mRNA_A-nodosum_M_contig9600.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9600.7.1
Unique NamemRNA_A-nodosum_M_contig9600.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9600.7.1 vs. uniprot
Match: A0A6H5K9K1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K1_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 7.380e-65
Identity = 110/161 (68.32%), Postives = 131/161 (81.37%), Query Frame = 1
Query:    4 IDELLAFRTQNAKKAVHSFCPL---GGVGGTADSPG------------VPRRLWQRLALAAGVTAGEKWAEVAKAKLVALAQQLTVCEFEVVGKGSFKEEFVTCGGVSLSELDMRTMESRGVPGLYFAGEVVDIDGVTGGYNFQSAWTTGWVAGSAIGARA 441
            +D+L AFRT+NAKK V++FCP+   G +G +  S G            +PRRLWQ LALAAGV AG+KWA+++KAKL ALAQQLT CEF++VGKGSFKEEFVTCGGV+LS LDMRTMES+ V GL+FAGEVVD+DGVTGG+NFQSAWTTGWVAGSAIG+ A
Sbjct:  319 LDDLQAFRTRNAKKTVYAFCPVVGSGALGSSVSSGGRPQSPQPPSISSLPRRLWQSLALAAGVAAGDKWADLSKAKLSALAQQLTACEFQIVGKGSFKEEFVTCGGVALSALDMRTMESKTVAGLHFAGEVVDVDGVTGGFNFQSAWTTGWVAGSAIGSAA 479          
BLAST of mRNA_A-nodosum_M_contig9600.7.1 vs. uniprot
Match: D8FTQ1_9CYAN (Uncharacterized protein n=1 Tax=Kamptonema sp. PCC 6506 TaxID=272129 RepID=D8FTQ1_9CYAN)

HSP 1 Score: 157 bits (397), Expect = 7.950e-47
Identity = 75/141 (53.19%), Postives = 105/141 (74.47%), Query Frame = 1
Query:   10 ELLAFRTQNAKKAVHSFCPLGGVGGTADSPGVPRRLWQRLALAAGVTAGEKWAEVAKAKLVALAQQLTVCEFEVVGKGSFKEEFVTCGGVSLSELDMRTMESRGVPGLYFAGEVVDIDGVTGGYNFQSAWTTGWVAGSAIG 432
            +LLA ++Q  ++A+ + CPL           +PRRLW+ L +A G+ + ++W+E++   L  L Q+L+  E+++ GKG+FKEEFVTCGGV+L E+D +TMESR  PGLYFAGE++DIDGVTGG+NFQSAWTT W+AG AIG
Sbjct:    4 QLLAVKSQLPRRAIATSCPLP----------IPRRLWEHLTVAVGIDSEKRWSELSNKSLNQLIQELSQGEYKIKGKGAFKEEFVTCGGVNLKEVDFKTMESRCCPGLYFAGEILDIDGVTGGFNFQSAWTTAWLAGQAIG 134          
BLAST of mRNA_A-nodosum_M_contig9600.7.1 vs. uniprot
Match: A0A835ZA93_9STRA (HI0933 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA93_9STRA)

HSP 1 Score: 163 bits (412), Expect = 3.080e-45
Identity = 79/139 (56.83%), Postives = 101/139 (72.66%), Query Frame = 1
Query:   25 RTQNAKKAVHSFCPLGGVGGTADSPGVPRRLWQRLALAAGVTAGEKWAEVAKAKLVALAQQLTVCEFEVVGKGSFKEEFVTCGGVSLSELDMRTMESRGVPGLYFAGEVVDIDGVTGGYNFQSAWTTGWVAGSAIGARA 441
            RT +A++ V ++CPL       +   VP+RLW+ L   AG+   E+W   + AKL ALA+    C+  VVGKG+FK+EFVTCGGV+L  LDM+TMESR VPGL+FAGE+VD+DG+TGGYNFQSAWTT W AG AIG+ A
Sbjct:  344 RTASARREVATYCPL-------EQASVPKRLWKALVQHAGIGDNEQWGGCSNAKLAALARNAAACDLSVVGKGAFKDEFVTCGGVALENLDMKTMESRTVPGLHFAGEIVDVDGITGGYNFQSAWTTSWCAGHAIGSSA 475          
BLAST of mRNA_A-nodosum_M_contig9600.7.1 vs. uniprot
Match: UPI001F46DD27 (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Leptodesmis sichuanensis TaxID=2906798 RepID=UPI001F46DD27)

