mRNA_A-nodosum_M_contig1021.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1021.4.1
Unique NamemRNA_A-nodosum_M_contig1021.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1021.4.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.140e-17
Identity = 57/151 (37.75%), Postives = 78/151 (51.66%), Query Frame = 1 
Query:  322 EEEFGQLSFLLGEPQVCLETSTDAAAALLEQAVSDPQKIRDKLLQLAVQLAGECQHSAPLKRWDPKDPKANTTCGKLQAQVVADVDIEAIFKRQKEQGQKGRPDDVPYVLARSVRSNLQYQAAAEIGARGGGNMAVRGKCMERAMQMFCGK 774
            EE   +L+ L+ +        +  A ALL+ A+ +P  +R  L + A   A  C    PL +W   D        + QA ++A V I+ +  RQK +  +G  D+VPYVLAR+VRSNLQY AA EIGA G GN   RG        MFC +
Sbjct:   26 EELDDELATLVADEPPRAAKQSPLATALLKTALENPGGVRSLLREQAETAAQGCGCQTPLAQWKKGDXXXXXXXXRQQAHIIAGVSIQHVLDRQKARDSEG--DNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRG--------MFCSR 166
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1021.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNQ5_ECTSI1.140e-1737.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1021contigA-nodosum_M_contig1021:101797..103076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size832
Hectar predicted targeting categoryother localisation
Exons2
Cds size729
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866385.8726878-UTR-A-nodosum_M_contig1021:101796..1018031680866385.8726878-UTR-A-nodosum_M_contig1021:101796..101803Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1021 101797..101803 -
1680866385.929318-UTR-A-nodosum_M_contig1021:102980..1030761680866385.929318-UTR-A-nodosum_M_contig1021:102980..103076Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1021 102981..103076 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866385.8923879-CDS-A-nodosum_M_contig1021:101803..1020431680866385.8923879-CDS-A-nodosum_M_contig1021:101803..102043Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1021 101804..102043 -
1680866385.9135904-CDS-A-nodosum_M_contig1021:102491..1029801680866385.9135904-CDS-A-nodosum_M_contig1021:102491..102980Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1021 102492..102980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1021.4.1prot_A-nodosum_M_contig1021.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1021 101804..102980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1021.4.1

>prot_A-nodosum_M_contig1021.4.1 ID=prot_A-nodosum_M_contig1021.4.1|Name=mRNA_A-nodosum_M_contig1021.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=243bp
MSEDEERVSKRARTNYPSEVSFGDLSKEENEHSVAQVSRCADTGACAWTE
DGTKPQLLGGLGEEVGGGSSLQQTAEEEFGQLSFLLGEPQVCLETSTDAA
AALLEQAVSDPQKIRDKLLQLAVQLAGECQHSAPLKRWDPKDPKANTTCG
KLQAQVVADVDIEAIFKRQKEQGQKGRPDDVPYVLARSVRSNLQYQAAAE
IGARGGGNMAVRGKCMERAMQMFCGKKQEGIPRAVVEALLRY*
