mRNA_A-nodosum_M_contig942.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig942.6.1
Unique NamemRNA_A-nodosum_M_contig942.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig942.6.1 vs. uniprot
Match: D8LGJ5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ5_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 4.710e-34
Identity = 103/228 (45.18%), Postives = 119/228 (52.19%), Query Frame = 3 
Query:    3 QVGLFRRVQADPSPERTVRDNSSLRFLHSVKLDASVLKRSTEEAKELEAHTAALEVADSVLDVRHAFFQARSSTATWLTRRALPETS*NIYPLVRRLMGISNVSSSSLVCISTHETSGIYLAIPL*SLLRS*LTPRQADIRETGTLTQLELSGAMRNVTGETPKQDETARILRTFGEEGAEGKDPNLIGLRGFEAAMARILRETHSLPLLPRVCDDLLFGPAVDTDKQ 686
            QV LFR VQAD S       +SSL FL+SVKLDA+VL       +ELEA TAALEVADSVLDVRHAFFQA                                                                    D+R +GTLT+ ELSGAMR V G TPK  ET+R+LR FG  GA+G DPN+I L GFEAAM   LRE+H+LP+LP+  DDLLFG A D + Q
Sbjct:  119 QVELFRLVQADASLA-----DSSLSFLYSVKLDATVLSLDRRATEELEAQTAALEVADSVLDVRHAFFQA--------------------------------------------------------------------DVRGSGTLTEHELSGAMRIVMGVTPKAAETSRVLRFFGAPGAQGNDPNVINLGGFEAAMVGRLRESHTLPVLPQRRDDLLFGSAGDKEGQ 273
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BLAST of mRNA_A-nodosum_M_contig942.6.1 vs. uniprot
Match: A0A6H5JAS8_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAS8_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.840e-32
Identity = 101/228 (44.30%), Postives = 116/228 (50.88%), Query Frame = 3 
Query:    3 QVGLFRRVQADPSPERTVRDNSSLRFLHSVKLDASVLKRSTEEAKELEAHTAALEVADSVLDVRHAFFQARSSTATWLTRRALPETS*NIYPLVRRLMGISNVSSSSLVCISTHETSGIYLAIPL*SLLRS*LTPRQADIRETGTLTQLELSGAMRNVTGETPKQDETARILRTFGEEGAEGKDPNLIGLRGFEAAMARILRETHSLPLLPRVCDDLLFGPAVDTDKQ 686
            QV LFR VQAD S       +SSL FL+SVKLD  VL      A+ELEA T ALEVADSVLDVRHAFFQA                                                                    D+R +GTLT+ ELSGAMR V G TPK  ET+R+LR FG  GA+G DPN+I L GFEAAM   LRE+H+LP+LP+  DDLLFG A   + Q
Sbjct:   65 QVELFRLVQADASLA-----DSSLSFLYSVKLDTRVLSLDQRAAEELEAQTVALEVADSVLDVRHAFFQA--------------------------------------------------------------------DVRGSGTLTEHELSGAMRIVMGVTPKAAETSRVLRFFGAPGAQGNDPNVINLGGFEAAMVGRLRESHTLPVLPQRRDDLLFGSAGGEEGQ 219
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig942.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGJ5_ECTSI4.710e-3445.18Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JAS8_9PHAE1.840e-3244.30EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig942contigA-nodosum_M_contig942:15524..19486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LGJ5
PFAMsIQ,LRR_4,LRR_8
Model size1897
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.57e-15
EggNOG OGsCOG4886@1|root,KOG0531@2759|Eukaryota
Descriptionaxoneme assembly
Cds size1431
COG categoryL
