mRNA_C-linearis_contig10.484.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: A0A6H5L4R0_9PHAE (RNase H type-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4R0_9PHAE) HSP 1 Score: 501 bits (1291), Expect = 6.330e-167 Identity = 322/485 (66.39%), Postives = 353/485 (72.78%), Query Frame = 1 Query: 100 MVKKLPACYGIRKGRGAPVVVHSWSEVVAKTNGFPGADFRKFKTPEEASNYANQAEAEGGALNPAPEGWASMWFDGGCRGNPGPSGAGAVIFNDKEKELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVRLNELKCTWHHVQRKHNVRADLLANIAMDSKSMDEIYDPSTGVANAPPNAXXXXXXXXXXXXXXXXXXXXXXPPTLPGIVPTLPGIGGAA------------PASSPPGTTLTXXXXXXXXXXXXXXXXXXXSSSSPVPRSIDEAREVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLRLPGGAAAREAWAEPATAR-------RFMVHLASWRKAEDEAGAAAAVLYEGAWWKRLNASCFLVSRCPRPPPSPPGTAEADKRRAGTGADKRGLSPASNALRILGQVLNEIDLAGGGKVGVVTNEPALAELLS 1497
MVKKLPACYGIRKGRGAPVVVHSW+EVVAKTNGFPGADFRKFKTPEEA++YAN + EGG LNPAP GW+++WFDGGCRGNPGPSGAGAVIFND EKELYSGYKYLGEGKTNNEAEYESVILGL+AAAKL Q+VVKGDSMLVIQQMMGKWRVSAPKLVGLH+QASEVV+ ++LKCTWHHV RK NVRADLLANIAMDSKSMDEIYDPSTGV N PNA XXXXXXXXXXXXXXXXXXXXX IVPTLPGIGG+A P + PP +L X +S S VPRSI+EARE XXXXXXXXXXXXX GL++P G AAR WA AT RF+VHLASWRK E + GA AA++ E +KRL A PP P AEA+KRRA +RGLS A LR+L QVL+EI+ GGG V VVTNEPAL +LLS
Sbjct: 1 MVKKLPACYGIRKGRGAPVVVHSWAEVVAKTNGFPGADFRKFKTPEEATDYANLVD-EGGGLNPAPAGWSTLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMDSKSMDEIYDPSTGVVNTAPNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXIVPTLPGIGGSAGTTVASTSAAPAPVTLPP-PSLKXPSILPGATDAYPPPPASAASVSAVPRSIEEAREXXXXXXXXXXXXXXXXDARASIAAGGGVTSTSGLKVPDGQAARAMWASLATGSLTESSPPRFLVHLASWRKTETDLGAVAAIVQEERMFKRLTA-----------PPGVPA-AEAEKRRAAAADQRRGLSAAGTGLRVLAQVLDEIEQIGGGNVAVVTNEPALVDLLS 471
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: D7FZY9_ECTSI (Ribonuclease H n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY9_ECTSI) HSP 1 Score: 440 bits (1131), Expect = 5.790e-147 Identity = 298/479 (62.21%), Postives = 333/479 (69.52%), Query Frame = 1 Query: 172 SEVVAKTNGFPGADFRKFKTPEEASNYANQAEAEGGALNPAPEGWASMWFDGGCRGNPGPSGAGAVIFNDKEKELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVRLNELKCTWHHVQRKHNVRADLLANIAMDSKSMDEIYDPSTGVANAPPNAXXXXXXXXXXXXXXXXXXXXXXPPTLPGIVPT----------LPGIGGAA------------PASSPPGTTLTXXXXXXXXXXXXXXXXXXXSSSSPVPRSIDEAREVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLRLPGGAAAREAWAEPATAR-------RFMVHLASWRKAEDEAGAAAAVLYEGAWWKRLNASCFLVSRCP---RPPPSPPGT--AEADKRRAGTGA--DKRGLSPASNALRILGQVLNEIDLAGGGKVGVVTNEPALAELLSV 1500
