mRNA_C-linearis_contig10.462.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.462.1 vs. uniprot
Match: A0A6H5LRB6_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LRB6_9PHAE) HSP 1 Score: 382 bits (981), Expect = 2.510e-122 Identity = 206/269 (76.58%), Postives = 221/269 (82.16%), Query Frame = 1 Query: 76 MAKVIRKELEQKLAALGGEEWDSMSESDLSGDYNNETSDGEELKPPPLXXXXXXXXXXXXXXXXXXGKGP-SVVPVGPAGQPSGVVRIGHIPHGFYEEAMNGFFKQFGDVIRVRISRSKKSGRCKGYAYVEFVSPEVAEIVAETMNGYYLFDKQLVCRVLRFDEIHPNLFDGAGVKFRKVNWHGLYRQKYNADRTPAKDEKHTGKLLKKDKAKKDKLAKLGIDYVFPGFLATLNDRQAAEEPFQGQQQPKRARRNSKG----DGKEGQE 867
MAKVIR++LEQKLAAL G EWDSMSESDLSG E SDG+ELKPPPL GKG SVVPVGPAG+PSGVV IGHIPHGFYEEAMNGFFKQFGDVIRVRISRSKKSGRCKGYAYVEF SPEVA+IVAETMNGYYLFDKQLVCRVL+F+EIHPNLFDGAGVKFRKVNWHGLYR+KYNADRT KDEKHT KLLKKDKAKKDKLAKLGIDY FPGF+ATL DR A+ PFQ +PK A++N + DGK G+E
Sbjct: 1 MAKVIRRDLEQKLAALEGAEWDSMSESDLSG---GEASDGDELKPPPLPRHAKKAGRK--------GKGGGSVVPVGPAGEPSGVVYIGHIPHGFYEEAMNGFFKQFGDVIRVRISRSKKSGRCKGYAYVEFASPEVAQIVAETMNGYYLFDKQLVCRVLKFEEIHPNLFDGAGVKFRKVNWHGLYREKYNADRTQVKDEKHTAKLLKKDKAKKDKLAKLGIDYDFPGFVATLKDRNVAKGPFQ---KPKGAKQNKESAKVEDGKGGKE 255
BLAST of mRNA_C-linearis_contig10.462.1 vs. uniprot
Match: A0A369RRV5_9METZ (MKI67 FHA domain-interacting nucleolar phosphoprotein-like n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369RRV5_9METZ) HSP 1 Score: 172 bits (435), Expect = 1.280e-45 Identity = 76/148 (51.35%), Postives = 108/148 (72.97%), Query Frame = 1 Query: 322 GVVRIGHIPHGFYEEAMNGFFKQFGDVIRVRISRSKKSGRCKGYAYVEFVSPEVAEIVAETMNGYYLFDKQLVCRVLRFDEIHPNLFDGAGVKFRKVNWHGLYRQKYNADRTPAKDEKHTGKLLKKDKAKKDKLAKLGIDYVFPGFLA 765
GV+ +GHIPHGFYEE M GFF QFGD+ ++R+SRSK+SGR +GYA++EF + +VA IVAETMN Y + + L C++++ + +HP F GA KFRK+NW L +++ NA +T ++ K KL+K + ++ KL KLGIDY FPG+ A
Sbjct: 48 GVIYVGHIPHGFYEEEMKGFFSQFGDINKIRLSRSKRSGRSRGYAFIEFSNQDVATIVAETMNNYMMCGRLLKCQLMKSESVHPETFKGANRKFRKINWRELAKKQANAPKTDQENTKVVNKLIKAENVRRKKLQKLGIDYQFPGYAA 195
BLAST of mRNA_C-linearis_contig10.462.1 vs. uniprot
Match: B3S8Q0_TRIAD (RRM domain-containing protein (Fragment) n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3S8Q0_TRIAD) HSP 1 Score: 169 bits (428), Expect = 1.690e-45 Identity = 74/146 (50.68%), Postives = 107/146 (73.29%), Query Frame = 1 Query: 325 VVRIGHIPHGFYEEAMNGFFKQFGDVIRVRISRSKKSGRCKGYAYVEFVSPEVAEIVAETMNGYYLFDKQLVCRVLRFDEIHPNLFDGAGVKFRKVNWHGLYRQKYNADRTPAKDEKHTGKLLKKDKAKKDKLAKLGIDYVFPGFL 762