HSP 1 Score: 158 bits (400), Expect = 4.660e-44
Identity = 77/141 (54.61%), Postives = 103/141 (73.05%), Query Frame = 1
Query:   10 ELLAFRTQNAKKAVHSFCPLGGVGGTADSPGVPRRLWQRLALAAGVTAGEKWAEVAKAKLVALAQQLTVCEFEVVGKGSFKEEFVTCGGVSLSELDMRTMESRGVPGLYFAGEVVDIDGVTGGYNFQSAWTTGWVAGSAIG 432
            +++A R+Q AKK++ + CP+           +PRRLW+RL  A G+  G++WAE++   L  L Q+LT  +F + GKG+FKEEFVTCGGV L E+D +TM+SR  PGLY AGE++DIDGVTGG+NFQSAWTT W+AG AIG
Sbjct:  280 QVVAVRSQLAKKSIVANCPIP----------IPRRLWERLTAAVGIAPGDRWAELSNKALNQLLQELTQGQFLIRGKGAFKEEFVTCGGVRLQEVDFKTMQSRQCPGLYLAGEILDIDGVTGGFNFQSAWTTAWLAGQAIG 410          
BLAST of mRNA_A-nodosum_M_contig9600.7.1 vs. uniprot
Match: A0A8J7JAB2_9CYAN (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Lusitaniella coriacea LEGE 07157 TaxID=945747 RepID=A0A8J7JAB2_9CYAN)

HSP 1 Score: 158 bits (399), Expect = 5.810e-44
Identity = 78/141 (55.32%), Postives = 101/141 (71.63%), Query Frame = 1
Query:   10 ELLAFRTQNAKKAVHSFCPLGGVGGTADSPGVPRRLWQRLALAAGVTAGEKWAEVAKAKLVALAQQLTVCEFEVVGKGSFKEEFVTCGGVSLSELDMRTMESRGVPGLYFAGEVVDIDGVTGGYNFQSAWTTGWVAGSAIG 432
            ELLA +++  K+ + + CPL           +P+RLWQRL   AG+     WAE++K  L AL  +LT  ++E+ GKG FKEEFVTCGG+ L E+D +TMESR  PGLYFAGE++DIDGVTGG+NFQSAWTTGW+AG A+G
Sbjct:  275 ELLAIKSRTPKRQISTNCPLP----------IPKRLWQRLVEIAGIERQTPWAELSKKGLNALVGELTQGKYEIQGKGVFKEEFVTCGGIKLQEVDFKTMESRKCPGLYFAGEILDIDGVTGGFNFQSAWTTGWLAGQAMG 405          
BLAST of mRNA_A-nodosum_M_contig9600.7.1 vs. uniprot
Match: UPI0019AD10DA (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=UPI0019AD10DA)

HSP 1 Score: 158 bits (399), Expect = 5.930e-44
Identity = 78/143 (54.55%), Postives = 105/143 (73.43%), Query Frame = 1
Query:   10 ELLAFRTQNAKKAVHSFCPLGGVGGTADSPGVPRRLWQRLALAAGVTAGEKWAEVAKAKLVALAQQLTVCEFEVVGKGSFKEEFVTCGGVSLSELDMRTMESRGVPGLYFAGEVVDIDGVTGGYNFQSAWTTGWVAGSAIGAR 438
            +LLA + Q  ++A+ + CP+           +PRRLW+RL    G+TA  +WAE++   L  L Q+LT  ++ V GKG+FKEEFVTCGG+SL E+D +TMESR  PGL+FAGE++DIDGVTGG+NFQSAWTTGW+AG A+G+R
Sbjct:  279 QLLAVKAQLPRRAIATSCPVL----------IPRRLWERLTNHVGITAETRWAELSNKTLNLLLQELTRGQYTVNGKGAFKEEFVTCGGISLKEVDFKTMESRLCPGLHFAGEILDIDGVTGGFNFQSAWTTGWIAGQAMGSR 411          
BLAST of mRNA_A-nodosum_M_contig9600.7.1 vs. uniprot
Match: UPI0019AC7E13 (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Leptolyngbyaceae cyanobacterium LF-bin-369 TaxID=2804781 RepID=UPI0019AC7E13)

