170), Expect = 2.820e-156
Identity = 224/300 (74.67%), Postives = 250/300 (83.33%), Query Frame = 3 
Query:   57 MARIVRTYRKYWPTDAILKGKVVLEDLMLCSFSSKELTEGWAVTTDQRWGGKSTATVSWKPWERLTGADPTASATRGGDPSSDAGAG---ALDAQPWELYEGSPDTAAPRGVLQSEGMSTGDEEEAGPPLDKGGFLCFSGELSTEKAARARVGGFCGTRSTRREQPLVLPDGYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQGYVRTPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLVPEVEDGXXXXXXXXXXXXXXPSPPENGVMSW 947
            MAR+ RTYRKYWPTDA+LKG  VLEDLMLCSFS+K+L  GW VTTDQ WGGKSTATVSWKPWERL G D +ASAT     ++DA AG   ALD QPW L+EG+P TAAPRGVLQSEG+  GDEE   PPL+KGGF CFSGELSTE+AARA+VGGFCGTRSTRR++PLVLPDGY+G+EMRIRTDGRQYEVNFEP SGI+NDLYQGYVRTP GQW+TV+LPLNRLLLTGQGQIRD+QRKWD GMEL+S+GFTIADGV GPFRLDVAWV+LV EV+D               P PP +GVMSW
Sbjct:    1 MARVARTYRKYWPTDAVLKGTAVLEDLMLCSFSTKDLLAGWDVTTDQSWGGKSTATVSWKPWERLGGTDGSASAT-----AADAAAGGACALDVQPWRLFEGTPATAAPRGVLQSEGLPAGDEENTAPPLEKGGFFCFSGELSTERAARAKVGGFCGTRSTRRQEPLVLPDGYRGVEMRIRTDGRQYEVNFEPQSGIINDLYQGYVRTPAGQWATVSLPLNRLLLTGQGQIRDIQRKWDVGMELKSIGFTIADGVGGPFRLDVAWVALVSEVDD---EGKDDGDAPRKKPLPPTDGVMSW 292
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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: A0A6H5KSW2_9PHAE (CIA30 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSW2_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 7.930e-49
Identity = 83/115 (72.17%), Postives = 94/115 (81.74%), Query Frame = 3 
Query:  603 QYEVNFEPYSGILNDLYQGYVRTPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLVPEVEDGXXXXXXXXXXXXXXPSPPENGVMSW 947
            +YEVNFEP SGI+NDLYQGYVRTP GQW+TV+LPLNRLLLTGQGQIRD+QRKWD GMEL S+GFTIADGV GPFRLDVAWV+LV EV++G              P PP++GVMSW
Sbjct:   29 RYEVNFEPQSGIINDLYQGYVRTPAGQWATVSLPLNRLLLTGQGQIRDIQRKWDMGMELNSIGFTIADGVGGPFRLDVAWVALVSEVDEGKDDGDAPRKK----PLPPKDGVMSW 139
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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: W7U321_9STRA (NADH:ubiquinone oxidoreductase intermediate-associated protein 30 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U321_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.980e-19
Identity = 55/141 (39.01%), Postives = 80/141 (56.74%), Query Frame = 3 
Query:  459 FSGELSTEKAAR---ARVGGFCGTRSTRREQPLVLP-DGYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQGYVR-TPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLVPEVE 866
            FSG LS  + A     +  G+C  +    E P     +GY+G+E+ +RTDGR Y  N E  S   ++LYQGY+   P GQW T+ LP   + LT  G++  +Q++ D    L S+GF IADG  GPF L++A V+ V  ++
Sbjct:   87 FSGNLSNMRPAADPTVKRTGYCALKV---EMPRSFRVEGYEGLELTVRTDGRSYITNLEVESFFPDELYQGYITGLPGGQWLTIQLPFQDMTLTRLGRMSYIQKELDSTFTLESIGFLIADGKTGPFCLEIANVAAVGRIQ 224
