mRNA_A-nodosum_M_contig9593.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9593.3.1
Unique NamemRNA_A-nodosum_M_contig9593.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: D8LL63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL63_ECTSI)

HSP 1 Score: 374 bits (959), Expect = 1.700e-120
Identity = 188/253 (74.31%), Postives = 209/253 (82.61%), Query Frame = 1
Query:    7 KDVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNAVSKYSSVNGKTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGE------AGEPAA--IFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISS 741
            KDV AVVSCTAAIV+PKEGDGPDRAKYFQGITFYEPEVADVPKETEFEG+ NLV A S+YS + GKTLF C PSFQ+GWR+WGALDDVV   + SES L +VP AGE      +G PAA  +FSGEVKTSNSGGFVSIRTRN SP LDLS Y+A+ LRVKGDGNRYKFSIYDS GWNS AWC  FDT  G W+DV +PF TL YNFRT+++KDPPPF PN+I SFQLMLSKFELDG LNP+FS G F L+I+S
Sbjct:   43 KDVAAVVSCTAAIVRPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGIYNLVEAASRYSDMKGKTLFACLPSFQEGWRQWGALDDVVMGGV-SESGLGVVPGAGETDVSSSSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSEYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWIDVDIPFTTLKYNFRTESIKDPPPFSPNSINSFQLMLSKFELDGKLNPNFSAGPFELTIAS 294          
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: A0A6H5KMW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW5_9PHAE)

HSP 1 Score: 374 bits (959), Expect = 5.050e-118
Identity = 188/253 (74.31%), Postives = 208/253 (82.21%), Query Frame = 1
Query:    7 KDVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNAVSKYSSVNGKTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGE------AGEPAA--IFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISS 741
            KDV AVVSCTAAIV+PKEGDGPDRAKYF GITFYEPEVADVPKETEFEG+ NLV A S+YS + GKTLF C PSFQ+ WR+WGALDDVV   + SES LR+VP AGE      +G PAA  +FSGEVKTSNSGGFVSIRTRN SP LDLSAY+A+ LRVKGDGNRYKFSIYDS GWNS AWC  FDT  G WMDV +PF TL YNFRT+++KDPPPF P++I SFQLMLSKFELDG LNP+FS G F L+ SS
Sbjct:  226 KDVAAVVSCTAAIVRPKEGDGPDRAKYFNGITFYEPEVADVPKETEFEGICNLVEAASRYSDIKGKTLFACLPSFQEEWRQWGALDDVVMGGV-SESGLRVVPGAGETDAKSSSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFSTLKYNFRTESVKDPPPFSPDSIHSFQLMLSKFELDGKLNPNFSAGPFELTTSS 477          
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: A0A0G4FWF9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FWF9_VITBC)

HSP 1 Score: 264 bits (675), Expect = 8.570e-78
Identity = 136/255 (53.33%), Postives = 170/255 (66.67%), Query Frame = 1
Query:    7 KDVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNAVSKYSSVNGKTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGE---AGEPAAIFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPP-FKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISSPSRLYP 759