HSP 1 Score: 157 bits (398), Expect = 9.770e-44
Identity = 79/141 (56.03%), Postives = 102/141 (72.34%), Query Frame = 1
Query:   10 ELLAFRTQNAKKAVHSFCPLGGVGGTADSPGVPRRLWQRLALAAGVTAGEKWAEVAKAKLVALAQQLTVCEFEVVGKGSFKEEFVTCGGVSLSELDMRTMESRGVPGLYFAGEVVDIDGVTGGYNFQSAWTTGWVAGSAIG 432
            EL+  +TQ AKK+V   CP+           +PRRLW+ L  AAG+ +  +W++V+K  L AL ++L   E+ + GKG FK+EFVTCGGV L E+D +TMESR  PGLYFAGEV+DIDGVTGG+NFQSAW+TGW+AG AIG
Sbjct:  286 ELMKVKTQLAKKSVGPNCPVI----------LPRRLWESLIAAAGIPSELRWSDVSKVMLTALLKELLQGEYAITGKGVFKDEFVTCGGVDLKEVDFKTMESRTCPGLYFAGEVLDIDGVTGGFNFQSAWSTGWIAGQAIG 416          
BLAST of mRNA_A-nodosum_M_contig9600.7.1 vs. uniprot
Match: K9YSC3_DACSA (Flavoprotein, HI0933 family n=2 Tax=Cyanobacteria TaxID=1117 RepID=K9YSC3_DACSA)

HSP 1 Score: 157 bits (397), Expect = 1.060e-43
Identity = 73/140 (52.14%), Postives = 107/140 (76.43%), Query Frame = 1
Query:   10 ELLAFRTQNAKKAVHSFCPLGGVGGTADSPGVPRRLWQRLALAAGVTAGEKWAEVAKAKLVALAQQLTVCEFEVVGKGSFKEEFVTCGGVSLSELDMRTMESRGVPGLYFAGEVVDIDGVTGGYNFQSAWTTGWVAGSAI 429
            +L+A + Q  ++ V SF P+           +PRRLW++LALA+G++A ++WAEV+K +++ LA +L +  +++ GKG FKEEFVTCGGV L E++ +TMES+ V GLYFAGE++DIDG+TGG+NFQ+AWTTGW+AG+ I
Sbjct:  274 QLMAQKEQTPRRQVVSFSPVS----------IPRRLWEKLALASGISATQRWAEVSKKQIITLANELIMGNYQIQGKGVFKEEFVTCGGVDLKEVNFKTMESKLVAGLYFAGEILDIDGITGGFNFQNAWTTGWLAGNGI 403          
BLAST of mRNA_A-nodosum_M_contig9600.7.1 vs. uniprot
Match: K9WJR4_9CYAN (Flavoprotein, HI0933 family n=5 Tax=Oscillatoriales TaxID=1150 RepID=K9WJR4_9CYAN)

HSP 1 Score: 157 bits (398), Expect = 1.210e-43
Identity = 79/142 (55.63%), Postives = 103/142 (72.54%), Query Frame = 1
Query:   13 LLAFRTQNAKKAVHSFCPLGGVGGTADSPGVPRRLWQRLALAAGVTAGEKWAEVAKAKLVALAQQLTVCEFEVVGKGSFKEEFVTCGGVSLSELDMRTMESRGVPGLYFAGEVVDIDGVTGGYNFQSAWTTGWVAGSAIGAR 438
            LLA ++Q  ++ V + CP+           +P+RLW+ L  + G+ A E+WAEV+K  L  L Q+L   ++ + GKG FKEEFVTCGGVSL E+D +TMESR VPGLYFAGE++DIDGVTGG+NFQSAWTTGW+AG A+G R
Sbjct:  298 LLAVKSQLPRRQVTTSCPVP----------IPKRLWESLVASVGIGAEERWAEVSKKALNQLIQELIQGQYSIKGKGIFKEEFVTCGGVSLKEVDFKTMESRLVPGLYFAGEILDIDGVTGGFNFQSAWTTGWLAGQAMGNR 429          
BLAST of mRNA_A-nodosum_M_contig9600.7.1 vs. uniprot
Match: A0A0F5YCR6_9CYAN (Flavoprotein n=1 Tax=Limnoraphis robusta CS-951 TaxID=1637645 RepID=A0A0F5YCR6_9CYAN)