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig942.6.1prot_A-nodosum_M_contig942.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig942 16215..19486 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870436.90045-UTR-A-nodosum_M_contig942:15523..155811680870436.90045-UTR-A-nodosum_M_contig942:15523..15581Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig942 15524..15581 +
1680870436.9145887-UTR-A-nodosum_M_contig942:15808..162141680870436.9145887-UTR-A-nodosum_M_contig942:15808..16214Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig942 15809..16214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870436.930404-CDS-A-nodosum_M_contig942:16214..162961680870436.930404-CDS-A-nodosum_M_contig942:16214..16296Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig942 16215..16296 +
1680870437.0091658-CDS-A-nodosum_M_contig942:16559..166981680870437.0091658-CDS-A-nodosum_M_contig942:16559..16698Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig942 16560..16698 +
1680870437.0228472-CDS-A-nodosum_M_contig942:18088..187041680870437.0228472-CDS-A-nodosum_M_contig942:18088..18704Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig942 18089..18704 +
1680870437.0331068-CDS-A-nodosum_M_contig942:18892..194861680870437.0331068-CDS-A-nodosum_M_contig942:18892..19486Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig942 18893..19486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig942.6.1

>prot_A-nodosum_M_contig942.6.1 ID=prot_A-nodosum_M_contig942.6.1|Name=mRNA_A-nodosum_M_contig942.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=477bp
MRNVTGETPKQDETARILRTFGEEGAEGKDPNLIGLRGFEAAMARILRET
HSLPLLPRVCDDLLFGPAVDTDKQFNSFGDAFKNFHPASSPREKRSEGKH
NLDNGTDEKGHSPRDQHSSKTGERAVSWRRSPTKVSPRNSAERTRRKLGE
GASGAVAHNKVRTEPRLTDTNVVTVKGKGKGETTEGGPASCGVDGRRRDR
TTPHAQAGPSPWSLNEVGEEMSWASKIAAVIRESLKRAGDGRVLPNSANF
ERAQDETCPSTAQGIVSSPGRASRNETVPNLRSARSPRKKRPEGEHDLDN
GTDEREHFPRDQISSKIGESAVSCRRSPTKVSPQRISAERTRRNLRGGAS
GAVAHDKVRTEPRLTDTNMVTVKGKGNTTGAGSGSFGVDGRQGDRTTPHA
QTGPSPWSLNEVGEEMYWASKIAAVIIEPLKRTGGGHVFLNSANFERAQD
KTCPSTALSTVSSPGRPSRNETVPMSH
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mRNA from alignment at A-nodosum_M_contig942:15524..19486+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig942.6.1 ID=mRNA_A-nodosum_M_contig942.6.1|Name=mRNA_A-nodosum_M_contig942.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3963bp|location=Sequence derived from alignment at A-nodosum_M_contig942:15524..19486+ (Ascophyllum nodosum dioecious)
TCCAAGTGGGGCTGTTCCGGCGCGTGCAGGCAGACCCCAGCCCAGAGCGA
ACCGTGAGGTCGGTTTATTTTTGTCCGAATTGGAGTCGTGCTGGCGATTA
CGTTGTATCGGCTAGGCTGATGAAACGCATTGGGTTCTCATGGCGCTTTG
GACTTCAAGGAGAAGCAAGGCAAACGAAGACGAGCACATGACTGTAACTA
CAGGGCGTTCGAGGGACATTATTGTGCTTTGAGAACCATGATACTCTTAC
GGCCATCACTGATCGGACTCATTTCACTCAAGCAGGGACAACTCGAGTCT