            +DV AV+ C+AAIV P+EGD PDR KY+QGI F+EP V D P+E +F G++N+V A  +++S++   LF  QP F D W  WG LDDVV   + SES+++L P A E       AA+FSGEVKT+N GGFVS+RTR   P LDLSAYE + LR+KGDG+RYK  I D+ GW+S +W   FDT    W+ V +PF     NFR    KDP    K N I+S QLMLSKFE DG LNPSF+PGKF L + S    YP
Sbjct:   99 RDVVAVIICSAAIVTPREGDTPDREKYYQGIKFFEPMVVDSPEEVDFRGVQNVVEAAQRFASLDTLKLFSAQPGFHDTWEAWGPLDDVVMGGV-SESNIKLEPGAAEPNTGATVAAVFSGEVKTANFGGFVSVRTRKFDPPLDLSAYEGLRLRIKGDGSRYKMQIRDNAGWDSPSWGMGFDTVKDEWVTVDLPFSDFVQNFRNMKTKDPSAKLKTNEIYSLQLMLSKFEFDGELNPSFTPGKFRLVVQS-MEAYP 351          
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: A0A7S2UWN3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWN3_9STRA)

HSP 1 Score: 259 bits (662), Expect = 5.070e-76
Identity = 127/250 (50.80%), Postives = 169/250 (67.60%), Query Frame = 1
Query:    1 ICKDVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNAVSKYSSVNGKTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGE---AGEPAAIFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISS 741
            I + V A V C AAIV+P+EGDGPDRAKYFQGI FYEPE+ D P + +F+G  N+V  + K+ SV GK L+G  P  Q+ WR++G+LDDVV   + S+SSL +VP AGE       AA+FSGEV T N+GGF S+RTRN+ P LDLS+++ I +R+KGDGNRYK  + D   W+  +WC  FDT  G WMDV +PF+      R+ ++   P  +   I++FQ+ LSKFE DG LNP+F+ G F L + S
Sbjct:   99 IFRGVQAAVLCHAAIVKPQEGDGPDRAKYFQGIQFYEPEMVDKPMDIDFKGTCNIVEGLKKFGSVEGKVLYGSSPGLQNSWRQFGSLDDVVMGGI-SKSSLSVVPGAGEEATGSRIAAVFSGEVSTDNNGGFASVRTRNLDPPLDLSSFDGIEMRLKGDGNRYKLMLRDETRWDGISWCYSFDTEAGKWMDVRIPFKDFIPTLRSNSISGGPQLRTTEIYAFQITLSKFEYDGSLNPNFTAGSFSLVLDS 347          
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: A0A6H1TX18_9CYAN (NAD(P)H-binding protein n=2 Tax=Oxynema TaxID=1492710 RepID=A0A6H1TX18_9CYAN)

HSP 1 Score: 243 bits (619), Expect = 8.730e-70
Identity = 129/263 (49.05%), Postives = 169/263 (64.26%), Query Frame = 1
Query:   10 DVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNA----VSKYSSVNGKTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGEAGEPAAIFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISSPSRLYPLWGKSNRPR 786
            DV+ V+ C+   VQPKEGD P+R KY+QGI FY PEV DVP+  E++G+R+LV+A    ++++ + + K LF  +   QD    WG LDD+V   + SES++R+V       E  A+F+G V TSNSGGFVSIRTRN  P LDLSAY+ I LRVKGDG RYKF + +   W+S ++C  FDT   +W  V +PF  L   FR KT+ + PPF P  I+S QLMLSKFE DG LNP F PG F L + S S     +G   +P+
Sbjct:  116 DVSTVICCSGTKVQPKEGDTPNREKYYQGIKFYMPEVIDVPELVEYKGIRHLVDATRRQLNQWGNSSNKMLFDFRKVTQDLKETWGVLDDIVMGGV-SESNVRIV-------ENTALFTGNVSTSNSGGFVSIRTRNFDPPLDLSAYQGIDLRVKGDGKRYKFILRNESQWDSRSYCYSFDTVSNIWFTVRIPFSDLIPVFRAKTVNNAPPFDPKTIYSIQLMLSKFEYDGELNPKFEPGFFQLQVESIS----AYGAQEKPQ 366          
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: A0A0M1JR52_9CYAN (NADH:ubiquinone oxidoreductase n=3 Tax=Planktothricoides TaxID=132607 RepID=A0A0M1JR52_9CYAN)