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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: A0A1V9YVR5_9STRA (Queuine tRNA-ribosyltransferase catalytic subunit 1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVR5_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.550e-13
Identity = 62/245 (25.31%), Postives = 98/245 (40.00%), Query Frame = 3 
Query:  141 LCSFSSKELTEGWAVTTDQRWGGKSTATVSWKPWERLTGADPTASATRGGDPSSDAGAGALDAQPWELYEGSPDTAAPRGVLQSEGMSTGDEEEAGPPLDKGGFLCFSGELSTEKAARARV---GGFCGTRSTRREQPLVLPDGYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQGYVRTPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLVPEVE 866
            L  F+S + T+ W V++DQ  GG ST +  + P E +                                                     D+++A     + G   FSG LS       +     G+C  R     Q L L  GYKG+ MRI+TDGR Y +N +  S   +DLY G+++ P  +W    L  +  +LT +G ++           LR++G  +AD   GPF + + W+  +  V+
Sbjct:  452 LFQFASAQATQEWLVSSDQAIGGSSTCSFEFVPHEEMK----------------------------------------------------DDKDA----PQAGAAVFSGNLSLSIQPTEQYVVRSGYCAIRGNV-PQNLHL-HGYKGLAMRIKTDGRTYRINAQADSWNPHDLYMGFLKAPANEWVEAELAFSDFILTSRGYVQMNDPTKLNPASLRTIGIALADDNEGPFSMAIEWIKAIENVD 638
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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: A0A5A8C5V0_CAFRO (CIA30 domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C5V0_CAFRO)

HSP 1 Score: 77.0 bits (188), Expect = 4.070e-12
Identity = 46/141 (32.62%), Postives = 72/141 (51.06%), Query Frame = 3 
Query:  459 FSGELSTEKAARARVGGFCGTRSTRREQPLVLPD----GYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQGYVRTPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLVPEVED 869
            F G +      R   GGFC  R  R  +P+   D      +G+++R++TDGR + +NF+       D++Q  VRT P +W T+ LP +      +G +R+VQ   +   ++   G T+ADG  GPFR +V  V  + E  D
Sbjct:   63 FEGVVDWTSEDRESRGGFCNVR-LRERKPVREDDEEMMATEGVQLRVKTDGRPFLLNFQCRDTTDEDVWQAEVRTAPFRWETLALPWSGFAHVSRGLVREVQMNLEPH-KIDGFGLTVADGRNGPFRCEVQHVVALGEWRD 201
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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: A0A5A8E3B7_CAFRO (CIA30 domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E3B7_CAFRO)

HSP 1 Score: 77.0 bits (188), Expect = 1.160e-11
Identity = 46/141 (32.62%), Postives = 72/141 (51.06%), Query Frame = 3 
Query:  459 FSGELSTEKAARARVGGFCGTRSTRREQPLVLPD----GYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQGYVRTPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLVPEVED 869
            F G +      R   GGFC  R  R  +P+   D      +G+++R++TDGR + +NF+       D++Q  VRT P +W T+ LP +      +G +R+VQ   +   ++   G T+ADG  GPFR +V  V  + E  D
Sbjct:   92 FEGVVDWTSEDRESRGGFCNVR-LRERKPVREDDEEMMATEGVQLRVKTDGRPFLLNFQCRDTTDEDVWQAEVRTAPFRWETLALPWSGFAHVSRGLVREVQMNLEPH-KIDGFGLTVADGRNGPFRCEVQHVVALGEWRD 230
