Homology
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match:
A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)
HSP 1 Score: 155 bits (392), Expect = 1.290e-43
Identity = 70/112 (62.50%), Postives = 89/112 (79.46%), Query Frame = 1
Query: 220 SPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHHLG---PSPIRIQAGV 546
SPIGQKP+DVEA+PM+Y+DV +Y+ +WE A+KKE+DGHDKTGTF+ + +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQI G+D+HHL PS I+ +
Sbjct: 109 SPIGQKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSSACPSAASIKTVI 220
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match:
A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)
HSP 1 Score: 162 bits (411), Expect = 2.300e-42
Identity = 73/99 (73.74%), Postives = 87/99 (87.88%), Query Frame = 1
Query: 214 VPSPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 510
+PSPIGQKPNDVEALP++YEDVK +YR W+EAIKKEMDGH+KTGTFS I+ +PEGRK VS+KWVF +K +E G+I DFKAR+VARGFSQ+HG DYHH
Sbjct: 721 IPSPIGQKPNDVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHH 819
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match:
A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)
HSP 1 Score: 162 bits (411), Expect = 2.400e-42
Identity = 73/99 (73.74%), Postives = 87/99 (87.88%), Query Frame = 1
Query: 214 VPSPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 510
+PSPIGQKPNDVEALP++YEDVK +YR W+EAIKKEMDGH+KTGTFS I+ +PEGRK VS+KWVF +K +E G+I DFKAR+VARGFSQ+HG DYHH
Sbjct: 1274 IPSPIGQKPNDVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHH 1372
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match:
A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)
HSP 1 Score: 153 bits (386), Expect = 5.850e-42
Identity = 69/112 (61.61%), Postives = 88/112 (78.57%), Query Frame = 1
Query: 220 SPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHHLG---PSPIRIQAGV 546
SPIGQKP+DVEA+PM+Y+DV +Y+ +WE A+KKE+DGHDKTGTF+ + +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQI G+D+HH PS I+ +
Sbjct: 95 SPIGQKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVI 206
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match:
A0A6H5K236_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K236_9PHAE)
HSP 1 Score: 149 bits (375), Expect = 3.680e-41
Identity = 67/112 (59.82%), Postives = 86/112 (76.79%), Query Frame = 1
Query: 220 SPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHHLG---PSPIRIQAGV 546
SPIGQKP+DVEA+PM+Y+DV +Y+ +WE A+KKE+DGHDKTGTF+ + +PEGRK + SKWVF+WK E G+I DFKARMVARGFS+I G+D+HH PS I +
Sbjct: 3 SPIGQKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTKEKGLIVDFKARMVARGFSRIPGIDFHHSSSACPSAASINTVI 114
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match:
A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE)
HSP 1 Score: 152 bits (385), Expect = 9.520e-41
Identity = 66/97 (68.04%), Postives = 83/97 (85.57%), Query Frame = 1
Query: 220 SPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 510
SPIGQKP+DVEA+PM+Y+DV + + +WE A+KKE+DGHDKTGTF+ + +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQIHG+D+HH
Sbjct: 95 SPIGQKPSDVEAVPMTYKDVMCSKCKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHH 191
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match:
A0A6H5JUR2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR2_9PHAE)
HSP 1 Score: 149 bits (376), Expect = 5.870e-40
Identity = 67/93 (72.04%), Postives = 81/93 (87.10%), Query Frame = 1
Query: 232 QKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 510
+KPNDVEALP++YEDVK +YR W+EAIKKEMDGH+KTGTFS I+ +PEGRK VS+KWVF +K +E G+I DFKAR+VARGFSQ+HG DYHH
Sbjct: 211 KKPNDVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHH 303
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match:
A0A6H5JVF9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF9_9PHAE)
HSP 1 Score: 147 bits (370), Expect = 1.380e-39