S +V TNGFPGADFRKFKTPEEA++YAN + EGG LNPAP GW+++WFDGGCRGNPGPSGAGAVIFND EKELYSGYKYLGEGKTNNEAEYESVILGL+AAAKL Q+VVKGDSMLVIQQMMGKWRVSAPKLVGLH+QASEVV+ ++LKCTWHHV RK NVRADLLANIAMDSKSMDEIYDPSTGV N PNA XXXXXXXXXXXXXXXXXXXXP LPGIGG+A P + PP +L +S+S VPRSI+EAREVAAXXXXXXXXXXXXX GL++P G AAR WA AT RF+VHLASWRK E + GA AA++ E +KRL V+RC +P +PPG AEA+KRRA A +RGLS A LR+L QVL+EI+ GGG V VVTNEPAL +LLSV
Sbjct: 2 SYLVRLTNGFPGADFRKFKTPEEATDYANLVD-EGGGLNPAPAGWSTLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMDSKSMDEIYDPSTGVVNTAPNAAAXXXXXXXXXXXXXXXXXXXXPAAXXXXXXXXXXXXXXXXXLPGIGGSAGTTVASTSAAPAPVTLPP-ASLKPPSILPGATDAYPPPPVSAASASAVPRSIEEAREVAAXXXXXXXXXXXXXDARASIAAGGGVTSTSGLKVPDGQAARAMWASLATGSLAESSPPRFLVHLASWRKTETDLGAVAAIVQEEGMFKRLT-PVLRVTRCATPAQPAQAPPGVPAAEAEKRRAVAAAADHRRGLSAAGTGLRVLAQVLDEIEQIGGGNVAVVTNEPALVDLLSV 477
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: A0A6U1LVX6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LVX6_9STRA) HSP 1 Score: 141 bits (356), Expect = 2.500e-35 Identity = 97/235 (41.28%), Postives = 124/235 (52.77%), Query Frame = 1 Query: 124 YGIRKGRGAPVVVHSWSEVVAKTNGFPGADFRKFKTPEEASNYA-----------------------NQAEA----EGGALNP--------APEGWAS----MWFDGGCRGNPGPSGAGAVIFNDK--EKELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVRLNELKCTWHHVQRKHNVRADLLANIAMDSKS 705
Y I GR P +V +W E + GF GA F+ F EA + N A+A GGA +P APE A M+FDG RGNPG GAGAVI+ E +L+ GY+YLGE TNNEAEY + +LGL+AAA G + + V GDSMLVI Q GKW+V+A L+ LH+ A +++R + HV R+ N AD LAN A+DSKS
Sbjct: 7 YAIANGRNGPKIVRTWKECSQEVQGFSGAVFKGFSEQAEAETFLLMYGVSADLQESPGEENKSSQRPNLAKAWVEQHGGARDPLEDEMEEKAPEKPAQDRPVMFFDGASRGNPGEGGAGAVIYTSDSFENQLWRGYRYLGEC-TNNEAEYTAFLLGLQAAADAGIQNLKVCGDSMLVINQATGKWKVNAENLMPLHENAKKLIRTMP-GLSLRHVPREENTVADGLANQALDSKS 239
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: A0A6T8JIG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8JIG0_9STRA) HSP 1 Score: 115 bits (289), Expect = 2.040e-26 Identity = 68/153 (44.44%), Postives = 96/153 (62.75%), Query Frame = 1 Query: 277 GALNPAP-EGWA-------SMWFDGGCRGNPGPSGAGAVIFNDKEKELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVRLNELKCTWH--HVQRKHNVRADLLANIAMDSKS 705
G NP P EG+ ++ FDGG RGNPG SGAG VI+NDK +E+++G L + TNNEAEY +++ GL+ A +LG + + V+GDS L++ Q+ G+++V + L H+ A E L T+ H+ R+ N RAD LANIAMDS S
Sbjct: 19 GGPNPEPKEGFTIDPNQTYNLQFDGGSRGNPGLSGAGMVIYNDKSQEVWNGSYLLPKEATNNEAEYTALVKGLQHARRLGIRHLAVQGDSNLIVMQITGRYKVKSQHLKPFHRDAVE---LRSAFSTFEISHIPREENGRADELANIAMDSAS 168