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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: L7MD23_RHIPC (CIA30 domain-containing protein (Fragment) n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7MD23_RHIPC)

HSP 1 Score: 74.3 bits (181), Expect = 7.910e-11
Identity = 48/141 (34.04%), Postives = 74/141 (52.48%), Query Frame = 3 
Query:  459 FSGELSTE--KAARARVGGFCGTRSTRREQPLVLPDGYKG-----MEMRIRTDGRQYEVNF--EPYSGIL-NDLYQGYVRTPPGQ-WSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVS 848
            FSG L T   K  +    G+C  RS R  +P  +P  Y       +E+RIR DGR Y +N   + Y  +  N LYQ  + T  G  W    +P ++ L+  +G+++D Q   D    ++ +G T+ADG+ GPFRL+V ++ 
Sbjct:  171 FSGYLDTTVPKDGKMVETGYCNMRSPRARRPFNMPAAYDWSSFTHLELRIRGDGRSYLINLGADQYFDVTWNVLYQFPLYTRGGPYWQVARIPFSKFLVGNKGRVQDKQGAIDL-TNVKHMGITLADGIAGPFRLEVDYIG 310
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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: L7MEY0_RHIPC (CIA30 domain-containing protein (Fragment) n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7MEY0_RHIPC)

HSP 1 Score: 74.3 bits (181), Expect = 1.010e-10
Identity = 48/141 (34.04%), Postives = 74/141 (52.48%), Query Frame = 3 
Query:  459 FSGELSTE--KAARARVGGFCGTRSTRREQPLVLPDGYKG-----MEMRIRTDGRQYEVNF--EPYSGIL-NDLYQGYVRTPPGQ-WSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVS 848
            FSG L T   K  +    G+C  RS R  +P  +P  Y       +E+RIR DGR Y +N   + Y  +  N LYQ  + T  G  W    +P ++ L+  +G+++D Q   D    ++ +G T+ADG+ GPFRL+V ++ 
Sbjct:  202 FSGYLDTTVPKDGKMVETGYCNMRSPRARRPFNMPAAYDWSSFTHLELRIRGDGRSYLINLGADQYFDVTWNVLYQFPLYTRGGPYWQVARIPFSKFLVGNKGRVQDKQGAIDL-TNVKHMGITLADGIAGPFRLEVDYIG 341
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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: A0A6M2CVE3_RHIMP (Putative complex i intermediate-associated protein 30 mitochondrial ovary overexpressed n=2 Tax=Rhipicephalus TaxID=34630 RepID=A0A6M2CVE3_RHIMP)

HSP 1 Score: 73.2 bits (178), Expect = 1.250e-10
Identity = 47/141 (33.33%), Postives = 73/141 (51.77%), Query Frame = 3 
Query:  459 FSGELSTEKAARARV--GGFCGTRSTRREQPLVLPDGYKG-----MEMRIRTDGRQYEVNF--EPYSGIL-NDLYQGYVRTPPGQ-WSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVS 848
            FSG L T      +V   G+C  RS R  +P  +P  Y       +E+R+R DGR Y +N   + Y  +  N LY   + T  G  W    +P ++ L+  +G+I+D Q   D    ++ +G T+ADG+ GPFRL+V ++ 
Sbjct:  127 FSGYLDTTVPKDGKVVETGYCNVRSPRARRPFNMPAAYDWTPFTHLELRVRGDGRSYMINLGADHYFDVTWNVLYHFPLYTRGGPYWQVTRIPFSKFLVGNKGRIQDKQGAIDLS-NVKHMGITLADGISGPFRLEVDYIG 266
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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: A0A0D2UCD6_CAPO3 (CIA30 domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UCD6_CAPO3)