ACGCTTCCTGCACTCGGTAAAGCTCGATGCGTCAGTGCTGAAGCGCTCCA
CAGAGGAAGCGAAAGAGTTGGAGGCGCACACGGCGGCTTTGGAGGTCGCA
GACTCTGTTCTGGACGTAAGGCATGCTTTCTTCCAGGCGAGATCTTCTAC
CGCTACCTGGCTAACACGACGTGCCTTGCCGGAGACGTCGTAAAATATCT
ACCCACTTGTACGACGCCTGATGGGAATCAGCAACGTTTCAAGTTCGTCT
TTAGTGTGCATTAGCACTCATGAGACTTCAGGCATATATTTAGCTATCCC
CCTCTGATCTCTATTACGGTCCTAACTAACTCCCCGCCAGGCCGACATAA
GAGAAACGGGAACCCTTACGCAGCTCGAGCTTAGCGGCGCCATGAGGAAC
GTGACGGGGGAGACACCTAAACAAGATGAGACGGCTCGAATTCTGCGAAC
TTTCGGAGAAGAGGGCGCTGAGGGTAAGTGGTTGATGATGCTCGGCGGGG
ATGGGAAATGTTAGATAGGTGGGTGCGCGAAGCGCTCGGTACATGTCCCC
GCTAACCAAATGAAAACGCGCTTTCAACGAAAGTCGACGCCTCACTGTTT
GCCTGTGGCTGGAAGAGGTGAACCGAGGAGCCGTTCCGAATATGCAGTAG
GATTCCCCTTGAATACGTTGAGTATATTGTTCCGATGTGTCTTTCATGTT
TTCGTCTTTTTCGTCTATGGCTACACATCCTCGCAGGAAAGGATCCCAAC
CTGATTGGTCTAAGGGGGTTTGAGGCCGCGATGGCCAGAATACTACGAGA
GACCCATTCATTGCCGCTTCTACCTCGGGTATGCGACGATCTGCTCTTTG
GGCCAGCGGTAGACACAGACAAACAGGCGAGTTTTTTTACGTTAGTGATC
GATGCTTAGAACTCCAACATCACTTACTGGTTTTACCAACTTTCACGAGC
TTGCCATCCGTATATGACTTCCATTTAACCTCAGCTCACATTTGAAAACT
TCGTGATGGCCTGCCCGGCGAGAAATTTCCTCTGGCAAACAAAAGCTGAG
CTGCCAAGTCTCTTGGCACCAACGCAGGCAATTTTGATCGAACGTTGTTT
CGCTTCTGCGTCTAGACTTTTTGTTCTTGCGACGGCATACGCGGCGTGAT
CTCTGCCGCACAGGCGAGGGGTGACGGGAAGTGACCTGCCCTTCGACACT
TGGATGATACCGCCACTGCTAGCGACCCCGCGCCCAACGTCTCCATCGTC
AACCGTTGGAACTCCTCCGTCACTCAATGCGATCGATTTTCCGGCACCGC
GCATGATAGTGGTACCATGGCGCCTCCAGTCGGCATCGCTGATTTCACTC
TTCGTAAGACCTCGTCCTATTACCAGACGCTTGGCGCCTCCCTTATTTTG
CAGCCGGTTGACATCCAGTCTGGAGTATCTCTCCACCTCGCCCCGGCTGC
CACCCGACCTGATCTCACGGGACCTCGACTGAGGCAGACTTCGTCCAGTG
TGCGTGGCTTTTTGTTGACCCTGCTGCTGGGAAAAGGGCAGCGCGTCTGC
TAGCACACACTTAGCTGGTTCGGCTCTCGGAGCGGTGGGCGTCACTGTTG
CGTGCGCCAACGCGGTCCTCTAGGTCGCCTGTCTTTTCTAGTCACCCTCG
TGCGGCCGTATTCTCCACTCTCGGACGTCCGCGCCTCTGTTTTACGATAG
GGGACTCCCATCGTTCCTCCTGCGGGCGATTTCGTGGCACCGCGGAAAAC
GTCACGGCCGGCTCGATCACGACCACCACCTTGACCGTGCTTCCGCATCT
TCGTCGGACTTGTACAGCTGGCCTCATGATAGTCGAAGATTCTCTCCATT
CCGTCGTTGATCTCGACGCCGTATTTATCCCGCTTATGCCGTCTCTTCCA
CTCTTGCAACCGGGAGGACACTTGCTCACGGGGTCGCTGCTGCGAATGAT
ACCCTGCCCCTCTGTCTCACCGAGCTGGGGTCCGTCCCAACATTCGTGCC
TCGGAGGTAAAGCCTGCGTTATTTCTGAACTCTTCCGCGAGAGAACCACC
ATCATTCCATCCATGGTTCTCGCCGGGCAGGCCATGACGAAATGAGACAG
TTCCGATGAGTCACGCTTTATTAATATCCTTGCCCAGCGTTTGCAGACCA
AGTCATTCATTGTGGACACAACTCGCTCGCGCCCATTAGGAACTTGAGCG
TTTGATCGATATCCTTTCGACCGGCAGAACTAACTTTATCCTTCTATGGA
CGCTACCCCATAACCGTTCAATTCCTTCGGTGATGCTTTCAAGAACTTCC
ACCCTGCAAGCAGCCCACGAGAAAAGCGATCAGAGGGCAAGCACAACCTC
GACAATGGGACAGACGAAAAAGGACATTCTCCGAGGGACCAACACTCCTC
GAAAACAGGTGAAAGGGCCGTGTCCTGGCGGCGTTCGCCGACGAAGGTAT
CGCCGCGAAATTCTGCAGAACGCACGAGAAGGAAGTTAGGGGAGGGGGCA
TCTGGAGCTGTAGCCCACAACAAAGTGAGGACGGAGCCACGTTTAACCGA
TACCAACGTGGTCACCGTCAAAGGAAAAGGAAAAGGAGAGACTACTGAGG
GAGGTCCCGCTTCTTGCGGAGTGGACGGCCGACGAAGGGATCGCACAACA
CCCCACGCTCAAGCCGGTCCGTCTCCCTGGAGCCTCAATGAGGTGGGCGA
GGAGATGTCCTGGGCCAGTAAAATCGCGGCGGTGATTAGAGAATCCTTGA
