mRNA_A-nodosum_M_contig9600.5.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9600.5.2
Unique NamemRNA_A-nodosum_M_contig9600.5.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9600.5.2 vs. uniprot
Match: A0A835ZA93_9STRA (HI0933 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA93_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.450e-35
Identity = 74/163 (45.40%), Postives = 88/163 (53.99%), Query Frame = 1
Query:    4 IAQGCPRGSKQLIGPFSSLFGPADAAAWFRERGVALKTEGDGRMFPQSDDSQTIIDCLQ-------------------------------------------------------GKRIYAISCDYVLQATGAARGGHVWAKQLGHAVSPAVPSLFTLTVKDPR 327
            IAQG PRGS+QL+GP S+ FGP DAAAWFRERGV LKTE DGRMFP +D SQT+IDCL                                                        G   Y +S D+VL ATG++R G+ WA+QLGH +SP VPSLFT T++DPR
Sbjct:   59 IAQGYPRGSRQLLGPLSAAFGPRDAAAWFRERGVNLKTEADGRMFPVTDSSQTVIDCLAAAARAAGVRCASTSPLIALARESHPESATMGFEIDVVSGSSGAPLQHAALAPPRGGGSGYTLSADFVLLATGSSREGYKWAEQLGHTISPPVPSLFTFTIRDPR 221          
BLAST of mRNA_A-nodosum_M_contig9600.5.2 vs. uniprot
Match: A0A6H5K9K1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K1_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.140e-34
Identity = 80/176 (45.45%), Postives = 90/176 (51.14%), Query Frame = 1
Query:    1 LIAQGCPRGSKQLIGPFSSLFGPADAAAWFRERGVALKTEGDGRMFPQSDDSQTIIDCLQG-------------------------------------------------------------KRIYAISCDYVL------QATGAARGGHVWAKQLGHAVSPAVPSLFTLTVKDPR 327
            LIA+G PRGSKQLIGPF SLFGP DAAAWF  RGV LKTEGDGRMFP +DDSQTIIDCL+                                                              ++   +S   +        ATGAAR GH WAK+LGHAVSP VPSLFTLT++DPR
Sbjct:    6 LIAKGYPRGSKQLIGPFKSLFGPDDAAAWFGSRGVTLKTEGDGRMFPVTDDSQTIIDCLEEAARKASVEVVTSARVTSVLRAEPAEAGNATDGADGVEAQPQQQPPRFELEFATATPLPPAVRKALGVSAAGIAIAGEGSGATGAAREGHGWAKKLGHAVSPPVPSLFTLTIRDPR 181          
BLAST of mRNA_A-nodosum_M_contig9600.5.2 vs. uniprot
Match: UPI001881E821 (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Leptolyngbya cf. ectocarpi LEGE 11479 TaxID=1828722 RepID=UPI001881E821)

HSP 1 Score: 110 bits (275), Expect = 1.680e-26
Identity = 61/134 (45.52%), Postives = 74/134 (55.22%), Query Frame = 1
Query:    4 IAQGCPRGSKQLIGPFSSLFGPADAAAWFRERGVALKTEGDGRMFPQSDDSQTIIDCLQGKRIYA----------------------------ISCDYVLQATGAARGGHVWAKQLGHAVSPAVPSLFTLTVKD 321
            + Q  PRG K L GPFS  F P D  AW+++RGV LKTE DGRMFP +DDS TI+DCL+   I A                            + CD +L ATG++  GH  A+ LGH + P VPSLFT TVKD
Sbjct:   64 LVQHYPRGGKALRGPFSR-FQPQDTIAWYQQRGVKLKTEADGRMFPVTDDSDTIVDCLRKAAIKAGVTIKTRSPVRSVNKTDSGFGLGFKDGDVRCDRILLATGSSPQGHRIARSLGHTIEPPVPSLFTFTVKD 196          
BLAST of mRNA_A-nodosum_M_contig9600.5.2 vs. uniprot
Match: U9VMR9_9CYAN (Hi0933 family n=1 Tax=Leptolyngbya sp. Heron Island J TaxID=1385935 RepID=U9VMR9_9CYAN)