HSP 1 Score: 240 bits (613), Expect = 4.720e-69
Identity = 127/247 (51.42%), Postives = 157/247 (63.56%), Query Frame = 1
Query:    1 ICKDVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNAVSKYSSVNGKTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGEAGEPAAIFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISS 741
            + KD+ AV+ CT   VQPKEGD P+R KY+QGI FY PEV DVP+  E++G++NLV AV   +      +F      +D    WGALDD+V   + SES +RL       G  AAIFSG V T+NSGGF S+R+RN  P LDLS Y  I LRVKGDGNRYKF + +   W+S  +C  FDT P +   V +PF  L   FR KT+KD  PF+P  I SFQLMLSKFE DG LNP F+PG F + + S
Sbjct:  107 VTKDIQAVICCTGTRVQPKEGDTPNREKYYQGIKFYMPEVVDVPEIVEYQGMKNLVQAV--VNQAKEPVIFDFSQPTKDIQETWGALDDIVMGGV-SESGIRL-------GNEAAIFSGNVSTANSGGFASVRSRNFEPILDLSNYTGIDLRVKGDGNRYKFILRNETKWDSICYCYSFDTVPNIEFTVRIPFAELIPVFRAKTLKDATPFEPGQITSFQLMLSKFEYDGNLNPKFTPGLFQIQVKS 343          
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: U7QG86_9CYAN (Short chain dehydrogenase family protein n=2 Tax=Lyngbya TaxID=28073 RepID=U7QG86_9CYAN)

HSP 1 Score: 240 bits (613), Expect = 5.780e-69
Identity = 124/248 (50.00%), Postives = 162/248 (65.32%), Query Frame = 1
Query:    1 ICKDVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNAVSKYSSVNG-KTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGEAGEPAAIFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISS 741
            + KDVTA++ CT   VQP EGD P R KY+QGI FY PEV DVP++ E+EG++NL+NA   Y   +G K +F      +D    WGALDDVV   + SESS+RL+       E  A+F+G V T+NSGGF S+RTRN  P L+LS Y+ I +R+KGDG RYKF + +   W+S A+C  FDT   + + + +PF+ L   FR KT+KD  PF P+ ++S QLMLSKFE D  LNP FSPG F L I +
Sbjct:  110 VMKDVTAIICCTGTKVQPVEGDTPTREKYYQGIKFYMPEVVDVPEKVEYEGMQNLINAAFPYLKNSGEKLIFDFSKPTEDLKETWGALDDVVMGGV-SESSIRLI-------ENTALFTGNVSTANSGGFASVRTRNFDPPLNLSGYQGIEMRIKGDGKRYKFILRNDPKWDSIAYCYSFDTVYNIPVTIRIPFDQLIPVFRAKTVKDGDPFDPSTVYSIQLMLSKFEYDKALNPKFSPGNFQLQIET 349          
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: F4XR29_9CYAN (Complex I intermediate-associated protein, NmrA-like family n=24 Tax=Moorena TaxID=1155738 RepID=F4XR29_9CYAN)

HSP 1 Score: 240 bits (612), Expect = 7.880e-69
Identity = 122/245 (49.80%), Postives = 163/245 (66.53%), Query Frame = 1
Query:    7 KDVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNAVSKYSSVNGKTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGEAGEPAAIFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISS 741
            K++TA+V CT A +QP EGD P+R KY QGI FY PEV D P+  E++G++NLV A ++Y     + LF  Q    D    WGA+DDVV   + SESS+RL+       + AA+F+G V T+NSGGFVS+RTRN+   L+L+ Y+ + LRVKGDG RYKF + +   W+  A+C  FDT    W++VS+PF  L   FR KT+KD  PF P+ IF+ QLMLSKFE DG LNP+F+PG F L + +