HSP 1 Score: 157 bits (398), Expect = 1.330e-43
Identity = 78/142 (54.93%), Postives = 104/142 (73.24%), Query Frame = 1
Query:    7 DELLAFRTQNAKKAVHSFCPLGGVGGTADSPGVPRRLWQRLALAAGVTAGEKWAEVAKAKLVALAQQLTVCEFEVVGKGSFKEEFVTCGGVSLSELDMRTMESRGVPGLYFAGEVVDIDGVTGGYNFQSAWTTGWVAGSAIG 432
            +ELLA ++Q +++ V S CP+           +PRRLW++L LA G+   ++W EV+   +  L Q+LT  +F++ GKG FKEEFVTCGGVSL E+D +TMESR  P LYFAGE++DIDGVTGG+NFQSAWTTGW+AG A+G
Sbjct:  302 EELLAVKSQLSQRVVSSSCPVL----------IPRRLWKQLTLAVGIDEQKRWGEVSNKVINQLIQELTQGKFQINGKGVFKEEFVTCGGVSLKEVDFKTMESRCCPNLYFAGEILDIDGVTGGFNFQSAWTTGWLAGQAMG 433          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9600.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9K1_9PHAE7.380e-6568.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8FTQ1_9CYAN7.950e-4753.19Uncharacterized protein n=1 Tax=Kamptonema sp. PCC... [more]
A0A835ZA93_9STRA3.080e-4556.83HI0933 family protein n=1 Tax=Tribonema minus TaxI... [more]
UPI001F46DD274.660e-4454.61NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Leptod... [more]
A0A8J7JAB2_9CYAN5.810e-4455.32NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Lusita... [more]
UPI0019AD10DA5.930e-4454.55NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Verruc... [more]
UPI0019AC7E139.770e-4456.03NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Leptol... [more]
K9YSC3_DACSA1.060e-4352.14Flavoprotein, HI0933 family n=2 Tax=Cyanobacteria ... [more]
K9WJR4_9CYAN1.210e-4355.63Flavoprotein, HI0933 family n=5 Tax=Oscillatoriale... [more]
A0A0F5YCR6_9CYAN1.330e-4354.93Flavoprotein n=1 Tax=Limnoraphis robusta CS-951 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9600contigA-nodosum_M_contig9600:11246..12120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1173027.Mic7113_4062
PFAMsHI0933_like
Model size446
Max annot lvl1117|Cyanobacteria
KEGG koko:K07007
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.98e-44
EggNOG OGsCOG2081@1|root,COG2081@2|Bacteria,1FZZ1@1117|Cyanobacteria,1H7GT@1150|Oscillatoriales
DescriptionPFAM HI0933-like protein
Cds size444
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870475.900334-CDS-A-nodosum_M_contig9600:11245..114731680870475.900334-CDS-A-nodosum_M_contig9600:11245..11473Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9600 11246..11473 +
1680870475.9186978-CDS-A-nodosum_M_contig9600:11904..121201680870475.9186978-CDS-A-nodosum_M_contig9600:11904..12120Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9600 11905..12120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9600.7.1prot_A-nodosum_M_contig9600.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9600 11246..12120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9600.7.1