HSP 1 Score: 71.6 bits (174), Expect = 2.360e-10
Identity = 46/140 (32.86%), Postives = 75/140 (53.57%), Query Frame = 3 
Query:  459 FSGELSTEKAARARV--GGFCGTRSTRREQPLVLP-----DGYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQGYVRTPPG-QWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLV 854
            F G LS  K   +++   GF   RS R  +  + P     + +  +E+ +R DGR Y  N    S   +D+YQ +V T  G +W  + LP  R LLT  G +++ Q  ++K   +R+ GF++ADGV GPF L++  + ++
Sbjct:   75 FDGVLSQAKPQGSKLVRSGFAAIRSKRYPRTPLAPYTMNLEAFDTVELILRGDGRTYISNLSTDSVQEHDVYQSFVYTRGGPEWERILLPFARYLLTYHGYVQEDQPVFNK-RAIRTFGFSLADGVEGPFALEIKSIRVL 213
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZW6_ECTSI2.820e-15674.67Complex I intermediate-associated protein 30, mito... [more]
A0A6H5KSW2_9PHAE7.930e-4972.17CIA30 domain-containing protein n=1 Tax=Ectocarpus... [more]
W7U321_9STRA3.980e-1939.01NADH:ubiquinone oxidoreductase intermediate-associ... [more]
A0A1V9YVR5_9STRA8.550e-1325.31Queuine tRNA-ribosyltransferase catalytic subunit ... [more]
A0A5A8C5V0_CAFRO4.070e-1232.62CIA30 domain-containing protein n=2 Tax=Cafeteria ... [more]
A0A5A8E3B7_CAFRO1.160e-1132.62CIA30 domain-containing protein n=2 Tax=Cafeteria ... [more]
L7MD23_RHIPC7.910e-1134.04CIA30 domain-containing protein (Fragment) n=1 Tax... [more]
L7MEY0_RHIPC1.010e-1034.04CIA30 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6M2CVE3_RHIMP1.250e-1033.33Putative complex i intermediate-associated protein... [more]
A0A0D2UCD6_CAPO32.360e-1032.86CIA30 domain-containing protein n=1 Tax=Capsaspora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:1695634..1699816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score460.3
Seed ortholog evalue6.8e-127
Seed eggNOG ortholog2880.D7FZW6
Preferred nameNDUFAF1
KEGG koko:K18159
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
GOsGO:0001666,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005829,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009266,GO:0009408,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031667,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0036293,GO:0036296,GO:0042594,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050896,GO:0051082,GO:0055086,GO:0055093,GO:0055114,GO:0065003,GO:0070469,GO:0070482,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.mitochondrial respiratory chain complex I assembly
EggNOG OGsKOG2435@1,KOG2435@2759
Ec32 ortholog descriptionComplex I intermediate-associated protein 30, mitochondrial precursor (NADH dehydrogenase [ubiquinon])
Ec32 orthologEc-22_003820.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Exons6
Model size1512
Cds size894