Sbjct:  115 KNITAIVCCTGARMQPVEGDTPNREKYDQGIKFYRPEVVDSPELLEYQGIKNLVQAAAEYLEPGKQLLFDFQNPSDDLQETWGAVDDVVMGGV-SESSIRLI-------DKAALFTGNVSTANSGGFVSVRTRNLPTPLNLAEYQGLELRVKGDGQRYKFILRNESKWDGIAYCYSFDTQKDQWINVSIPFADLIPVFRAKTLKDAAPFNPSRIFAIQLMLSKFEYDGALNPNFAPGSFVLQLET 351          
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: UPI0019E780EC (CIA30 family protein n=1 Tax=Oscillatoriaceae cyanobacterium M7585_C2015_266 TaxID=2774341 RepID=UPI0019E780EC)

HSP 1 Score: 239 bits (611), Expect = 1.250e-68
Identity = 140/303 (46.20%), Postives = 172/303 (56.77%), Query Frame = 1
Query:    1 ICKDVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNAVS----KYSSVNGKTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGEAGEPAAIFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISS----PSRLYPLW--------GKSNRPRGSFT*VLPA*RDLAGRASTLTWSLQ 861
            I  DVTAV+ C    VQP EGD P R KY+QGI FY PEV DVP+  E++G++NL+           +   K +F      QD    WGALDDVV   + SESS+RL+         AA FSG V T+NSGGF SIRTRN  P LDLS Y  I LRVKGDG RYKF   +   W+S A+C  FDT   +W++V +PF+ L   FR KT+K+  PF P+NI+SFQLMLSKFE DG  NP F PG F L I S      ++ P W         ++ RP  +     PA R        LTW L+
Sbjct:  114 ITNDVTAVICCIGTRVQPIEGDTPTREKYYQGIKFYMPEVVDVPEIVEYKGIQNLLQVTRPQLLSLGTPGEKIIFDFTKPSQDLKEIWGALDDVVMGGV-SESSIRLI-------NGAAFFSGNVSTANSGGFASIRTRNFDPPLDLSDYSGIDLRVKGDGKRYKFIARNDAKWDSIAYCYSFDTVYNIWVNVRIPFDALIPVFRAKTLKNRAPFDPSNIYSFQLMLSKFEYDGAFNPKFEPGIFQLQIESIKAYGGKILPQWIHVSSAGVTRAGRPDLNLDEEPPAVRLNDQLGGILTWKLK 408          
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: A0A350Y1I2_9CYAN (NADH:ubiquinone oxidoreductase n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A350Y1I2_9CYAN)

HSP 1 Score: 238 bits (608), Expect = 3.020e-68
Identity = 122/245 (49.80%), Postives = 160/245 (65.31%), Query Frame = 1
Query:    7 KDVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNAVSKYSSVNGKTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGEAGEPAAIFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISS 741
            KD++AVV CT   VQP EGD P R KY+QGI FY PEV D P+  +++G++NLV A +K      + LF  +    D    WGA+DDVV   + SESS+RL+       + AA+FSG V T+NSGGFVS+RTRN +P L+LS YE + LRVKGDG RYKF +     W+  ++C  FDT    W+DV +PF+ L   FR KT+KD P F  + +++ QLMLSKFE DGGLNP+F PG F L + +
Sbjct:  115 KDISAVVCCTGVRVQPVEGDTPTREKYYQGIKFYMPEVVDSPEIVDYQGIKNLVQAAAKNLEPGKQLLFDFKNPTDDLKETWGAVDDVVMGGV-SESSIRLI-------DQAALFSGIVSTANSGGFVSVRTRNFNPPLNLSEYEGVELRVKGDGQRYKFILRSESKWDGISYCYSFDTQKDSWVDVRIPFQALIPVFRAKTLKDVPAFDSSQVYALQLMLSKFEYDGGLNPNFQPGGFALQVET 351          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL63_ECTSI1.700e-12074.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMW5_9PHAE5.050e-11874.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4FWF9_VITBC8.570e-7853.33Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S2UWN3_9STRA5.070e-7650.80Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H1TX18_9CYAN8.730e-7049.05NAD(P)H-binding protein n=2 Tax=Oxynema TaxID=1492... [more]