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mRNA from alignment at A-nodosum_M_contig1021:101797..103076-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1021.4.1 ID=mRNA_A-nodosum_M_contig1021.4.1|Name=mRNA_A-nodosum_M_contig1021.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1280bp|location=Sequence derived from alignment at A-nodosum_M_contig1021:101797..103076- (Ascophyllum nodosum dioecious)
CAATAATACTACCAACGTCTCTGTCAACCTCCACGGTATCTCTGATACAT
CCACCCACGGAGCCACCCCATAGCACCAACGACGAATACTTGCGTGATGT
CGGAAGATGAGGAAAGGGTTTCGAAGAGAGCGCGAACAAACTACCCAAGC
GAAGTGAGCTTTGGCGACCTGAGCAAAGAAGAGAACGAGCATAGTGTCGC
ACAAGTCAGCCGATGCGCAGACACCGGCGCCTGCGCTTGGACAGAAGACG
GCACCAAGCCACAGCTTCTGGGCGGTCTAGGCGAGGAGGTCGGTGGAGGC
TCCAGTTTGCAGCAGACGGCAGAAGAAGAGTTTGGTCAACTTTCTTTTCT
GTTGGGCGAGCCACAAGTTTGTTTAGAAACATCTACAGACGCGGCAGCAG
CTTTGTTGGAGCAGGCGGTCTCCGACCCGCAAAAGATTCGGGACAAGCTC
TTGCAGCTAGCAGTCCAGCTAGCTGGAGAGTGCCAGCACTCTGCACCTCT
CAAGAGGTGGGATCCTAAGGACCCCAAGGCGAATACTACGTGTGGCAAGC
TGCAGGCGCAGGTGGTAGCTGATGTCGACATCGAGGTAAGACGTTTTGTC
CTTGCACAACAACCAAAAGTACAACTGTTACATCAATACACAAAACGTAC
TGCTGTAGCTCGAGCTCGAAGCGATTGTGTGGCCTTTGTCCTCTCTCCGA
TACTATCAAACTAATAAGCGGGTTGACGCGGGACAGAGGCCGAACCTGTC
TCGCGAGGCCAAAAATTCTCATACGCAAACAGAGGTAGGGAAACAAGCAT
TTCCATTTTTCAGCTGACTATGAGCAAGACGGTCGATAATTTCCCGGTTG
ATCCATAATCTGCTGTATAAGTGATGACCATACAGATATACAGTACATTT
GTACACACAAACATGAAACACATCCACGACTGTAGTGAAGGGTCCGTACA
CCCCATCGGTCTCTCACCAGCTCACACTCGTTAGTGTAAAACAAACACAA
CTCCCGCCGACGTCTGCTGTCCATTTCTTACAGGCAATCTTCAAGCGTCA
GAAAGAACAGGGGCAGAAAGGCCGGCCGGACGATGTCCCATATGTGTTAG
CGCGCAGTGTACGTAGCAACTTGCAATACCAAGCGGCGGCGGAGATCGGG
GCGAGGGGGGGCGGTAACATGGCTGTTCGCGGCAAGTGCATGGAACGCGC
CATGCAGATGTTTTGCGGCAAGAAACAGGAGGGTATACCTCGGGCAGTAG
TGGAAGCTCTGCTGCGTTACTAATAATGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1021:101797..103076-

>mRNA_A-nodosum_M_contig1021.4.1 ID=mRNA_A-nodosum_M_contig1021.4.1|Name=mRNA_A-nodosum_M_contig1021.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=729bp|location=Sequence derived from alignment at A-nodosum_M_contig1021:101797..103076- (Ascophyllum nodosum dioecious)
ATGTCGGAAGATGAGGAAAGGGTTTCGAAGAGAGCGCGAACAAACTACCC
AAGCGAAGTGAGCTTTGGCGACCTGAGCAAAGAAGAGAACGAGCATAGTG
TCGCACAAGTCAGCCGATGCGCAGACACCGGCGCCTGCGCTTGGACAGAA
GACGGCACCAAGCCACAGCTTCTGGGCGGTCTAGGCGAGGAGGTCGGTGG
AGGCTCCAGTTTGCAGCAGACGGCAGAAGAAGAGTTTGGTCAACTTTCTT
TTCTGTTGGGCGAGCCACAAGTTTGTTTAGAAACATCTACAGACGCGGCA
GCAGCTTTGTTGGAGCAGGCGGTCTCCGACCCGCAAAAGATTCGGGACAA
GCTCTTGCAGCTAGCAGTCCAGCTAGCTGGAGAGTGCCAGCACTCTGCAC
CTCTCAAGAGGTGGGATCCTAAGGACCCCAAGGCGAATACTACGTGTGGC
AAGCTGCAGGCGCAGGTGGTAGCTGATGTCGACATCGAGGCAATCTTCAA
GCGTCAGAAAGAACAGGGGCAGAAAGGCCGGCCGGACGATGTCCCATATG
TGTTAGCGCGCAGTGTACGTAGCAACTTGCAATACCAAGCGGCGGCGGAG
ATCGGGGCGAGGGGGGGCGGTAACATGGCTGTTCGCGGCAAGTGCATGGA
ACGCGCCATGCAGATGTTTTGCGGCAAGAAACAGGAGGGTATACCTCGGG
CAGTAGTGGAAGCTCTGCTGCGTTACTAA
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