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.518.1prot_C-linearis_contig10.518.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 1695690..1699254 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927337.251963-UTR-C-linearis_contig10:1695633..16956891622927337.251963-UTR-C-linearis_contig10:1695633..1695689Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1695634..1695689 +
1690879634.948924-UTR-C-linearis_contig10:1695633..16956891690879634.948924-UTR-C-linearis_contig10:1695633..1695689Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1695634..1695689 +
1622927337.335298-UTR-C-linearis_contig10:1699254..16998161622927337.335298-UTR-C-linearis_contig10:1699254..1699816Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1699255..1699816 +
1690879635.0214522-UTR-C-linearis_contig10:1699254..16998161690879635.0214522-UTR-C-linearis_contig10:1699254..1699816Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1699255..1699816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927337.2643435-CDS-C-linearis_contig10:1695689..16958441622927337.2643435-CDS-C-linearis_contig10:1695689..1695844Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1695690..1695844 +
1690879634.962269-CDS-C-linearis_contig10:1695689..16958441690879634.962269-CDS-C-linearis_contig10:1695689..1695844Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1695690..1695844 +
1622927337.275758-CDS-C-linearis_contig10:1696498..16966521622927337.275758-CDS-C-linearis_contig10:1696498..1696652Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1696499..1696652 +
1690879634.9734762-CDS-C-linearis_contig10:1696498..16966521690879634.9734762-CDS-C-linearis_contig10:1696498..1696652Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1696499..1696652 +
1622927337.2866578-CDS-C-linearis_contig10:1697016..16971451622927337.2866578-CDS-C-linearis_contig10:1697016..1697145Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1697017..1697145 +
1690879634.9819572-CDS-C-linearis_contig10:1697016..16971451690879634.9819572-CDS-C-linearis_contig10:1697016..1697145Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1697017..1697145 +
1622927337.2973456-CDS-C-linearis_contig10:1697760..16978701622927337.2973456-CDS-C-linearis_contig10:1697760..1697870Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1697761..1697870 +
1690879634.9902875-CDS-C-linearis_contig10:1697760..16978701690879634.9902875-CDS-C-linearis_contig10:1697760..1697870Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1697761..1697870 +
1622927337.3086004-CDS-C-linearis_contig10:1698397..16986531622927337.3086004-CDS-C-linearis_contig10:1698397..1698653Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1698398..1698653 +