A0A0M1JR52_9CYAN4.720e-6951.42NADH:ubiquinone oxidoreductase n=3 Tax=Planktothri... [more]
U7QG86_9CYAN5.780e-6950.00Short chain dehydrogenase family protein n=2 Tax=L... [more]
F4XR29_9CYAN7.880e-6949.80Complex I intermediate-associated protein, NmrA-li... [more]
UPI0019E780EC1.250e-6846.20CIA30 family protein n=1 Tax=Oscillatoriaceae cyan... [more]
A0A350Y1I2_9CYAN3.020e-6849.80NADH:ubiquinone oxidoreductase n=2 Tax=unclassifie... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9593contigA-nodosum_M_contig9593:13354..19031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LL63
PFAMsCIA30,NAD_binding_10
Model size1759
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons9
Evalue1.46e-66
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota
Descriptiondivinyl chlorophyllide a 8-vinyl-reductase activity
Cds size444
COG categoryGM
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9593.3.1prot_A-nodosum_M_contig9593.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9593 16572..18478 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870465.6267116-UTR-A-nodosum_M_contig9593:13353..139351680870465.6267116-UTR-A-nodosum_M_contig9593:13353..13935Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9593 13354..13935 -
1680870465.7191143-UTR-A-nodosum_M_contig9593:14759..148971680870465.7191143-UTR-A-nodosum_M_contig9593:14759..14897Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9593 14760..14897 -
1680870465.7314296-UTR-A-nodosum_M_contig9593:15419..155951680870465.7314296-UTR-A-nodosum_M_contig9593:15419..15595Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9593 15420..15595 -
1680870465.7439172-UTR-A-nodosum_M_contig9593:16075..161891680870465.7439172-UTR-A-nodosum_M_contig9593:16075..16189Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9593 16076..16189 -
1680870465.756295-UTR-A-nodosum_M_contig9593:16548..165711680870465.756295-UTR-A-nodosum_M_contig9593:16548..16571Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9593 16549..16571 -
1680870465.8230066-UTR-A-nodosum_M_contig9593:18478..186431680870465.8230066-UTR-A-nodosum_M_contig9593:18478..18643Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9593 18479..18643 -
1680870465.8343718-UTR-A-nodosum_M_contig9593:18914..190311680870465.8343718-UTR-A-nodosum_M_contig9593:18914..19031Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9593 18915..19031 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870465.7684288-CDS-A-nodosum_M_contig9593:16571..167071680870465.7684288-CDS-A-nodosum_M_contig9593:16571..16707Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9593 16572..16707 -