AGCGAGCCGGTGATGGTCGTGTTCTTCCGAACTCGGCCAATTTCGAGCGC
GCACAAGACGAAACATGTCCCAGTACAGCGCAGGGTATCGTCTCCTCACC
GGGCAGGGCATCACGAAACGAGACAGTTCCGGTGAGTCACGCTTTGTTAA
TATCCTTGCCCAGCGTTTGCAGACCAAGTTATCCATCGTGGACACAACTC
GCTCGCGCCCATTAGGAACTTGAGCGTTTGATCGATATCCTTTCGATGGG
CAGAACTAACTTTATCCTTCTATGGACGCTACCCCATAACCGTTCAATTC
CTTCGGTGATGCTTTCAAGAATTTGCGCTCTGCAAGAAGCCCACGAAAAA
AGCGACCAGAGGGCGAGCACGACCTCGACAATGGGACAGACGAAAGAGAA
CATTTTCCGAGGGACCAAATCTCCTCTAAAATAGGTGAAAGTGCCGTTTC
CTGTCGGCGTTCGCCGACGAAGGTATCGCCGCAAAGAATTTCTGCAGAAC
GCACGAGAAGAAATTTAAGGGGGGGGGCATCTGGAGCTGTAGCGCACGAC
AAAGTGAGGACGGAGCCACGTTTAACCGATACCAACATGGTCACCGTCAA
AGGAAAAGGAAATACTACTGGGGCAGGTTCCGGTTCTTTCGGAGTGGATG
GTCGACAAGGGGATCGCACAACACCCCACGCTCAAACCGGTCCGTCTCCC
TGGAGCCTCAATGAGGTGGGCGAGGAGATGTACTGGGCCAGTAAAATCGC
GGCGGTGATTATAGAACCCTTGAAGCGAACCGGTGGTGGTCATGTTTTCC
TGAACTCGGCCAATTTCGAGCGCGCACAAGACAAAACGTGTCCCAGTACA
GCTTTGAGTACCGTATCCTCGCCGGGCAGGCCATCACGAAACGAGACAGT
TCCGATGAGTCAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig942:15524..19486+

>mRNA_A-nodosum_M_contig942.6.1 ID=mRNA_A-nodosum_M_contig942.6.1|Name=mRNA_A-nodosum_M_contig942.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1431bp|location=Sequence derived from alignment at A-nodosum_M_contig942:15524..19486+ (Ascophyllum nodosum dioecious)
ATGAGGAACGTGACGGGGGAGACACCTAAACAAGATGAGACGGCTCGAAT
TCTGCGAACTTTCGGAGAAGAGGGCGCTGAGGGAAAGGATCCCAACCTGA
TTGGTCTAAGGGGGTTTGAGGCCGCGATGGCCAGAATACTACGAGAGACC
CATTCATTGCCGCTTCTACCTCGGGTATGCGACGATCTGCTCTTTGGGCC
AGCGGTAGACACAGACAAACAGTTCAATTCCTTCGGTGATGCTTTCAAGA
ACTTCCACCCTGCAAGCAGCCCACGAGAAAAGCGATCAGAGGGCAAGCAC
AACCTCGACAATGGGACAGACGAAAAAGGACATTCTCCGAGGGACCAACA
CTCCTCGAAAACAGGTGAAAGGGCCGTGTCCTGGCGGCGTTCGCCGACGA
AGGTATCGCCGCGAAATTCTGCAGAACGCACGAGAAGGAAGTTAGGGGAG
GGGGCATCTGGAGCTGTAGCCCACAACAAAGTGAGGACGGAGCCACGTTT
AACCGATACCAACGTGGTCACCGTCAAAGGAAAAGGAAAAGGAGAGACTA
CTGAGGGAGGTCCCGCTTCTTGCGGAGTGGACGGCCGACGAAGGGATCGC
ACAACACCCCACGCTCAAGCCGGTCCGTCTCCCTGGAGCCTCAATGAGGT
GGGCGAGGAGATGTCCTGGGCCAGTAAAATCGCGGCGGTGATTAGAGAAT
CCTTGAAGCGAGCCGGTGATGGTCGTGTTCTTCCGAACTCGGCCAATTTC
GAGCGCGCACAAGACGAAACATGTCCCAGTACAGCGCAGGGTATCGTCTC
CTCACCGGGCAGGGCATCACGAAACGAGACAGTTCCGAATTTGCGCTCTG
CAAGAAGCCCACGAAAAAAGCGACCAGAGGGCGAGCACGACCTCGACAAT
GGGACAGACGAAAGAGAACATTTTCCGAGGGACCAAATCTCCTCTAAAAT
AGGTGAAAGTGCCGTTTCCTGTCGGCGTTCGCCGACGAAGGTATCGCCGC
AAAGAATTTCTGCAGAACGCACGAGAAGAAATTTAAGGGGGGGGGCATCT
GGAGCTGTAGCGCACGACAAAGTGAGGACGGAGCCACGTTTAACCGATAC
CAACATGGTCACCGTCAAAGGAAAAGGAAATACTACTGGGGCAGGTTCCG
GTTCTTTCGGAGTGGATGGTCGACAAGGGGATCGCACAACACCCCACGCT
CAAACCGGTCCGTCTCCCTGGAGCCTCAATGAGGTGGGCGAGGAGATGTA
CTGGGCCAGTAAAATCGCGGCGGTGATTATAGAACCCTTGAAGCGAACCG
GTGGTGGTCATGTTTTCCTGAACTCGGCCAATTTCGAGCGCGCACAAGAC
AAAACGTGTCCCAGTACAGCTTTGAGTACCGTATCCTCGCCGGGCAGGCC
ATCACGAAACGAGACAGTTCCGATGAGTCAC
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