mRNA_A-nodosum_M_contig9593.3.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: D8LL63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL63_ECTSI) HSP 1 Score: 374 bits (959), Expect = 1.700e-120 Identity = 188/253 (74.31%), Postives = 209/253 (82.61%), Query Frame = 1
Query: 7 KDVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNAVSKYSSVNGKTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGE------AGEPAA--IFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISS 741
KDV AVVSCTAAIV+PKEGDGPDRAKYFQGITFYEPEVADVPKETEFEG+ NLV A S+YS + GKTLF C PSFQ+GWR+WGALDDVV + SES L +VP AGE +G PAA +FSGEVKTSNSGGFVSIRTRN SP LDLS Y+A+ LRVKGDGNRYKFSIYDS GWNS AWC FDT G W+DV +PF TL YNFRT+++KDPPPF PN+I SFQLMLSKFELDG LNP+FS G F L+I+S
Sbjct: 43 KDVAAVVSCTAAIVRPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGIYNLVEAASRYSDMKGKTLFACLPSFQEGWRQWGALDDVVMGGV-SESGLGVVPGAGETDVSSSSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSEYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWIDVDIPFTTLKYNFRTESIKDPPPFSPNSINSFQLMLSKFELDGKLNPNFSAGPFELTIAS 294
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: A0A6H5KMW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW5_9PHAE) HSP 1 Score: 374 bits (959), Expect = 5.050e-118 Identity = 188/253 (74.31%), Postives = 208/253 (82.21%), Query Frame = 1
Query: 7 KDVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNAVSKYSSVNGKTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGE------AGEPAA--IFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISS 741
KDV AVVSCTAAIV+PKEGDGPDRAKYF GITFYEPEVADVPKETEFEG+ NLV A S+YS + GKTLF C PSFQ+ WR+WGALDDVV + SES LR+VP AGE +G PAA +FSGEVKTSNSGGFVSIRTRN SP LDLSAY+A+ LRVKGDGNRYKFSIYDS GWNS AWC FDT G WMDV +PF TL YNFRT+++KDPPPF P++I SFQLMLSKFELDG LNP+FS G F L+ SS
Sbjct: 226 KDVAAVVSCTAAIVRPKEGDGPDRAKYFNGITFYEPEVADVPKETEFEGICNLVEAASRYSDIKGKTLFACLPSFQEEWRQWGALDDVVMGGV-SESGLRVVPGAGETDAKSSSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFSTLKYNFRTESVKDPPPFSPDSIHSFQLMLSKFELDGKLNPNFSAGPFELTTSS 477
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: A0A0G4FWF9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FWF9_VITBC) HSP 1 Score: 264 bits (675), Expect = 8.570e-78 Identity = 136/255 (53.33%), Postives = 170/255 (66.67%), Query Frame = 1
Query: 7 KDVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNAVSKYSSVNGKTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGE---AGEPAAIFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPP-FKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISSPSRLYP 759
+DV AV+ C+AAIV P+EGD PDR KY+QGI F+EP V D P+E +F G++N+V A +++S++ LF QP F D W WG LDDVV + SES+++L P A E AA+FSGEVKT+N GGFVS+RTR P LDLSAYE + LR+KGDG+RYK I D+ GW+S +W FDT W+ V +PF NFR KDP K N I+S QLMLSKFE DG LNPSF+PGKF L + S YP