V+ +GHIPHGFYEE M GFF QFGD+ ++R+SRSK+SGR +GYA++EF + +VA IVAETMN Y + + L C++++ + +HP F GA KFRK+NW L +++ NA +T ++ K KL+K + ++ KL KLGIDY FPG++
Sbjct: 1 VIYVGHIPHGFYEEEMKGFFSQFGDINKIRLSRSKRSGRSRGYAFIEFSNQDVATIVAETMNNYMMCGRLLKCQLMKSESVHPETFKGANRKFRKINWRELAKKQANAPKTDQENTKVVNKLIKAENVRRKKLQKLGIDYQFPGYV 146
BLAST of mRNA_C-linearis_contig10.462.1 vs. uniprot
Match: A0A197JPK7_9FUNG (FHA domaininteracting nucleolar phospho protein putat n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JPK7_9FUNG) HSP 1 Score: 170 bits (430), Expect = 1.090e-44 Identity = 81/166 (48.80%), Postives = 120/166 (72.29%), Query Frame = 1 Query: 298 VGPAGQP-----SGVVRIGHIPHGFYEEAMNGFFKQFGDVIRVRISRSKKSGRCKGYAYVEFVSPEVAEIVAETMNGYYLFDKQLVCRVLRFDEIHPNLFDGAGVKFRKVNWHGLYRQKYNADRTPAKDEKHTGKLLKKDKAKKDKLAKLGIDYVFPGFLATLNDR 780
+G GQP +GVV +G IPHGFYE+ MN +F QFG V+R+R+SR+KK+G+ K YA++EF S EVA+IVA+TM+ Y LF QL C+ L+ +IHP +F GA KF+ + W + ++K+NA+++ A+ ++ KLLK + AK+ KLA+LGIDY FPG+ A + ++
Sbjct: 56 LGSLGQPKDKSATGVVYLGRIPHGFYEDQMNAYFSQFGKVLRLRLSRNKKTGKSKHYAFIEFASQEVADIVADTMDNYLLFGHQLKCKALQPTQIHPAMFLGANKKFKAIPWQKISKEKHNAEKSAAQMKQVAKKLLKNESAKRAKLAELGIDYEFPGYKANIQEK 221
BLAST of mRNA_C-linearis_contig10.462.1 vs. uniprot
Match: A0A1Y2H203_9FUNG (RRM domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2H203_9FUNG) HSP 1 Score: 170 bits (431), Expect = 2.070e-43 Identity = 79/154 (51.30%), Postives = 113/154 (73.38%), Query Frame = 1 Query: 319 SGVVRIGHIPHGFYEEAMNGFFKQFGDVIRVRISRSKKSGRCKGYAYVEFVSPEVAEIVAETMNGYYLFDKQLVCRVLRFDEIHPNLFDGAGVKFRKVNWHGLYRQKYNADRTPAKDEKHTGKLLKKDKAKKDKLAKLGIDYVFPGFLATLNDR 780
+GVV +G IPHGFYEE M +F QFG V+R+R+SR+KK+G+ K YA++EF S EVAEIVA+TMN Y LF QL C+ L+ +IHP +F GA KF+ + W + ++K+NA++T + + KLLK + AK+ KLA+LGIDY FPG+ A++ ++
Sbjct: 187 TGVVYLGRIPHGFYEEQMKAYFSQFGKVLRLRLSRNKKTGKSKHYAFIEFASQEVAEIVADTMNNYLLFGHQLKCKALQPSQIHPAMFSGANKKFKAIPWLKIAKEKHNAEKTTVQSNQIKKKLLKNEAAKRAKLAELGIDYDFPGYKASVPEK 340
BLAST of mRNA_C-linearis_contig10.462.1 vs. uniprot
Match: A0A4P9YU86_9FUNG (RRM domain-containing protein (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YU86_9FUNG) HSP 1 Score: 163 bits (412), Expect = 3.660e-43 Identity = 75/148 (50.68%), Postives = 107/148 (72.30%), Query Frame = 1 Query: 322 GVVRIGHIPHGFYEEAMNGFFKQFGDVIRVRISRSKKSGRCKGYAYVEFVSPEVAEIVAETMNGYYLFDKQLVCRVLRFDEIHPNLFDGAGVKFRKVNWHGLYRQKYNADRTPAKDEKHTGKLLKKDKAKKDKLAKLGIDYVFPGFLA 765
