mRNA_C-linearis_contig10.515.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.515.1 vs. uniprot
Match: D7FZW9_ECTSI (Vacuolar protein sorting-associated protein 29 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZW9_ECTSI) HSP 1 Score: 240 bits (612), Expect = 7.580e-74 Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 2 Query: 188 MAGDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTSFPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADIL 538
MAGDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEEST+FPE+KVVQIGQFRVGLTHGHQIVPWGDPNALAM QRQLGADIL
Sbjct: 1 MAGDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTTFPETKVVQIGQFRVGLTHGHQIVPWGDPNALAMTQRQLGADIL 117
BLAST of mRNA_C-linearis_contig10.515.1 vs. uniprot
Match: A0A7S2FLA0_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FLA0_9STRA) HSP 1 Score: 196 bits (497), Expect = 1.720e-56 Identity = 89/114 (78.07%), Postives = 101/114 (88.60%), Query Frame = 2 Query: 197 DFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTSFPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADIL 538
DFGELVLV+GD HIPHR A IPEKFK+MLVPNKMQHVLCTGNLV K+QY++ R LAPN+H+VRGDF+ES+SFPE+KVVQIG F++GL HGHQIVPWGDP ALA QRQL DIL
Sbjct: 22 DFGELVLVVGDCHIPHRAAMIPEKFKRMLVPNKMQHVLCTGNLVTKEQYDEFRNLAPNMHIVRGDFDESSSFPETKVVQIGNFKIGLAHGHQIVPWGDPLALAAVQRQLDVDIL 135
BLAST of mRNA_C-linearis_contig10.515.1 vs. uniprot
Match: A0A7S2BTX2_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BTX2_9STRA) HSP 1 Score: 192 bits (489), Expect = 1.530e-55 Identity = 86/118 (72.88%), Postives = 104/118 (88.14%), Query Frame = 2 Query: 188 MAG-DFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTSFPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADIL 538
MAG DFGEL LV+GD HIPHR A IPEKFK+MLVPNKMQHVLCTGNLV K+Q+++ R+LAPN+H+VRGDF+E ++FPE+KVVQIGQF++GL HGHQ+VPWGDP ALA QR++ DIL
Sbjct: 1 MAGSDFGELALVIGDCHIPHRAAGIPEKFKRMLVPNKMQHVLCTGNLVSKEQFDEFRSLAPNMHIVRGDFDEQSNFPETKVVQIGQFKIGLVHGHQVVPWGDPLALAQVQREMDVDIL 118
BLAST of mRNA_C-linearis_contig10.515.1 vs. uniprot
Match: W4GLS4_9STRA (Vacuolar protein sorting-associated protein 29 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLS4_9STRA) HSP 1 Score: 191 bits (484), Expect = 1.580e-54 Identity = 86/114 (75.44%), Postives = 100/114 (87.72%), Query Frame = 2 Query: 197 DFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTSFPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADIL 538
DFGELVLVLGDMHIPHR IPEKFKKMLVPNKMQHVLCTGN+V K+QY++LR LAPNVH+VRGDF+ES+++P+ KV+ IGQFR+GL HGHQIVPWGD + LA QR+L DIL
Sbjct: 3 DFGELVLVLGDMHIPHRAVDIPEKFKKMLVPNKMQHVLCTGNMVTKEQYDELRGLAPNVHIVRGDFDESSNYPDKKVITIGQFRIGLCHGHQIVPWGDVDCLAALQRKLNVDIL 116
BLAST of mRNA_C-linearis_contig10.515.1 vs. uniprot
Match: A0A485KLT9_9STRA (Vacuolar protein sorting-associated protein 29 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KLT9_9STRA) HSP 1 Score: 189 bits (479), Expect = 4.760e-54 Identity = 84/117 (71.79%), Postives = 101/117 (86.32%), Query Frame = 2 Query: 188 MAGDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTSFPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADIL 538
MA DFGELVL++GDMHIPHR IPEKFKKMLVPNKMQHVLCTGN+V K+Q+++LR LAPNVH+VRGDF+E ++P+ KV+ IGQFR+GL HGHQIVPWGD ++LA QR+L DIL
Sbjct: 1 MAADFGELVLIVGDMHIPHRAVDIPEKFKKMLVPNKMQHVLCTGNMVTKEQFDELRDLAPNVHIVRGDFDELCNYPDKKVITIGQFRIGLCHGHQIVPWGDADSLAALQRKLNVDIL 117
BLAST of mRNA_C-linearis_contig10.515.1 vs. uniprot
Match: A0A6V3BCL2_HETAK (Vacuolar protein sorting-associated protein 29 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3BCL2_HETAK) HSP 1 Score: 188 bits (477), Expect = 1.420e-53 Identity = 86/115 (74.78%), Postives = 104/115 (90.43%), Query Frame = 2 Query: 197 DFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEE-STSFPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADIL 538