HSP 1 Score: 110 bits (275), Expect = 1.830e-26
Identity = 62/134 (46.27%), Postives = 74/134 (55.22%), Query Frame = 1
Query:    4 IAQGCPRGSKQLIGPFSSLFGPADAAAWFRERGVALKTEGDGRMFPQSDDSQTIIDCLQGKRIYA----------------------------ISCDYVLQATGAARGGHVWAKQLGHAVSPAVPSLFTLTVKD 321
            + Q  PRGSK L G FS  F P D  AW+++RGV LKTE DGRMFP +DDS TIIDCL    + A                            +SCD +L ATG++  GH  AK LGH + P VPSLFT T+KD
Sbjct:   67 LVQNYPRGSKALRGAFSR-FQPKDTIAWYQQRGVKLKTEADGRMFPVTDDSGTIIDCLMQTALRAGVTIKTRSPVKQVTATHPGFLIGLKDGEVSCDRILLATGSSPQGHRIAKSLGHRIEPPVPSLFTFTIKD 199          
BLAST of mRNA_A-nodosum_M_contig9600.5.2 vs. uniprot
Match: A0A847HXD0_9DEIN (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Deinococcales bacterium TaxID=2478479 RepID=A0A847HXD0_9DEIN)

HSP 1 Score: 110 bits (274), Expect = 2.280e-26
Identity = 63/139 (45.32%), Postives = 73/139 (52.52%), Query Frame = 1
Query:    1 LIAQGCPRGSKQLIGPFSSLFGPADAAAWFRERGVALKTEGDGRMFPQSDDSQTIIDCLQGKRIYA------------------------------ISCDYVLQATGAARGGHVWAKQLGHAVSPAVPSLFTLTVKDPR 327
            L+ +G PRG++ L GPF+  FGP D  AWFR RGVALKTE DGRMFP +DDS TI+DCL      A                              +  D VL ATG A  G+ WA  LGH + P VPSLFT  V D R
Sbjct:   57 LLVRGYPRGARALRGPFTR-FGPRDTVAWFRARGVALKTEPDGRMFPTTDDSATIVDCLVETARAAGVELRTRAPVTGVEAGTQAAFRVELRDGTSLPADRVLLATGGAPAGYRWAAALGHTIEPPVPSLFTFDVSDAR 194          
BLAST of mRNA_A-nodosum_M_contig9600.5.2 vs. uniprot
Match: A0A6I5PX31_9CYAN (Aminoacetone oxidase family FAD-binding enzyme (Fragment) n=1 Tax=Leptolyngbya sp. SIO3F4 TaxID=2607780 RepID=A0A6I5PX31_9CYAN)

HSP 1 Score: 105 bits (262), Expect = 4.230e-26
Identity = 61/135 (45.19%), Postives = 73/135 (54.07%), Query Frame = 1
Query:    4 IAQGCPRGSKQLIGPFSSLFGPADAAAWFRERGVALKTEGDGRMFPQSDDSQTIIDCL------QGKRIYAIS----------------------CDYVLQATGAARGGHVWAKQLGHAVSPAVPSLFTLTVKDP 324
            + Q  PRG K L G FS  F P D  AW+++RGV LKTE DGRMFP +DDS TI+ CL      +G  I   S                      CD +L ATG++  GH  AK LGH + P VPSLFT T+KDP
Sbjct:   63 LVQNYPRGGKALRGAFSR-FQPQDTIAWYQQRGVKLKTEADGRMFPVTDDSATIVTCLMKSAAKEGVTIQTRSPVKQVTKTTSGFKVSLKDSKVLCDRILLATGSSPQGHRIAKSLGHTIEPPVPSLFTFTIKDP 196          
BLAST of mRNA_A-nodosum_M_contig9600.5.2 vs. uniprot
Match: A0A8J7JAB2_9CYAN (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Lusitaniella coriacea LEGE 07157 TaxID=945747 RepID=A0A8J7JAB2_9CYAN)

HSP 1 Score: 107 bits (268), Expect = 1.770e-25
Identity = 63/139 (45.32%), Postives = 74/139 (53.24%), Query Frame = 1
Query:    1 LIAQGCPRGSKQLIGPFSSLFGPADAAAWFRERGVALKTEGDGRMFPQSDDSQTIIDCL------------QGKRIYAI------------------SCDYVLQATGAARGGHVWAKQLGHAVSPAVPSLFTLTVKDPR 327
            L+ Q  PRG K L G FS  F P D  AWF ERGV LKTE DGRMFP +DDS+TII+CL             G R+ ++                    D VL ATG+    + WAK LGH + P VPSLFT  +KDPR
Sbjct:   60 LLVQNYPRGGKVLRGAFSR-FQPQDTVAWFEERGVRLKTEADGRMFPVTDDSETIINCLLESAQEAGVQIRTGVRVESVCKDSEGKFEIGLRGGEMLQQDRVLLATGSNPSAYQWAKDLGHTIIPPVPSLFTFKIKDPR 197          
BLAST of mRNA_A-nodosum_M_contig9600.5.2 vs. uniprot
Match: A0A2T2W2P6_9CYAN (Aminoacetone oxidase family FAD-binding enzyme n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A2T2W2P6_9CYAN)