1680870465.7799783-CDS-A-nodosum_M_contig9593:17226..173251680870465.7799783-CDS-A-nodosum_M_contig9593:17226..17325Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9593 17227..17325 -
1680870465.7968447-CDS-A-nodosum_M_contig9593:17913..181141680870465.7968447-CDS-A-nodosum_M_contig9593:17913..18114Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9593 17914..18114 -
1680870465.8113534-CDS-A-nodosum_M_contig9593:18470..184781680870465.8113534-CDS-A-nodosum_M_contig9593:18470..18478Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9593 18471..18478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9593.3.1

>prot_A-nodosum_M_contig9593.3.1 ID=prot_A-nodosum_M_contig9593.3.1|Name=mRNA_A-nodosum_M_contig9593.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=148bp
MESESSLRLVPEAGEAGEPAAIFSGEVKTSNSGGFVSIRTRNMSPSLDLS
AYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFE
TLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*
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mRNA from alignment at A-nodosum_M_contig9593:13354..19031-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9593.3.1 ID=mRNA_A-nodosum_M_contig9593.3.1|Name=mRNA_A-nodosum_M_contig9593.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5678bp|location=Sequence derived from alignment at A-nodosum_M_contig9593:13354..19031- (Ascophyllum nodosum dioecious)
ATCTGTAAGGACGTGACTGCGGTGGTGTCGTGCACGGCAGCCATCGTACA ACCAAAAGAAGGAGACGGTCCAGACAGGGCCAAGTATTTCCAGGGCATCA CTTTCTACGAACCCGAGGTGCCTACACGCTTAATACCATTTCACCTTATG TACCTAACATTACATTATCATATTCTTGTCCTACCCTCTTGTCCCTAACG TCGCCCACTCCTATGCGATGTACGTACGATCAGTAGTATCGAGGTAATGT GTTGCCATGAACGAAGTAATTCCTATTTAAAAAGTCAAAGAAGTCATGCA AAAGCGTGCGAGGGAGGTTCAACGCAAACCCCTTTGCCGACCCTGTATGG TACTGCACCGTACTAAAAATGGTATTGCTACGGAAAAGGTGGCGGACGTG CCGAAAGAGACGGAGTTTGAGGGCCTTCGAAACTTGGTTAATGCCGTTAG CAAATACTCGAGCGTGAACGGGAAGACGCTGTTTGGGTGTCAACCCTCGT TCCAAGACGGGTGGCGAAAGTGGGGAGCGCTCGATGATGTGGTGAGAAAA GTCATGGAAAGGTCACGAGAGGAAGTGAAAGGCCCAGTCAGAACCTTGTA GATAGATCTTGGTGACACTACGTAAGGCGATGATAGTGTATATAGTTAAA TTGGTGTTGTCAATAAATCTCGGAACTGTAGTGAACTAAACACCGAAACG AAGTGATAGAGAAAGTCGATAGGAGTATCAGTACTACCAATAGCGTTCTA GAAAAGAACCCGAATCCAAGCCGAGCCTTCTAGGCTTGGCTCTCGTTATT ATACACCACTGGCCTGTTTTCGATGATAATCACGCCGGGCCTATTTATTA ATTCAGAGACATGATGCACAGTTTACTGTCGTATCATAAAATCCCCATCA GGTGATGGGGGCGTCAGCGAGAGCTCTCTTCGCCTTGTACCTGAGGCAGG AGAGGCTGGAGAACCAGCAGCTATCTTTAGTGGAGAGGTAAAGACGTCCA ATTCTGGCGGGTTCGTGTCCATCCGCACGAGAAACATGTCACCTTCGTTG GACTTGTCGGCATACGAGGCGATCACACTCAGGGTCAAGGGGGACGGGAA TCGGTATAAGTTCAGCATGTGAGGAGCGTGTTGTGTGTGCCAGCGTTGGG