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: A0A7S2KCF7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KCF7_9STRA) HSP 1 Score: 112 bits (281), Expect = 9.740e-26 Identity = 58/144 (40.28%), Postives = 88/144 (61.11%), Query Frame = 1 Query: 283 LNPAPEGWASMWFDGGCRGNPGPSGAGAVIFNDKEKELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVR-LNELKCTWHHVQRKHNVRADLLANIAMDSKSMD 711
LN +P + FDGG RGNPG +GAG V++++ E++ G YLGE TNNEAEY ++ GL+ A +G +VV+GDS L+++Q+ GK++ + KL+ +++ N + H+ R+ N RAD LAN AMD + D
Sbjct: 3 LNVSPYRTYVLQFDGGSRGNPGTAGAGMVLYDEVGHEVWHGRHYLGEHSTNNEAEYTGLLAGLKCARAIGVSNIVVQGDSELIVKQLQGKYKCKSSKLIPYFTSVKSLIKGFNSFEV--RHIPREQNFRADELANEAMDWREND 144
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: A0A6C0CSI6_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CSI6_9ZZZZ) HSP 1 Score: 112 bits (280), Expect = 1.380e-25 Identity = 65/131 (49.62%), Postives = 90/131 (68.70%), Query Frame = 1 Query: 310 SMWFDGGCRGNPGPSGAGAVIFNDKEKELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVRL-NELKC-TWHHVQRKHNVRADLLANIAMD 696
++ FDGG RGNPG +GAG VI+ D +E+YSG LG TNN AEY+ + LGL A K G + +++KGDS+LV+ Q+ KW+V K + L +Q + V +L N+L+ T HV+RK+N RAD LAN+AMD
Sbjct: 27 TLMFDGGSRGNPGTAGAGFVIYKDM-REIYSGCAPLGHA-TNNYAEYKGLELGLTCAIKKGIESLIIKGDSLLVLNQITNKWKV---KSISLKEQYTNVKKLLNQLRSYTVEHVKRKYNKRADELANMAMD 152
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: A0A6C0HQK6_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HQK6_9ZZZZ) HSP 1 Score: 111 bits (277), Expect = 3.240e-25 Identity = 59/124 (47.58%), Postives = 88/124 (70.97%), Query Frame = 1 Query: 313 MWFDGGCRGNPGPSGAGAVIFNDKEKELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVRLNELKCTWHHVQRKHNVRADLLAN 684
++FDG C+GNPGP GAGAVI+N+ EL++ ++G+ TNN AEY +I+GL+ +AKLG K + V GDS LVI+QM G ++V++ LV L+K A ++ + + +++HV RK N RAD L+N
Sbjct: 26 LFFDGCCKGNPGPGGAGAVIYNNGI-ELWADCVFVGKKITNNIAEYTGLIIGLKQSAKLGIKNIAVNGDSQLVIKQMNGIYKVTSENLVELYKTAKQLEKSFD-SISYNHVYRKDNKRADELSN 147
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: A0A061RJK7_9CHLO (Ribonuclease h n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RJK7_9CHLO) HSP 1 Score: 112 bits (280), Expect = 1.050e-24 Identity = 83/235 (35.32%), Postives = 114/235 (48.51%), Query Frame = 1 Query: 124 YGIRKGRGAPVVVHSWSEVVAKTNGFPGADFRKFKTPEEASNYANQAEAE-------------------------------------GGALNPAPEGWASMWFDGGCRGNPGPSGAGAVIFNDKEKELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVRLNELKCTWHHVQRKHNVRADLLANIAMDSKSMDEI 717
Y + +GR A V SW+E + GF GA F+ F A N+ Q A G AL+ + + FDGG R NPGP+GAGAVI+ + L+ G+ +LG TNN AEY ++ GLR AA LG K++ V+GDS LV++QM G++RV L LH+ VV + T+ HV R N AD LAN A+D++ E+