GVV +G IPHGFYE+ M G+F QFG V R+R+SR+KK+GR K YA+VEF +VA++VA+TMN Y LF L C+V+ ++H LFDGA KF+ + H + R+++N RTP + E+HT +LL+K++ K+ +L GIDY FPGF++
Sbjct: 1 GVVYVGRIPHGFYEDEMRGYFGQFGTVSRLRLSRNKKTGRSKHYAFVEFADADVADVVADTMNNYLLFGHLLKCQVVPAHKVHARLFDGANRKFKPLPLHKMAREEHNRTRTPEEVERHTKRLLRKEQQKRKRLQDAGIDYAFPGFVS 148
BLAST of mRNA_C-linearis_contig10.462.1 vs. uniprot
Match: A0A7S3XMA8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMA8_HETAK) HSP 1 Score: 165 bits (418), Expect = 6.540e-43 Identity = 104/230 (45.22%), Postives = 144/230 (62.61%), Query Frame = 1 Query: 76 MAKVIRKELEQKLAALGGEEWDSMSESDLSGDYNNETSDGEELKPPPLXXXXXXXXXXXXXXXXXXGKGPSVVPVGPAGQPSGVVRIGHIPHGFYEEAMNGFFKQFGDVIRVRISRSKKSGRCKGYAYVEFVSPEVAEIVAETMNGYYLFDKQLVCRVLRFDEIHPNLFDGAGVKFRKVNWHGLYRQKYNADRTPAKDEKHTGKLLKKDKAKKDKLAKLGIDYVFPGFLA 765
M+KV+RKELE KLA+L EW SES+ GD + T + PPP XXXXXXXXXXX + S VV +GHIPHGFYE+ M FF QFGDV +R+SRS++ GR +GYA++EF S EVA+IVAETM+GY+L DKQL C ++ +++H +F + K + +W R+ +N +T + + +LL+K+ K+ +LA LGI+Y FPG+ A
Sbjct: 9 MSKVLRKELEAKLASLEDPEW--ASESENEGDEGS-TEASKVSNPPPAEKXXXXXXXXXXX------------------KESAVVYLGHIPHGFYEKEMGSFFDQFGDVKHLRLSRSRRGGRSRGYAFIEFYSAEVAQIVAETMHGYFLEDKQLQCHIVPKEKVHERMFQASCRKLKVEDWQKFAREDHNKPKTQKQMDASVSRLLQKEGKKRRRLAALGIEYDFPGYAA 217
BLAST of mRNA_C-linearis_contig10.462.1 vs. uniprot
Match: A0A0D2JTS4_9CHLO (Putative RNA-binding protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2JTS4_9CHLO) HSP 1 Score: 158 bits (400), Expect = 7.300e-41 Identity = 75/154 (48.70%), Postives = 106/154 (68.83%), Query Frame = 1 Query: 310 GQPSGVVRIGHIPHGFYEEAMNGFFKQFGDVIRVRISRSKKSGRCKGYAYVEFVSPEVAEIVAETMNGYYLFDKQLVCRVLRFDEIHPNLFDGAGVKFRKVNWHGLYRQKYNADRTPAKDEKHTGKLLKKDKAKKDKLAKLGIDYVFPGFLATL 771
G S VV IGH+PHGFYE+ + GFF QFG + RVR+SRSKK+GR K YA++EF PEVA I AE M+G+++F ++L R L+ E+HP LF GA KF++V W + +++N RTP + K LL++D+ ++ K+A+ GIDY + G A L
Sbjct: 38 GDLSSVVYIGHLPHGFYEDQLLGFFSQFGRLSRVRVSRSKKTGRAKHYAFLEFAVPEVARIAAEAMDGHFMFAQRLSVRCLKQGEVHPLLFKGANRKFKQVPWRKIEAERHNRPRTPQEHAKRVAVLLRRDRKRQAKIAEAGIDYEYDGLAAAL 191
BLAST of mRNA_C-linearis_contig10.462.1 vs. uniprot