>prot_A-nodosum_M_contig9600.7.1 ID=prot_A-nodosum_M_contig9600.7.1|Name=mRNA_A-nodosum_M_contig9600.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=148bp
AIDELLAFRTQNAKKAVHSFCPLGGVGGTADSPGVPRRLWQRLALAAGVT
AGEKWAEVAKAKLVALAQQLTVCEFEVVGKGSFKEEFVTCGGVSLSELDM
RTMESRGVPGLYFAGEVVDIDGVTGGYNFQSAWTTGWVAGSAIGARAA
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mRNA from alignment at A-nodosum_M_contig9600:11246..12120+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9600.7.1 ID=mRNA_A-nodosum_M_contig9600.7.1|Name=mRNA_A-nodosum_M_contig9600.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=875bp|location=Sequence derived from alignment at A-nodosum_M_contig9600:11246..12120+ (Ascophyllum nodosum dioecious)
GCGATCGATGAGCTTCTGGCGTTCAGGACGCAAAACGCTAAGAAGGCTGT ACATTCCTTCTGTCCCCTGGGGGGCGTTGGGGGCACGGCTGACTCCCCGG GGGTACCCCGACGGCTGTGGCAGAGGCTGGCCCTGGCGGCTGGCGTAACC GCGGGGGAAAAGTGGGCGGAAGTCGCCAAGGCAAAGCTGGTGGCGTTGGC GCAGCAGCTTACGGTCTGCGAGTTTGAGGTGGGGTCACGTTCGCGTTACA CCAAAAACAAAAGCAAAACAAAACGCCGGTGATGAGCGATTTTGGTATTA TTTTCGTTACTTCAGTGCTGTGGTTCCCCACCGCTCCACTGCCCTTTAGA TACTAAATACACAATAAACAAGTAGCAAACAAGGTGACCACTTACATTCA GATCAGAGTTGTTCCTGGCATATGATTGTTATTCAGTAATCTTAGAAAAA CGCCCGAAAGTTTGCTGCCCCGAGATATGTCTGAAACAAACAAGTAAAAG CGTGCCTGTAAAATCAGAGTACGTAAGAGTTGTCGCCCTGCGCTTTCCAG CTACAAAGCGGCATTTGTGAACACAGCTGCGTTCTCCAATAATATCGGTC ATTCGAACCAAGCATTGGACATAATGAATCGCAACTTTCCGCTGAACACC CTGTTCTAGGTCGTCGGGAAAGGATCGTTCAAAGAGGAGTTCGTCACATG CGGAGGCGTTTCGTTGTCCGAGCTCGACATGCGAACCATGGAAAGTCGCG GCGTCCCTGGGCTTTACTTCGCGGGGGAGGTAGTGGACATCGATGGTGTG ACCGGGGGATACAATTTCCAGAGTGCGTGGACCACCGGCTGGGTGGCCGG AAGCGCAATCGGCGCCAGGGCGGCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9600:11246..12120+

>mRNA_A-nodosum_M_contig9600.7.1 ID=mRNA_A-nodosum_M_contig9600.7.1|Name=mRNA_A-nodosum_M_contig9600.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at A-nodosum_M_contig9600:11246..12120+ (Ascophyllum nodosum dioecious)
GCGATCGATGAGCTTCTGGCGTTCAGGACGCAAAACGCTAAGAAGGCTGT
ACATTCCTTCTGTCCCCTGGGGGGCGTTGGGGGCACGGCTGACTCCCCGG
GGGTACCCCGACGGCTGTGGCAGAGGCTGGCCCTGGCGGCTGGCGTAACC
GCGGGGGAAAAGTGGGCGGAAGTCGCCAAGGCAAAGCTGGTGGCGTTGGC
GCAGCAGCTTACGGTCTGCGAGTTTGAGGTCGTCGGGAAAGGATCGTTCA
AAGAGGAGTTCGTCACATGCGGAGGCGTTTCGTTGTCCGAGCTCGACATG
CGAACCATGGAAAGTCGCGGCGTCCCTGGGCTTTACTTCGCGGGGGAGGT
AGTGGACATCGATGGTGTGACCGGGGGATACAATTTCCAGAGTGCGTGGA
CCACCGGCTGGGTGGCCGGAAGCGCAATCGGCGCCAGGGCGGCC
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