Sbjct: 99 RDVVAVIICSAAIVTPREGDTPDREKYYQGIKFFEPMVVDSPEEVDFRGVQNVVEAAQRFASLDTLKLFSAQPGFHDTWEAWGPLDDVVMGGV-SESNIKLEPGAAEPNTGATVAAVFSGEVKTANFGGFVSVRTRKFDPPLDLSAYEGLRLRIKGDGSRYKMQIRDNAGWDSPSWGMGFDTVKDEWVTVDLPFSDFVQNFRNMKTKDPSAKLKTNEIYSLQLMLSKFEFDGELNPSFTPGKFRLVVQS-MEAYP 351
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: A0A7S2UWN3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWN3_9STRA) HSP 1 Score: 259 bits (662), Expect = 5.070e-76 Identity = 127/250 (50.80%), Postives = 169/250 (67.60%), Query Frame = 1
Query: 1 ICKDVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNAVSKYSSVNGKTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGE---AGEPAAIFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISS 741
I + V A V C AAIV+P+EGDGPDRAKYFQGI FYEPE+ D P + +F+G N+V + K+ SV GK L+G P Q+ WR++G+LDDVV + S+SSL +VP AGE AA+FSGEV T N+GGF S+RTRN+ P LDLS+++ I +R+KGDGNRYK + D W+ +WC FDT G WMDV +PF+ R+ ++ P + I++FQ+ LSKFE DG LNP+F+ G F L + S
Sbjct: 99 IFRGVQAAVLCHAAIVKPQEGDGPDRAKYFQGIQFYEPEMVDKPMDIDFKGTCNIVEGLKKFGSVEGKVLYGSSPGLQNSWRQFGSLDDVVMGGI-SKSSLSVVPGAGEEATGSRIAAVFSGEVSTDNNGGFASVRTRNLDPPLDLSSFDGIEMRLKGDGNRYKLMLRDETRWDGISWCYSFDTEAGKWMDVRIPFKDFIPTLRSNSISGGPQLRTTEIYAFQITLSKFEYDGSLNPNFTAGSFSLVLDS 347
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: A0A6H1TX18_9CYAN (NAD(P)H-binding protein n=2 Tax=Oxynema TaxID=1492710 RepID=A0A6H1TX18_9CYAN) HSP 1 Score: 243 bits (619), Expect = 8.730e-70 Identity = 129/263 (49.05%), Postives = 169/263 (64.26%), Query Frame = 1
Query: 10 DVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNA----VSKYSSVNGKTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGEAGEPAAIFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISSPSRLYPLWGKSNRPR 786
DV+ V+ C+ VQPKEGD P+R KY+QGI FY PEV DVP+ E++G+R+LV+A ++++ + + K LF + QD WG LDD+V + SES++R+V E A+F+G V TSNSGGFVSIRTRN P LDLSAY+ I LRVKGDG RYKF + + W+S ++C FDT +W V +PF L FR KT+ + PPF P I+S QLMLSKFE DG LNP F PG F L + S S +G +P+
Sbjct: 116 DVSTVICCSGTKVQPKEGDTPNREKYYQGIKFYMPEVIDVPELVEYKGIRHLVDATRRQLNQWGNSSNKMLFDFRKVTQDLKETWGVLDDIVMGGV-SESNVRIV-------ENTALFTGNVSTSNSGGFVSIRTRNFDPPLDLSAYQGIDLRVKGDGKRYKFILRNESQWDSRSYCYSFDTVSNIWFTVRIPFSDLIPVFRAKTVNNAPPFDPKTIYSIQLMLSKFEYDGELNPKFEPGFFQLQVESIS----AYGAQEKPQ 366
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: A0A0M1JR52_9CYAN (NADH:ubiquinone oxidoreductase n=3 Tax=Planktothricoides TaxID=132607 RepID=A0A0M1JR52_9CYAN) HSP 1 Score: 240 bits (613), Expect = 4.720e-69 Identity = 127/247 (51.42%), Postives = 157/247 (63.56%), Query Frame = 1
Query: 1 ICKDVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNAVSKYSSVNGKTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGEAGEPAAIFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISS 741