Identity = 64/112 (57.14%), Postives = 87/112 (77.68%), Query Frame = 1
Query: 220 SPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH---LGPSPIRIQAGV 546
SPIGQKP+DVEA+PM+Y+DV R +Y+ +WE +KK++DGHDKTGTF+ + +P+GRK + SKWVF+W+ NE G+I DFK RMV RGF QI G+D+HH + PS I+A +
Sbjct: 89 SPIGQKPSDVEAVPMTYKDVTRSKYKVFWEATMKKDIDGHDKTGTFTNVKELPDGRKAIGSKWVFSWRTNEKGLIVDFKVRMVPRGFPQIPGIDFHHSYSVCPSAASIKAVI 200
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match:
A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)
HSP 1 Score: 154 bits (388), Expect = 2.590e-39
Identity = 69/114 (60.53%), Postives = 89/114 (78.07%), Query Frame = 1
Query: 214 VPSPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHHLG---PSPIRIQAGV 546
+ SPIGQKP+DVEA+PM+Y+DV +Y+ +WE A+KKE+DGHDKTGTF+ + +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQI G+D+HH PS I+ +
Sbjct: 344 ITSPIGQKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVI 457
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match:
A0A6H5JXX7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX7_9PHAE)
HSP 1 Score: 151 bits (382), Expect = 3.460e-39
Identity = 68/112 (60.71%), Postives = 87/112 (77.68%), Query Frame = 1
Query: 220 SPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHHLG---PSPIRIQAGV 546
SPIGQKP+DVEA+PM+Y DV +Y+ +WE A+KKE+DGHDKTGTF+ + +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQI G+D++H PS I+ +
Sbjct: 295 SPIGQKPSDVEAVPMTYRDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFYHSSSACPSAASIKTAI 406
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.453.1
>prot_C-linearis_contig10.453.1 ID=prot_C-linearis_contig10.453.1|Name=mRNA_C-linearis_contig10.453.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=97bp
MSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWV
FAWKINELGVIADFKARMVARGFSQIHGVDYHHLGPSPIRIQAGVR*
back to topmRNA from alignment at C-linearis_contig10:453476..454151+
Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.453.1 ID=mRNA_C-linearis_contig10.453.1|Name=mRNA_C-linearis_contig10.453.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=676bp|location=Sequence derived from alignment at C-linearis_contig10:453476..454151+ (Chordaria linearis ClinC8C monoicous)
CAGCAGCCATGGATGGCGAACACGGTGAGGAGGTCGTCGCAGAGTACGTC
GCGAATTCGCTGCTGGAAGAGCGCCTGGAGGAAGAACGGGAGCTCCAGGA
GTTCCTGCCCACGCCGCAGGAGCTGGAGGAGATGATGGAAGCATACGAGG
CGCTAGCTGCTCAAGTTGAAGAGGCCGCCCGGTCGACGCAAGGGCCGCCC
CAACCAGAGCTAAGTACCCTCGCCAATCGGGCAGAAACCTAACGATGTAG
AGGCTCTCCCGATGTCGTACGAGGACGTGAAACGGCCTAGGTACAGGACG
TGGTGGGAAGAGGCAATAAAGAAAGAGATGGACGGGCACGATAAAACGGG
GACCTTTTCGGCGATAGACTCAGTGCCGGAGGGGCGGAAGCCAGTCAGCT
CGAAATGGGTCTTCGCATGGAAAATCAACGAGTTGGGTGTGATCGCTGAC
TTTAAGGCTCGTATGGTTGCGCGTGGATTCTCCCAAATCCACGGGGTAGA
CTACCACCACCTAGGTCCATCCCCGATAAGGATACAGGCAGGCGTTCGAT
GACAGGGATTGCCGTGACTCTAGGAGGTGCCGTGGTGAGCCACACTAGCA
AGACGCAGCGTGTCGTGGCCCTGTCAACCGCGGAGGCAGAATATATTGCA
GCCGGGGAAGGCGTCAAGGAAGCTAT
back to topCoding sequence (CDS) from alignment at C-linearis_contig10:453476..454151+
>mRNA_C-linearis_contig10.453.1 ID=mRNA_C-linearis_contig10.453.1|Name=mRNA_C-linearis_contig10.453.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at C-linearis_contig10:453476..454151+ (Chordaria linearis ClinC8C monoicous)
ATGTCGTACGAGGACGTGAAACGGCCTAGGTACAGGACGTGGTGGGAAGA
GGCAATAAAGAAAGAGATGGACGGGCACGATAAAACGGGGACCTTTTCGG
CGATAGACTCAGTGCCGGAGGGGCGGAAGCCAGTCAGCTCGAAATGGGTC
TTCGCATGGAAAATCAACGAGTTGGGTGTGATCGCTGACTTTAAGGCTCG
TATGGTTGCGCGTGGATTCTCCCAAATCCACGGGGTAGACTACCACCACC
TAGGTCCATCCCCGATAAGGATACAGGCAGGCGTTCGATGAATGTCGTAC
GAGGACGTGAAACGGCCTAGGTACAGGACGTGGTGGGAAGAGGCAATAAA
GAAAGAGATGGACGGGCACGATAAAACGGGGACCTTTTCGGCGATAGACT
CAGTGCCGGAGGGGCGGAAGCCAGTCAGCTCGAAATGGGTCTTCGCATGG
AAAATCAACGAGTTGGGTGTGATCGCTGACTTTAAGGCTCGTATGGTTGC
GCGTGGATTCTCCCAAATCCACGGGGTAGACTACCACCACCTAGGTCCAT
CCCCGATAAGGATACAGGCAGGCGTTCGATGA
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