AACAGTCACGGCTTGAGCGACCTGCTGCAGATTACTCGTCCCGCGCTTCT AAACCCCTCTTGTGATTTCAGGGCATACATGGTAGACATTTCAAAATCAT AGCGTCGAGAGAACAGGACACAAGGGGGGAGGTGTTGGAGGTATTGGAAG GGTTAGGGCAAAATACTTTGATTCCGAACAGCGGGAACTGCCGTTCACTA TTAATAGTGTTAAGATCGGAAGGTAAAGGCACATTTAGGTTCCCCTTAAT TCACGAGAGAGCCATCCACGTTGGGTTCTAGTTCAATGGTCAACCCTAAG ATCAAGGGATGCTCCAGAGATTGGGGCGCATCCTCTTCAAGACTGGGATG CGAAGATCATTGATATTCTTGAAAGCATTAACCGTGCTGCCGTGCAAATG ATTGCGGCTGTTTTGTTTTCCTAGTCCTTCGACATAAGTTGTGCCAATTA CTCTACGTACATCATCTATTACTGTACTTCGGCGTGATGTTAAGTGAGGA ATGGTCGTGTTCTGTGGGTGTTTTGTGGGTGTTCTATGGTGTTGTGTGCG ATTCAGCTACGATTCTGGCGGATGGAATAGCGCGGCGTGGTGCGGCATGT TCGACACAACACCGGGGGTGTGGATGGACGTCAGTGTCCCCTTTGAAACC CTCAGGTGTGTGTACTGTTGTAAGTTGAATACATCCCTCTAACCACGCCT CACCCGCAAACGTACCCTAACACGTACACTTACCGCCCTTATTATGTTTT CATCTTAACAGACGAGGCGAATGCAAGTGGATGATGCGGTGTTGTATGTA GTATTGTACACAAGCCACGCCCGCGTGCCGCCTGATTATTTATGACTTTT GTTGTATTTAGGCGTCCTTAAGTTTCGTCCAACCGTTGGTACTCTTTAAA TTTAATCACTGTTGGCGACGACGTCCCTTAGGTCTAGATCAGAGGGTTAA TTTGCCCAGGCGCTCATTTTTGTAACCGAAAAGTAAGAGCGTACAGCAAG TTACGATGTTCTATTTCTACAAGTGGTGTCACTTCTTGTCCTTTTGCATA TGGTGTCAATACCATTTGACTGTACCAGATACAGCACATCGAGAGCAGTG TCATGTTACTCGTGCTAATGTAGAATATCGTTAACACACAAAACACTTTC GTGGCGCAATATCATTTCTTACAGTTACAACTTTCGAACCAAAACAATGA AAGATCCGCCACCGTTCAAGCCAAACAACATCTTCTCTTTCCAGCTCATG CTTTCCAAGTTCGAGCTTGATGGTGGCCTCAACCCGAGCTTCTCTCCAGG GAAATTTTAGCTATCCATTTCTTCCCCATCAAGGTAACAACCGTAGCTCT TGCACTGTAGTTGGGACTGTTGAACTCGTACTCGGTACTCTCATAGTGTA GCTCTACAGTATAGCAGCGGGTCGGAACGACGATACAGGAATGCAGTACA AGTTTAATTTCGGGGGGTAGTATATTACTTCAAATAATACGTAGATCTAT TACCCAAGGTCGAAAAATCCAGGGCATTGATTCCACTGAAGTCTGTTTGA TTTAAGCTTGTGGCAAGTCGTAAATAGGATGGGAATCAAGTACTTAAAAA AAGCCTGGCAAGCAAAACGTACCTGCTTCAACAAATGGCACATATGCTTA CCTTTCACCGTGTCATGTTTCGTTCTACTTTGTTTAAAAAAGGCTGTATC CGTTGTGGGGAAAGAGCAACAGACCTCGCGGTTCATTCACATAAGTTCTG CCGGCGTGACGAGACCTGGCAGGCCGGGCCTCAACGTTGACGTGGAGCCT CCAGCGGTGAGACGGTGGCAAAATACCCGTCCTCCCTCCACTGCACAAGT TATTTTACTTCATTTTACTGTACTCCATCGCCTTCCATTCAAAAACGGAA TCTGGCTCCTTACTGTAGATCCAGAATGCGTCTGTTTTGGATCTTCTTGT ACTTTCACCTACTAAGCCGTTCGAAATCCTCCGTCAAGGCTGTGGTTCCA TTTCGGATTTCCTTTCTATTTTTATATGTAGCCAGCCAGTAATATTACTT CACCTGCCCCGCTATCGCCACATATTTTTCGGGCATGTCTGGTGACAGTA GCTCTACCGTACATTGCAGTAAAACCTACAGGTGAGAGCTTACAGCGTCC TACTAATGTTGGAGTGAAGGTCCAACTCGTGTGCGGTTTAGATACTTTGA AGCATGATATGGACATTATAGCTTGTGGTACGTGGAATGTTCCTTACAAG TTGAGCGTACCGAGCCGATCTGATGTTCTGTCGCAGGTACGCATGAATGA CATGCTCTCGTATTTGCTCACATACAAGCTGAAAGGGGAAGACGTTGTGC GCGACAGCGGCATTCCGGCAACCATCGTACGCCCTTGTGCTCTAACGGAA GAACCTGGAGGGGCGCCGATGATCGTGTCTCAGGGGGATAACATAAAGGG GACAATCAGCAGGTAAGTACTAGTAATACTGTTTTTATTATTAATAGTGG CTTGACACGTATCGGTAGGGCACGCGAAGCGGTTGGACGGTGTGTGCTTT CAATAGGTGAGTGTTGCGTATTTGATCTTGGGACTTCAATAGGGTGAGTA GTGCGTGGTTGTTGTTCGGAGAAGGCGCACAAAAGGTGATCGTCGATGAG