+ KD+ AV+ CT VQPKEGD P+R KY+QGI FY PEV DVP+ E++G++NLV AV + +F +D WGALDD+V + SES +RL G AAIFSG V T+NSGGF S+R+RN P LDLS Y I LRVKGDGNRYKF + + W+S +C FDT P + V +PF L FR KT+KD PF+P I SFQLMLSKFE DG LNP F+PG F + + S
Sbjct: 107 VTKDIQAVICCTGTRVQPKEGDTPNREKYYQGIKFYMPEVVDVPEIVEYQGMKNLVQAV--VNQAKEPVIFDFSQPTKDIQETWGALDDIVMGGV-SESGIRL-------GNEAAIFSGNVSTANSGGFASVRSRNFEPILDLSNYTGIDLRVKGDGNRYKFILRNETKWDSICYCYSFDTVPNIEFTVRIPFAELIPVFRAKTLKDATPFEPGQITSFQLMLSKFEYDGNLNPKFTPGLFQIQVKS 343
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: U7QG86_9CYAN (Short chain dehydrogenase family protein n=2 Tax=Lyngbya TaxID=28073 RepID=U7QG86_9CYAN) HSP 1 Score: 240 bits (613), Expect = 5.780e-69 Identity = 124/248 (50.00%), Postives = 162/248 (65.32%), Query Frame = 1
Query: 1 ICKDVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNAVSKYSSVNG-KTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGEAGEPAAIFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISS 741
+ KDVTA++ CT VQP EGD P R KY+QGI FY PEV DVP++ E+EG++NL+NA Y +G K +F +D WGALDDVV + SESS+RL+ E A+F+G V T+NSGGF S+RTRN P L+LS Y+ I +R+KGDG RYKF + + W+S A+C FDT + + + +PF+ L FR KT+KD PF P+ ++S QLMLSKFE D LNP FSPG F L I +
Sbjct: 110 VMKDVTAIICCTGTKVQPVEGDTPTREKYYQGIKFYMPEVVDVPEKVEYEGMQNLINAAFPYLKNSGEKLIFDFSKPTEDLKETWGALDDVVMGGV-SESSIRLI-------ENTALFTGNVSTANSGGFASVRTRNFDPPLNLSGYQGIEMRIKGDGKRYKFILRNDPKWDSIAYCYSFDTVYNIPVTIRIPFDQLIPVFRAKTVKDGDPFDPSTVYSIQLMLSKFEYDKALNPKFSPGNFQLQIET 349
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: F4XR29_9CYAN (Complex I intermediate-associated protein, NmrA-like family n=24 Tax=Moorena TaxID=1155738 RepID=F4XR29_9CYAN) HSP 1 Score: 240 bits (612), Expect = 7.880e-69 Identity = 122/245 (49.80%), Postives = 163/245 (66.53%), Query Frame = 1
Query: 7 KDVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNAVSKYSSVNGKTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGEAGEPAAIFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISS 741
K++TA+V CT A +QP EGD P+R KY QGI FY PEV D P+ E++G++NLV A ++Y + LF Q D WGA+DDVV + SESS+RL+ + AA+F+G V T+NSGGFVS+RTRN+ L+L+ Y+ + LRVKGDG RYKF + + W+ A+C FDT W++VS+PF L FR KT+KD PF P+ IF+ QLMLSKFE DG LNP+F+PG F L + +
Sbjct: 115 KNITAIVCCTGARMQPVEGDTPNREKYDQGIKFYRPEVVDSPELLEYQGIKNLVQAAAEYLEPGKQLLFDFQNPSDDLQETWGAVDDVVMGGV-SESSIRLI-------DKAALFTGNVSTANSGGFVSVRTRNLPTPLNLAEYQGLELRVKGDGQRYKFILRNESKWDGIAYCYSFDTQKDQWINVSIPFADLIPVFRAKTLKDAAPFNPSRIFAIQLMLSKFEYDGALNPNFAPGSFVLQLET 351
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: UPI0019E780EC (CIA30 family protein n=1 Tax=Oscillatoriaceae cyanobacterium M7585_C2015_266 TaxID=2774341 RepID=UPI0019E780EC) HSP 1 Score: 239 bits (611), Expect = 1.250e-68 Identity = 140/303 (46.20%), Postives = 172/303 (56.77%), Query Frame = 1