HSP 1 Score: 106 bits (265), Expect = 5.670e-25
Identity = 65/131 (49.62%), Postives = 76/131 (58.02%), Query Frame = 1
Query:   19 PRGSKQLIGPFSSLFGPADAAAWFRERGVALKTEGDGRMFPQSDDSQTIIDCLQGK------RIY---AIS--------------------CDYVLQATGAARGGHVWAKQLGHAVSPAVPSLFTLTVKDP 324
            PRGSK L GPFS  F P D  AWF +RGV LKTE DGRMFP +DDS TI+DCL G+      RIY   AI+                    CD +L ATG++  G+  A +LGH + P VPSLFT TV DP
Sbjct:   79 PRGSKVLRGPFSR-FQPQDTVAWFEQRGVRLKTEADGRMFPTTDDSGTIVDCLLGEARRLGIRIYTGQAIAHIQPDETGFGLTTRAGAEWRCDQLLLATGSSPNGYRLALKLGHDLVPPVPSLFTFTVPDP 208          
BLAST of mRNA_A-nodosum_M_contig9600.5.2 vs. uniprot
Match: A0A7W1U1K6_9BACT (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1U1K6_9BACT)

HSP 1 Score: 106 bits (264), Expect = 6.260e-25
Identity = 60/133 (45.11%), Postives = 73/133 (54.89%), Query Frame = 1
Query:    4 IAQGCPRGSKQLIGPFSSLFGPADAAAWFRERGVALKTEGDGRMFPQSDDSQTIIDCL------------------------QGKRIY-----AISCDYVLQATGAARGGHVWAKQLGHAVSPAVPSLFTLTV 315
            + Q  PRG K LIGPF   F P D   WF  RGV LKTE DGRMFP +DDSQTIIDCL                        +G  ++      + CD +L ATG++  GH WA++LGH+V  +VPSLFT  V
Sbjct:   63 LTQNYPRGDKALIGPFHR-FQPRDTVQWFESRGVMLKTENDGRMFPVTDDSQTIIDCLLLEAQRLGVSIRLKQRIERIVKQDKGFELHFAGGETLFCDGLLLATGSSPQGHQWAQELGHSVKSSVPSLFTFNV 194          
BLAST of mRNA_A-nodosum_M_contig9600.5.2 vs. uniprot
Match: UPI001C010508 (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Leptothoe kymatousa TaxID=2651727 RepID=UPI001C010508)

HSP 1 Score: 106 bits (264), Expect = 6.800e-25
Identity = 62/135 (45.93%), Postives = 75/135 (55.56%), Query Frame = 1
Query:    4 IAQGCPRGSKQLIGPFSSLFGPADAAAWFRERGVALKTEGDGRMFPQSDDSQTIIDCLQG---------------KRIYA-------------ISCDYVLQATGAARGGHVWAKQLGHAVSPAVPSLFTLTVKDP 324
            + Q  PRG K L G FS  F P D  AW+R+RGV LKTE DGRMFP +DDS TI+DCL                 K++ A             ++CD +L ATG +  GH  A  LGHA++  VPSLFT TVKDP
Sbjct:   68 LVQNYPRGGKALRGAFSR-FQPQDTIAWYRQRGVKLKTEADGRMFPVTDDSGTIVDCLVKAARTAGVTIKTRAAVKQVTATEPGFVLSLKTGKVACDRILCATGGSPQGHRIAHSLGHAIASPVPSLFTFTVKDP 201          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9600.5.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZA93_9STRA1.450e-3545.40HI0933 family protein n=1 Tax=Tribonema minus TaxI... [more]
A0A6H5K9K1_9PHAE2.140e-3445.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001881E8211.680e-2645.52NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Leptol... [more]
U9VMR9_9CYAN1.830e-2646.27Hi0933 family n=1 Tax=Leptolyngbya sp. Heron Islan... [more]
A0A847HXD0_9DEIN2.280e-2645.32NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Deinoc... [more]
A0A6I5PX31_9CYAN4.230e-2645.19Aminoacetone oxidase family FAD-binding enzyme (Fr... [more]
A0A8J7JAB2_9CYAN1.770e-2545.32NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Lusita... [more]
A0A2T2W2P6_9CYAN5.670e-2549.62Aminoacetone oxidase family FAD-binding enzyme n=4... [more]
A0A7W1U1K6_9BACT6.260e-2545.11NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Parach... [more]
UPI001C0105086.800e-2545.93NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Leptot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9600contigA-nodosum_M_contig9600:6735..7612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1385935.N836_28245
PFAMsHI0933_like
Model size330
Max annot lvl1117|Cyanobacteria
KEGG koko:K07007
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.01e-27
EggNOG OGsCOG2081@1|root,COG2081@2|Bacteria,1FZZ1@1117|Cyanobacteria,1H7GT@1150|Oscillatoriales
Ec32 ortholog descriptionHI0933 family protein
Ec32 orthologEc-27_004860.1
DescriptionPFAM HI0933-like protein
Cds size330
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870475.855357-CDS-A-nodosum_M_contig9600:6734..69151680870475.855357-CDS-A-nodosum_M_contig9600:6734..6915Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9600 6735..6915 +
1680870475.8670778-CDS-A-nodosum_M_contig9600:7463..76121680870475.8670778-CDS-A-nodosum_M_contig9600:7463..7612Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9600 7464..7612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9600.5.2prot_A-nodosum_M_contig9600.5.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9600 6735..7612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9600.5.2

