prot_A-nodosum_M_contig942.6.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig942.6.1
Unique Nameprot_A-nodosum_M_contig942.6.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length477
Homology
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BLAST of mRNA_A-nodosum_M_contig942.6.1 vs. uniprot
Match: D8LGJ5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ5_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 9.560e-15
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 0 
Query:    1 MRNVTGETPKQDETARILRTFGEEGAEGKDPNLIGLRGFEAAMARILRETHSLPLLPRVCDDLLFGPAVDTDKQ 74
            MR V G TPK  ET+R+LR FG  GA+G DPN+I L GFEAAM   LRE+H+LP+LP+  DDLLFG A D + Q
Sbjct:  200 MRIVMGVTPKAAETSRVLRFFGAPGAQGNDPNVINLGGFEAAMVGRLRESHTLPVLPQRRDDLLFGSAGDKEGQ 273
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BLAST of mRNA_A-nodosum_M_contig942.6.1 vs. uniprot
Match: A0A6H5JAS8_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAS8_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 6.600e-14
Identity = 44/74 (59.46%), Postives = 53/74 (71.62%), Query Frame = 0 
Query:    1 MRNVTGETPKQDETARILRTFGEEGAEGKDPNLIGLRGFEAAMARILRETHSLPLLPRVCDDLLFGPAVDTDKQ 74
            MR V G TPK  ET+R+LR FG  GA+G DPN+I L GFEAAM   LRE+H+LP+LP+  DDLLFG A   + Q
Sbjct:  146 MRIVMGVTPKAAETSRVLRFFGAPGAQGNDPNVINLGGFEAAMVGRLRESHTLPVLPQRRDDLLFGSAGGEEGQ 219
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig942.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGJ5_ECTSI9.560e-1560.81Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JAS8_9PHAE6.600e-1459.46EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 250..282
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 286..313
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 316..335
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 454..477
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..213
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 247..343
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig942contigA-nodosum_M_contig942:16215..19486 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig942.6.1mRNA_A-nodosum_M_contig942.6.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig942 15524..19486 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig942.6.1 ID=prot_A-nodosum_M_contig942.6.1|Name=mRNA_A-nodosum_M_contig942.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=477bp
MRNVTGETPKQDETARILRTFGEEGAEGKDPNLIGLRGFEAAMARILRET
HSLPLLPRVCDDLLFGPAVDTDKQFNSFGDAFKNFHPASSPREKRSEGKH
NLDNGTDEKGHSPRDQHSSKTGERAVSWRRSPTKVSPRNSAERTRRKLGE
GASGAVAHNKVRTEPRLTDTNVVTVKGKGKGETTEGGPASCGVDGRRRDR
TTPHAQAGPSPWSLNEVGEEMSWASKIAAVIRESLKRAGDGRVLPNSANF
ERAQDETCPSTAQGIVSSPGRASRNETVPNLRSARSPRKKRPEGEHDLDN
GTDEREHFPRDQISSKIGESAVSCRRSPTKVSPQRISAERTRRNLRGGAS
GAVAHDKVRTEPRLTDTNMVTVKGKGNTTGAGSGSFGVDGRQGDRTTPHA
QTGPSPWSLNEVGEEMYWASKIAAVIIEPLKRTGGGHVFLNSANFERAQD
KTCPSTALSTVSSPGRPSRNETVPMSH
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