Query: 1 ICKDVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNAVS----KYSSVNGKTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGEAGEPAAIFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISS----PSRLYPLW--------GKSNRPRGSFT*VLPA*RDLAGRASTLTWSLQ 861
I DVTAV+ C VQP EGD P R KY+QGI FY PEV DVP+ E++G++NL+ + K +F QD WGALDDVV + SESS+RL+ AA FSG V T+NSGGF SIRTRN P LDLS Y I LRVKGDG RYKF + W+S A+C FDT +W++V +PF+ L FR KT+K+ PF P+NI+SFQLMLSKFE DG NP F PG F L I S ++ P W ++ RP + PA R LTW L+
Sbjct: 114 ITNDVTAVICCIGTRVQPIEGDTPTREKYYQGIKFYMPEVVDVPEIVEYKGIQNLLQVTRPQLLSLGTPGEKIIFDFTKPSQDLKEIWGALDDVVMGGV-SESSIRLI-------NGAAFFSGNVSTANSGGFASIRTRNFDPPLDLSDYSGIDLRVKGDGKRYKFIARNDAKWDSIAYCYSFDTVYNIWVNVRIPFDALIPVFRAKTLKNRAPFDPSNIYSFQLMLSKFEYDGAFNPKFEPGIFQLQIESIKAYGGKILPQWIHVSSAGVTRAGRPDLNLDEEPPAVRLNDQLGGILTWKLK 408
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Match: A0A350Y1I2_9CYAN (NADH:ubiquinone oxidoreductase n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A350Y1I2_9CYAN) HSP 1 Score: 238 bits (608), Expect = 3.020e-68 Identity = 122/245 (49.80%), Postives = 160/245 (65.31%), Query Frame = 1
Query: 7 KDVTAVVSCTAAIVQPKEGDGPDRAKYFQGITFYEPEVADVPKETEFEGLRNLVNAVSKYSSVNGKTLFGCQPSFQDGWRKWGALDDVVRKVMESESSLRLVPEAGEAGEPAAIFSGEVKTSNSGGFVSIRTRNMSPSLDLSAYEAITLRVKGDGNRYKFSIYDSGGWNSAAWCGMFDTTPGVWMDVSVPFETLSYNFRTKTMKDPPPFKPNNIFSFQLMLSKFELDGGLNPSFSPGKF*LSISS 741
KD++AVV CT VQP EGD P R KY+QGI FY PEV D P+ +++G++NLV A +K + LF + D WGA+DDVV + SESS+RL+ + AA+FSG V T+NSGGFVS+RTRN +P L+LS YE + LRVKGDG RYKF + W+ ++C FDT W+DV +PF+ L FR KT+KD P F + +++ QLMLSKFE DGGLNP+F PG F L + +
Sbjct: 115 KDISAVVCCTGVRVQPVEGDTPTREKYYQGIKFYMPEVVDSPEIVDYQGIKNLVQAAAKNLEPGKQLLFDFKNPTDDLKETWGAVDDVVMGGV-SESSIRLI-------DQAALFSGIVSTANSGGFVSVRTRNFNPPLNLSEYEGVELRVKGDGQRYKFILRSESKWDGISYCYSFDTQKDSWVDVRIPFQALIPVFRAKTLKDVPAFDSSQVYALQLMLSKFEYDGGLNPNFQPGGFALQVET 351 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9593.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig9593.3.1 >prot_A-nodosum_M_contig9593.3.1 ID=prot_A-nodosum_M_contig9593.3.1|Name=mRNA_A-nodosum_M_contig9593.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=148bp MESESSLRLVPEAGEAGEPAAIFSGEVKTSNSGGFVSIRTRNMSPSLDLSback to top mRNA from alignment at A-nodosum_M_contig9593:13354..19031- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig9593.3.1 ID=mRNA_A-nodosum_M_contig9593.3.1|Name=mRNA_A-nodosum_M_contig9593.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5678bp|location=Sequence derived from alignment at A-nodosum_M_contig9593:13354..19031- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig9593:13354..19031- >mRNA_A-nodosum_M_contig9593.3.1 ID=mRNA_A-nodosum_M_contig9593.3.1|Name=mRNA_A-nodosum_M_contig9593.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at A-nodosum_M_contig9593:13354..19031- (Ascophyllum nodosum dioecious)back to top |