>prot_A-nodosum_M_contig9600.5.2 ID=prot_A-nodosum_M_contig9600.5.2|Name=mRNA_A-nodosum_M_contig9600.5.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=110bp
LIAQGCPRGSKQLIGPFSSLFGPADAAAWFRERGVALKTEGDGRMFPQSD
DSQTIIDCLQGKRIYAISCDYVLQATGAARGGHVWAKQLGHAVSPAVPSL
FTLTVKDPR*
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mRNA from alignment at A-nodosum_M_contig9600:6735..7612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9600.5.2 ID=mRNA_A-nodosum_M_contig9600.5.2|Name=mRNA_A-nodosum_M_contig9600.5.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=878bp|location=Sequence derived from alignment at A-nodosum_M_contig9600:6735..7612+ (Ascophyllum nodosum dioecious)
CTGATCGCGCAGGGGTGCCCGAGGGGAAGCAAACAGTTGATTGGACCCTT CAGTTCCCTATTTGGTCCTGCAGACGCCGCCGCTTGGTTCCGCGAAAGAG GGGTGGCGCTCAAGACAGAGGGAGACGGTCGCATGTTTCCTCAATCGGAC GACAGTCAGACGATCATCGATTGCTTGCAAGGTTAACAGTACATACAGTA CATACATAGGCTCTAGAGTAGATTAGACTAGAGTAGGACTCCCTTTCTGC GGCTCGCCGAAGATCTCGACACGATCGGAGACGAATCTGCAACCAAGCAC TGAAGAAGACTTCGCGACGAACAGTCGTCACGGAATGGGAATTAGCTGGA ACAATTCGTCATCTGTTGCCAGAGAAATCTCTTGCTCTGTCAACAAGGCC CTTGTACCCATGACCAGTATCCCCATAACGCCCGATCCGCGCCCTCCACC GCGCAGACGCCGCGCGAAAAGCCGGGGTGCACGTCATTTCCTCGGCCAAA GTCGCCTCCTTCTCTTGCCGAACCAGCCACGAACGGGGGAGTGCCGAAGA TAGCGCGCTCCAAGACACCGCCGGCGTCGCCTACGGAGCAGAAGCACAGC CACGATTTGACCTCATAGTGTCCACGGCGACGCCGCTCTCGAACACTGTC CTGGATCTCCTAGGGGCGGCGGAAGTGACGTACGAAGCAACGATGGAGAC GGGGGAGACGGGAACAGGGAACAGAAGAGGGAAGCGTATTTACGCGATTT CGTGCGACTACGTCCTTCAGGCGACCGGGGCGGCGAGAGGAGGTCACGTG TGGGCCAAACAACTAGGCCACGCCGTTTCCCCGGCGGTTCCGAGCTTGTT TACTCTGACGGTGAAAGATCCAAGGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9600:6735..7612+

>mRNA_A-nodosum_M_contig9600.5.2 ID=mRNA_A-nodosum_M_contig9600.5.2|Name=mRNA_A-nodosum_M_contig9600.5.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at A-nodosum_M_contig9600:6735..7612+ (Ascophyllum nodosum dioecious)
CTGATCGCGCAGGGGTGCCCGAGGGGAAGCAAACAGTTGATTGGACCCTT
CAGTTCCCTATTTGGTCCTGCAGACGCCGCCGCTTGGTTCCGCGAAAGAG
GGGTGGCGCTCAAGACAGAGGGAGACGGTCGCATGTTTCCTCAATCGGAC
GACAGTCAGACGATCATCGATTGCTTGCAAGGGAAGCGTATTTACGCGAT
TTCGTGCGACTACGTCCTTCAGGCGACCGGGGCGGCGAGAGGAGGTCACG
TGTGGGCCAAACAACTAGGCCACGCCGTTTCCCCGGCGGTTCCGAGCTTG
TTTACTCTGACGGTGAAAGATCCAAGGTGA
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