Match: A0A2V0P5R3_9CHLO (RRM domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P5R3_9CHLO) HSP 1 Score: 158 bits (400), Expect = 7.300e-41 Identity = 73/151 (48.34%), Postives = 103/151 (68.21%), Query Frame = 1 Query: 319 SGVVRIGHIPHGFYEEAMNGFFKQFGDVIRVRISRSKKSGRCKGYAYVEFVSPEVAEIVAETMNGYYLFDKQLVCRVLRFDEIHPNLFDGAGVKFRKVNWHGLYRQKYNADRTPAKDEKHTGKLLKKDKAKKDKLAKLGIDYVFPGFLATL 771
S VV IGH+PHGFYE + GFF QFG + RVR+SRSKK+GR K YA++EF PEVA I AE M G+++F ++L R L+ E+HP LF GA KF++V W + +++N DRTP + KLL++D+ +++++ GIDY + G A L
Sbjct: 41 SNVVYIGHLPHGFYERELLGFFSQFGRLTRVRVSRSKKTGRAKHYAFLEFAVPEVARIAAEAMEGHFMFAQRLSVRCLKRREVHPELFKGANRKFKQVPWRKIEAERHNRDRTPQEHAARVAKLLRRDRKRRERIRAAGIDYEYDGLEAAL 191
BLAST of mRNA_C-linearis_contig10.462.1 vs. uniprot
Match: A0A086TK93_9FUNG (RRM domain-containing protein n=1 Tax=Podila verticillata NRRL 6337 TaxID=1069443 RepID=A0A086TK93_9FUNG) HSP 1 Score: 164 bits (415), Expect = 8.580e-41 Identity = 76/151 (50.33%), Postives = 112/151 (74.17%), Query Frame = 1 Query: 319 SGVVRIGHIPHGFYEEAMNGFFKQFGDVIRVRISRSKKSGRCKGYAYVEFVSPEVAEIVAETMNGYYLFDKQLVCRVLRFDEIHPNLFDGAGVKFRKVNWHGLYRQKYNADRTPAKDEKHTGKLLKKDKAKKDKLAKLGIDYVFPGFLATL 771
+GVV +G IPHGFYEE M +F QFG V+R+R+SR+KK+G+ K YA++EF S EVA+IVA+TM+ Y LF QL C+ L+ +IHP +F GA KF+ + W + + K+NAD++ ++ ++ + KLLK + AK+ KLA LGI+Y FPG+ A++
Sbjct: 229 TGVVYLGRIPHGFYEEQMQAYFTQFGKVLRLRLSRNKKTGKSKHYAFIEFASQEVADIVADTMDNYLLFGHQLKCKALQPSQIHPAMFVGANKKFKAIPWQKISKDKHNADKSASQIKQVSKKLLKNESAKRAKLADLGIEYDFPGYKASV 379 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.462.1 >prot_C-linearis_contig10.462.1 ID=prot_C-linearis_contig10.462.1|Name=mRNA_C-linearis_contig10.462.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=461bp MAKVIRKELEQKLAALGGEEWDSMSESDLSGDYNNETSDGEELKPPPLPLback to top mRNA from alignment at C-linearis_contig10:916541..921841+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.462.1 ID=mRNA_C-linearis_contig10.462.1|Name=mRNA_C-linearis_contig10.462.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5301bp|location=Sequence derived from alignment at C-linearis_contig10:916541..921841+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:916541..921841+ >mRNA_C-linearis_contig10.462.1 ID=mRNA_C-linearis_contig10.462.1|Name=mRNA_C-linearis_contig10.462.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2766bp|location=Sequence derived from alignment at C-linearis_contig10:916541..921841+ (Chordaria linearis ClinC8C monoicous)back to top |