Sbjct: 7 YAVARGR-ASGVFSSWAECEKQVKGFKGALFKGFPNKHLAENFIMQNVASPCTPSRIGVSRTEHESPDRESQRPPKRHRKSEAPCEPGAALSSSVH---LLRFDGGSRRNPGPAGAGAVIWAPSGECLWRGWLWLGVA-TNNVAEYTGLLFGLRKAAALGLKRLAVEGDSDLVMKQMNGEYRVKNTALRSLHRDCKVVVGQMD-HVTFRHVYRSTNHEADSLANRAIDTRESSEV 235
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: A0A7S2I3Y3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I3Y3_9STRA) HSP 1 Score: 110 bits (274), Expect = 4.060e-24 Identity = 60/131 (45.80%), Postives = 88/131 (67.18%), Query Frame = 1 Query: 319 FDGGCRGNPGPSGAGAVIFNDKE-KELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVRLNELKCTW--HHVQRKHNVRADLLANIAMDSK 702
FDGG RGNPG +G+G V+++ +E E++SG KYLGE TNN AEY ++ G++ A LGA+ +V +GDS+LV+ Q+ G+W+V K GL EV++L ++ +H+ R+ N RAD LAN AMD +
Sbjct: 76 FDGGSRGNPGVAGSGMVLYDAEEGAEVWSGQKYLGEDSTNNVAEYTGLLTGMKCAYALGARHIVAQGDSLLVVNQLNGEWKV---KNQGLKPIFQEVMKLRGQFESFQINHIPREENSRADRLANKAMDDR 203
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: A0A535LZB1_9CHLR (Ribonuclease HI family protein n=3 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535LZB1_9CHLR) HSP 1 Score: 108 bits (271), Expect = 4.170e-24 Identity = 58/127 (45.67%), Postives = 86/127 (67.72%), Query Frame = 1 Query: 322 DGGCRGNPGPSGAGAVIFNDKEKELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVRLNELKCTWHHVQRKHNVRADLLANIAMDSK 702
DGG RGNPGP+ G VI +D+ ++L + +K+LG TNN+AEY+++I GL+A + V DS LV++Q+ GKW+V P+L GLH+QA+++++ K T HV R+ N RAD L N+A+D K
Sbjct: 44 DGGARGNPGPAALGVVIEDDQGEKLRTFHKWLGVA-TNNQAEYQALIEGLKAMKDWEFDHLDVYMDSKLVVEQVNGKWKVKEPELQGLHRQATDLLKQFGDKVTVQHVAREENRRADKLVNMAIDEK 169 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.484.1 >prot_C-linearis_contig10.484.1 ID=prot_C-linearis_contig10.484.1|Name=mRNA_C-linearis_contig10.484.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=467bp MVKKLPACYGIRKGRGAPVVVHSWSEVVAKTNGFPGADFRKFKTPEEASNback to top mRNA from alignment at C-linearis_contig10:1194607..1200188+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.484.1 ID=mRNA_C-linearis_contig10.484.1|Name=mRNA_C-linearis_contig10.484.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5582bp|location=Sequence derived from alignment at C-linearis_contig10:1194607..1200188+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1194607..1200188+ >mRNA_C-linearis_contig10.484.1 ID=mRNA_C-linearis_contig10.484.1|Name=mRNA_C-linearis_contig10.484.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2802bp|location=Sequence derived from alignment at C-linearis_contig10:1194607..1200188+ (Chordaria linearis ClinC8C monoicous)back to top |