TGTTCTGGGCGTAAACTTCGATGGTCAGAACAATCAAAAGACAGCAAAGG ATATGCTGACACGCGGGCATACGTGCCGTATGTTTCCATTATTTTCAGAG AGTCGAGCTTGAAACATCTTCAGCAGCTCCATGGCATTATATGTATACTC TATCCTGTGTAATAAAATTATTAAAGAAGACTCAGCGTACCGGTTTAACA CATCTTGGTGAAGGCAGACGACCCCAAACTGAAACACGAATACACTAGTG TTATCCTTCGGTACTCAAATGAGTAGTGTGTGTGTTTTCAGAGATCCTCA GACCAGAACAGCAGGTGACGGTCGTACTATGCAGGGATGACGTAGCCGAG CTGGCCGTCGAGGCGCTTCTAAATCCCGTTGCTAGCGGGCTAACGTTCGA AGTCAAGTCGGACATACCGTTCAGCACCATATGGAAAGCAGAAAGTGTGG GAGATCAACCCCGAAATTATGGGTAAGAGTTGTACTTATCGCGTCGCCCA CTGATTTCGAGACCCTAGACACCCCACAGAGGCTAGAGCTCTATCGCGAA TTTAAGTTGAACAACTGTTCGTGGGTTAACGTGTTGTACCCGTTTCTTTC CAAATTACAGTCGATCATAATTTAGTGTTTCGACCCAAGTCGCTCGAGCA GGAACAAAAAAAAAGTGTTACTCTTTGTGTGTGATGCTCTTACTTGGAGA GATCGGCCTAGTCTAAAGCTCTATAGTGTGTGGTAGCCGAGGATCTCTCT GGATGATTAGAATTTTATGATGCCTGCACCATACTACATGTATCAGAAAA TAAAGTCGAAAACCCACTCAAATGCTTGAGTTGTTTTCTAGTTGTAGTCC TGCATTCTTCTGTCTAGAAAGTGTCTCTCTCTCTGTTGCGCGAGTGCGTG TATGATCATCGTCTATGCTTTTTGTTTGTCTTCTGTGCCTTTCTGCGCCG CATTTTTTTTTCTACATATTTCCGCTTTATCGTTTGATTTACGTTTTTGT TCGTCTCGTCTTTTTCTGTCTTTTGATAGCTGACAACGCACGGGAATGGT TACCGCTACTCGGTGTGGCTGAGGCCAAATGAGTTGATGTGAAAACAAAC ATCATATATAAACACCATTGGCCTTATGGCAAGCAAGACGATGTTAGCCT TCATCTGGCAAGGTACACCACTTTTGCGGTACTATGAAGGATTAGTTTTG TGCATTCGTCTTTTCTTTTGTACCCCATCTTCAATCTTCCTCCACGGACG GTCCGGCACTCCTCTCCTCTCTAACTGCCTTACAAATACCTCATAGGGAG CTCCTCAGTCCGCTGCGCAAGAGCCTGACGGGGAAAGAATGGATGGGTGA CATGTCGCCGGAAGAAGCAGCCGGAGTAACAGTCACAGCAACTATGACGA AGGAGCAATAGATGGGCTAAAACCTACTAAGGATCGTACGAAACTCCTCC CTCGCACTAGGATCGCTCCAGGTCACAAACGTCCAGAGGGTGTGTGAATT TGTCTATCTTTAGTTAGTGTGGAGATACGATGTGCCATAGCTGCGCATGT GGTGCATCTAGCGTCGGAAGTCGGTGGCGGCGCTGCGTTTTTGGTTCCCC GTACTATATCTCGTTGATTACAACGGCGCCGTAGGGCACTTCCATGAATG TAGATTGTAACTGCTCTCGAGTAGCTGCTTTCGGGTACAGTGAAGGCTTG AGGCAAGGCATGGCACGAAGAGCAGCCCGTCAATCGGAAACTATCGTTTC TTCTCAATCCTGAAAACGTCACTTTCCATTTTCTGCGATAGTCCATTGTA GCGCGTCTGAAACATGGGGTTATCACGAACGAAAATGGAAGTTGGTCCTG TACTTGATGAGTAATATCGCGGATGGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9593:13354..19031-

>mRNA_A-nodosum_M_contig9593.3.1 ID=mRNA_A-nodosum_M_contig9593.3.1|Name=mRNA_A-nodosum_M_contig9593.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at A-nodosum_M_contig9593:13354..19031- (Ascophyllum nodosum dioecious)
ATGGAAAGCGAGAGCTCTCTTCGCCTTGTACCTGAGGCAGGAGAGGCTGG
AGAACCAGCAGCTATCTTTAGTGGAGAGGTAAAGACGTCCAATTCTGGCG
GGTTCGTGTCCATCCGCACGAGAAACATGTCACCTTCGTTGGACTTGTCG
GCATACGAGGCGATCACACTCAGGGTCAAGGGGGACGGGAATCGGTATAA
GTTCAGCATCTACGATTCTGGCGGATGGAATAGCGCGGCGTGGTGCGGCA
TGTTCGACACAACACCGGGGGTGTGGATGGACGTCAGTGTCCCCTTTGAA
ACCCTCAGTTACAACTTTCGAACCAAAACAATGAAAGATCCGCCACCGTT
CAAGCCAAACAACATCTTCTCTTTCCAGCTCATGCTTTCCAAGTTCGAGC
TTGATGGTGGCCTCAACCCGAGCTTCTCTCCAGGGAAATTTTAG
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