1690879634.9984522-CDS-C-linearis_contig10:1698397..16986531690879634.9984522-CDS-C-linearis_contig10:1698397..1698653Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1698398..1698653 +
1622927337.3233964-CDS-C-linearis_contig10:1699164..16992541622927337.3233964-CDS-C-linearis_contig10:1699164..1699254Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1699165..1699254 +
1690879635.007325-CDS-C-linearis_contig10:1699164..16992541690879635.007325-CDS-C-linearis_contig10:1699164..1699254Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1699165..1699254 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.518.1

>prot_C-linearis_contig10.518.1 ID=prot_C-linearis_contig10.518.1|Name=mRNA_C-linearis_contig10.518.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=298bp
MARIVRTYRKYWPTDAILKGKVVLEDLMLCSFSSKELTEGWAVTTDQRWG
GKSTATVSWKPWERLTGADPTASATRGGDPSSDAGAGALDAQPWELYEGS
PDTAAPRGVLQSEGMSTGDEEEAGPPLDKGGFLCFSGELSTEKAARARVG
GFCGTRSTRREQPLVLPDGYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQ
GYVRTPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIAD
GVIGPFRLDVAWVSLVPEVEDGDGTGNGSGDAKRKKPSPPENGVMSW*
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mRNA from alignment at C-linearis_contig10:1695634..1699816+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.518.1 ID=mRNA_C-linearis_contig10.518.1|Name=mRNA_C-linearis_contig10.518.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4183bp|location=Sequence derived from alignment at C-linearis_contig10:1695634..1699816+ (Chordaria linearis ClinC8C monoicous)
CACACTCTCTTGGCTGTATTCCACAGCTCTGACTCACAGCCGGCGTGCAA
GCAAACATGGCGAGGATAGTGCGAACGTACAGGAAGTATTGGCCCACGGA
CGCCATCCTGAAGGGCAAGGTGGTGCTGGAGGACCTGATGCTGTGCTCCT
TCTCGTCCAAGGAGCTGACGGAAGGGTGGGCTGTCACGACAGACCAGCGC
TGGGGCGGGAAGTGAGTGTGTGCATGCGTGTTCGTTGGTGCCGTCGATGT
CCATAACAAAGAAAGCCGCAGCACCTGCGACACACAAGCCGGGAAAGGCC
TCAGTGAAGTATATGGCTGATAGGGGATGGTCGGCTGTTGTAGGCTACCC
CCAAGCGACCAGCTCTGCAGGGGCAAACCCCTTGCAGAAGCAGGTTCGCT
CTCGGCTTACGTACAGCCGACGACCGTCGAGACGGACCAGTACCGGAAGA
GTCGCGAGCAAAGCTTACCTTGGCACACCCACGAAAGCTGTCGTTCCACA
AATCTTTTGCTTGTCACCGGTGCATTTTGTTTGTGAGGGAGAGAGAGCAA
CTTTTGCGCGACGAATGCAGGGATACCGATACGCTCGCTCGCGCCCGCCC
GTGGCGCTGGCTGCTGTCTGCTGCGGTTGGTCAGCGGCGGGACACAGGCG
CACCGCAAAGTAGCTCCCAACCGTCTTCTCCCTCGACCGTAAGGGTGGCC
CATGCCGTGCAACGCCGTGCCCGCACAGGTTACTGTCCGAAGTTCTGACT
TGCTCTCCCTGCCTGTCTGTCGGTCTGCCTGCCTGCCTGCCTGTCTGTCT
GTCGGTCTGTCTGTCTTATCTCTTCTCTGTCTGTCGCTCTGTCTGTCTCT
CTGTGCCGATACTAGATCTACCGCCACAGTTTCGTGGAAACCTTGGGAAC
GGCTTACCGGCGCTGACCCAACAGCTTCTGCCACTCGTGGTGGTGATCCC
AGCAGCGACGCTGGTGCTGGTGCGCTGGACGCGCAGCCGTGGGAGCTGTA
CGAGGGATCGCCTGACACGGTACGAGTTCCGCAGGGTTTTCGCCTCTTGT
ATTCTTGTGTATTCTGGTATGCTTTTATTATCATGCTGGCGCCCGCTGCC
CGAATAGCTGTTGGGGGCGCTGGTATGGCTGGTGCCTACATACGTTCCGT