DFGELVLVLGDMHIPHRE+AIPEKF++MLVPNKMQHVLCTGNLV ++QY+DLR+LAPNVHVVRGDF++ S ++P++KVV IGQ ++GL HGHQ+VPWGD ++L M QRQL DIL
Sbjct: 8 DFGELVLVLGDMHIPHRESAIPEKFRRMLVPNKMQHVLCTGNLVTQEQYDDLRSLAPNVHVVRGDFDDASANYPDTKVVTIGQIKIGLCHGHQVVPWGDLDSLEMLQRQLDVDIL 122
BLAST of mRNA_C-linearis_contig10.515.1 vs. uniprot
Match: A0A1V9ZFC7_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZFC7_9STRA) HSP 1 Score: 187 bits (475), Expect = 1.920e-53 Identity = 87/119 (73.11%), Postives = 103/119 (86.55%), Query Frame = 2 Query: 188 MAGDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEE--STSFPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADIL 538
MA DFGELVLV+GD+HIPHR IPEKFKKMLVPNKMQHV+CTGNLV K+Q+++LR LAPNVHVVRGDF+E ST+FP+ KV+ IGQFR+G+ HGHQIVPWGD ++LA QR+L DIL
Sbjct: 1 MAADFGELVLVVGDLHIPHRALDIPEKFKKMLVPNKMQHVVCTGNLVTKEQFDELRDLAPNVHVVRGDFDEVESTTFPDKKVITIGQFRIGICHGHQIVPWGDVDSLAALQRKLNVDIL 119
BLAST of mRNA_C-linearis_contig10.515.1 vs. uniprot
Match: A0A024TMU1_9STRA (Vacuolar protein sorting-associated protein 29 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TMU1_9STRA) HSP 1 Score: 187 bits (474), Expect = 2.450e-53 Identity = 85/114 (74.56%), Postives = 97/114 (85.09%), Query Frame = 2 Query: 197 DFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTSFPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADIL 538
DFGELVLVLGDMHIPHR IPEKFKKMLVPNKMQHVLCTGNLV K+Q+++LR LAPNVH+VRGDF+E + +P+ KVV IGQFR+GL HGHQIVPWGD + L QR+L DIL
Sbjct: 3 DFGELVLVLGDMHIPHRAVDIPEKFKKMLVPNKMQHVLCTGNLVTKEQFDELRDLAPNVHIVRGDFDEGSHYPDKKVVTIGQFRIGLCHGHQIVPWGDVDCLGALQRKLNVDIL 116
BLAST of mRNA_C-linearis_contig10.515.1 vs. uniprot
Match: A0A7S2S7P2_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7P2_9STRA) HSP 1 Score: 186 bits (473), Expect = 3.440e-53 Identity = 83/117 (70.94%), Postives = 103/117 (88.03%), Query Frame = 2 Query: 188 MAGDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTSFPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADIL 538
MA DFGELVLV+GD+ IPHR A+IPE+FK+MLVPNKMQHVLCTGNLV K+Q+++ R+LAPN+HVV+GDF+++ FPE KVVQIGQFR+GL HGHQ+VPWGDP AL+ QRQ+ DI+
Sbjct: 1 MASDFGELVLVVGDVLIPHRAASIPEQFKRMLVPNKMQHVLCTGNLVTKEQFDEFRSLAPNMHVVKGDFDDNPLFPEQKVVQIGQFRIGLIHGHQVVPWGDPIALSTVQRQMDVDII 117
BLAST of mRNA_C-linearis_contig10.515.1 vs. uniprot
Match: A0A835ZKD1_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKD1_9STRA) HSP 1 Score: 187 bits (475), Expect = 3.480e-53 Identity = 87/117 (74.36%), Postives = 102/117 (87.18%), Query Frame = 2 Query: 194 GDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTS--FPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADIL 538
GDFGELVLVLGD+HIPHR AAIPEKF++MLVPNKM+HVLCTGNLV KD+Y +LR LAPNVHVV GDF++S + +PESKVV IG +R+GL HGHQ+VPWGDP AL++ QRQL DIL
Sbjct: 2 GDFGELVLVLGDLHIPHRAAAIPEKFRRMLVPNKMKHVLCTGNLVTKDRYEELRALAPNVHVVSGDFDDSAAAAWPESKVVHIGAWRIGLVHGHQVVPWGDPAALSILQRQLDCDIL 118 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.515.1 >prot_C-linearis_contig10.515.1 ID=prot_C-linearis_contig10.515.1|Name=mRNA_C-linearis_contig10.515.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=196bp MAGDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDback to top mRNA from alignment at C-linearis_contig10:1661871..1665480- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.515.1 ID=mRNA_C-linearis_contig10.515.1|Name=mRNA_C-linearis_contig10.515.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3610bp|location=Sequence derived from alignment at C-linearis_contig10:1661871..1665480- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1661871..1665480- >mRNA_C-linearis_contig10.515.1 ID=mRNA_C-linearis_contig10.515.1|Name=mRNA_C-linearis_contig10.515.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at C-linearis_contig10:1661871..1665480- (Chordaria linearis ClinC8C monoicous)back to top |