GCAAGGTTATCTCCCACACGCCGCCTTGCTTTGATTCGCCAGGTGTTGCG
GGCAATGCATTCATTTCTCACGCCGTCTGTATCGAGCATCGCCCCGATTT
CTTAACGTTCTTCATGTATCAGGAGTTTCCCTCTCTCTGAATAAGCCAAG
CAAGGATAAATGTCACGCAATTTGATACTGCATGTCCTCTGAGCATGTGT
GTGTCCCCATTGCCCGTTTCTCTCTTTTTGCAGGCGGCTCCGCGAGGCGT
GCTACAGTCGGAGGGTATGTCAACAGGCGACGAGGAGGAAGCAGGGCCCC
CTCTGGACAAGGGGGGATTCCTGTGTTTTTCTGGGGAGCTTAGCACGGAG
AAGGCGGCCAGGGTGAGGGAGAGATCTGGTGTGATTAAACGGGACCGTTG
TGGGTGTTTTTTACAAATCAAAACAGCATCAAAGAATTAACCTCCCCTCA
ACGAGACGAATCCCTTAGAGGTGGATTAGCTAGCAGTTCAAAACAGTAGT
GACGTAATATGGGATGGACGGAGAATAAAAACACCTAAAACTGGGAACAC
GTCATAAACCTCTCCTGCAGCGCTCTGTGGATGCTTTTGGTTTGCTCGTT
TGTTGTCGCCGTTGGACGGCAGGGGTGTTCGCACATACCTCGGTTCTTGA
TGCTAGCTGTCCTCCCGAAGGAGTGTCAGCGTCGCCTCTCAGCTCGAACA
GGCACAGGTTGAATTACAGCATCTGTTCGGTGACAAGTGTGTCGCCGCGG
CCATGCGTGCTGCCTGTCCTCGAAAGCAACCCCATATCTCAACGATGCTG
AGGTTCGTTGTACAAGTCACTGCTGTGATGTTTGTTGTACATATGTACGC
GGTGTTGCTTGTATCGTTTACCGAGGTTCCTTCCCAAAGAGAACTCTGTT
TCCTCTTCTTGCTTTTTTTTCTGTTTTTCCTGGTATGTCTACCTCGTCGA
TCGCTTTCTTGGCCGTTCGGCCTCTAGGCTAGGGTGGGCGGCTTCTGCGG
AACTAGATCCACTCGACGTGAGCAGCCTCTCGTCCTGCCGGATGGTTACA
AGGGTATGGAGATGCGAATAAGGACCGACGGCCGACAGTGAGTTTCGTTG
TTTGTTGTTTGTTGTTGTTGTTGTTGTCGCCGAACTGTACTCTCACCCAA
ACCAGACTTGGTTCACGAAGATCGAAAAAGCCGTCGCCACGCGTCGTTGT
TTCATGCCCCCCAGCCCGAAAGCGTGACAGAACCAGAACAAGAAAACTGT
ATCGAAACAGCAGCACTAGACTCTGAGCACGAGCCACTAGGCATTCGCCG
CAAATGGCCGGGTTATAAAACATACCGGATCAAGCAAGCGCTACCAAATG
CTGCCCGGGGCAACTCCCACGCGACGAAACCGCTCAACTGTACCTTGTAC
AAGTGCGTCGAAGCTTTTAAAAACCCATCACAAGAGGGCAAGAACCTGCT
GCTGCAAGAGAGATAAATACGCGACTCGCTCTGTCCGCCTGCAGGACGAC
AAAGGCTCTCATATGTATGTGCTTTACCCTGATTTTATTTTGATCCTTGA
AACCGCACTGGTACTAGATCACCCCCCGCCCCCGCGCACCCTCCCCTGGC
TTTGCCGTGCCCAGGTACGAGGTCAACTTCGAGCCATACTCGGGCATCCT
GAACGACCTCTACCAGGGCTACGTCCGAACCCCGCCCGGCCAGTGGTCGA
CCGTTACCCTGCCCCTCAACCGGCTGCTTCTCACGGGGCAGGGGCAGATC
CGCGACGTCCAGAGGAAGTGGGACAAGGGGATGGAGCTGCGATCGGTCGG
TTTCACGATCGCGGACGGGGTCATAGGCCCGTTCCGGCTGGATGTGGCGT
GGGTGTCGCTCGTGCCAGAGGCAAGGGGGAAGAGTAAGGGGTGATGGGTG
GGCTCATTTTGGTTATGAGAGGAGTCAGGGTCAGCTGCTGCCTTGCTTTG
GTGGTTTGACTGATCATACATATGACCATGACCTGGTCGAGAGGCAGGGC
CGAGGAGGTGGAGGCTTGGCCTTTTGAAGTCTGTTTGGTGTCTTTGCCCC
CTTAATACCATCACCGCCTTGTGTTCTGTTATGTGTGTATCGTGTGTTAT
GTGTCGATTCCTCTCCTTTCTCTGTTTCGCCTTTTGCTGCATCTGGTGGT
AGCCGTCAGGTGGTTTGACCTTTGAACGCGCACCCGCCGAGAGAACGCAT
GGCACAGGAGGCCTGCCCCTCCCATCTCTTCGACGATTTACTTGCCGTTT
ACCGTTTGCCGTTTGCCGTTTGCCGTTTGTTCCGTCTCGTGTCTCCGTCG
TAGATACGTCGTTCCCTCTTGATATCTAAAATCTGCTTCATTGTTTTCCG
TTGTTCTGCTGAACGTCATCGTTGGTTTCAGGTGGAAGATGGCGACGGCA
CGGGCAACGGCAGCGGGGACGCGAAAAGAAAAAAGCCTTCTCCTCCGGAG
AACGGTGTCATGTCATGGTAGATTGAGCCCACGATCTCTCTGGGGATAGT
CTAGACCTCTAGGAAATTAGGTTGTCTAAAGTCGCGCCGTTTTGATTGGT
TGGGATCGAAAACTGGGTTTGGTCGTTGTCTCTCCACAAGTATTGGAGGG
ATACCAAACATCCTGCACCGGGTACAACTCTCGCTTTGCAGAAGGCGCTT
TGTTGATTTTGTTCGCCAAAGAACGGATGCCGTGGTAGGCTACAAATTCG
TTTTGCAGTTTTCTGCGTAATCGAAGACCGAACTTCACGTTTCGTTCAAT
ACACAATCCCGAAACTCTTGTGGATACTTCGTAGAAGTATAAGGTCACCA
CCCCGAAACCATCTGGCCGTACGTGTAAGGAGGACAAGAGGAAGGCGTAG
ACGACCCGAACCTCCTTTGGGCGTGCTACCTTGATCGAATTTTGTCAGGT
ACAGACGATAGAGCTATTTCAGGCTGGTGGTACAGGCTCGGTAGAGAGTG
CCGAACGGCATGGCCTCGACAATACAATGCCCATGCAACACAAGGCTGTG
GCGGCCAAAATCAACAAGCCAAGGGAAGTCGTG
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Coding sequence (CDS) from alignment at C-linearis_contig10:1695634..1699816+

>mRNA_C-linearis_contig10.518.1 ID=mRNA_C-linearis_contig10.518.1|Name=mRNA_C-linearis_contig10.518.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1788bp|location=Sequence derived from alignment at C-linearis_contig10:1695634..1699816+ (Chordaria linearis ClinC8C monoicous)
ATGGCGAGGATAGTGCGAACGTACAGGAAGTATTGGCCCACGGACGCCAT
CCTGAAGGGCAAGGTGGTGCTGGAGGACCTGATGCTGTGCTCCTTCTCGT
CCAAGGAGCTGACGGAAGGGTGGGCTGTCACGACAGACCAGCGCTGGGGC
GGGAAATGGCGAGGATAGTGCGAACGTACAGGAAGTATTGGCCCACGGAC
GCCATCCTGAAGGGCAAGGTGGTGCTGGAGGACCTGATGCTGTGCTCCTT
CTCGTCCAAGGAGCTGACGGAAGGGTGGGCTGTCACGACAGACCAGCGCT
GGGGCGGGAAATCTACCGCCACAGTTTCGTGGAAACCTTGGGAACGGCTT
ACCGGCGCTGACCCAACAGCTTCTGCCACTCGTGGTGGTGATCCCAGCAG
CGACGCTGGTGCTGGTGCGCTGGACGCGCAGCCGTGGGAGCTGTACGAGG
GATCGCCTGACACGATCTACCGCCACAGTTTCGTGGAAACCTTGGGAACG
GCTTACCGGCGCTGACCCAACAGCTTCTGCCACTCGTGGTGGTGATCCCA
GCAGCGACGCTGGTGCTGGTGCGCTGGACGCGCAGCCGTGGGAGCTGTAC
GAGGGATCGCCTGACACGGCGGCTCCGCGAGGCGTGCTACAGTCGGAGGG
TATGTCAACAGGCGACGAGGAGGAAGCAGGGCCCCCTCTGGACAAGGGGG
GATTCCTGTGTTTTTCTGGGGAGCTTAGCACGGAGAAGGCGGCCAGGGCG
GCTCCGCGAGGCGTGCTACAGTCGGAGGGTATGTCAACAGGCGACGAGGA
GGAAGCAGGGCCCCCTCTGGACAAGGGGGGATTCCTGTGTTTTTCTGGGG
AGCTTAGCACGGAGAAGGCGGCCAGGGCTAGGGTGGGCGGCTTCTGCGGA
ACTAGATCCACTCGACGTGAGCAGCCTCTCGTCCTGCCGGATGGTTACAA
GGGTATGGAGATGCGAATAAGGACCGACGGCCGACAGCTAGGGTGGGCGG
CTTCTGCGGAACTAGATCCACTCGACGTGAGCAGCCTCTCGTCCTGCCGG
ATGGTTACAAGGGTATGGAGATGCGAATAAGGACCGACGGCCGACAGTAC
GAGGTCAACTTCGAGCCATACTCGGGCATCCTGAACGACCTCTACCAGGG
CTACGTCCGAACCCCGCCCGGCCAGTGGTCGACCGTTACCCTGCCCCTCA
ACCGGCTGCTTCTCACGGGGCAGGGGCAGATCCGCGACGTCCAGAGGAAG
TGGGACAAGGGGATGGAGCTGCGATCGGTCGGTTTCACGATCGCGGACGG
GGTCATAGGCCCGTTCCGGCTGGATGTGGCGTGGGTGTCGCTCGTGCCAG
AGGTACGAGGTCAACTTCGAGCCATACTCGGGCATCCTGAACGACCTCTA
CCAGGGCTACGTCCGAACCCCGCCCGGCCAGTGGTCGACCGTTACCCTGC
CCCTCAACCGGCTGCTTCTCACGGGGCAGGGGCAGATCCGCGACGTCCAG
AGGAAGTGGGACAAGGGGATGGAGCTGCGATCGGTCGGTTTCACGATCGC
GGACGGGGTCATAGGCCCGTTCCGGCTGGATGTGGCGTGGGTGTCGCTCG
TGCCAGAGGTGGAAGATGGCGACGGCACGGGCAACGGCAGCGGGGACGCG
AAAAGAAAAAAGCCTTCTCCTCCGGAGAACGGTGTCATGTCATGGTAGGT
GGAAGATGGCGACGGCACGGGCAACGGCAGCGGGGACGCGAAAAGAAAAA
AGCCTTCTCCTCCGGAGAACGGTGTCATGTCATGGTAG
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