mRNA_A-nodosum_M_contig125.18.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig125.18.1
Unique NamemRNA_A-nodosum_M_contig125.18.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5KIS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.350e-23
Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   16 TEGECMAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 195
            TE ECM VLW + HFRP +AGRRF LVTDCSALTWLFRSR L  KLHRWAL L EYD++L
Sbjct:  363 TERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMEL 422
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BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5JIH2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH2_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 3.080e-23
Identity = 44/60 (73.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:   16 TEGECMAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 195
            TE ECM VLW + HFRP +AGRRF LVTDCSALTWLFRSR L   LHRWAL L EYD++L
Sbjct:  231 TERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPTLHRWALRLMEYDLEL 290
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BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5K9Z4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z4_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 3.130e-23
Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   16 TEGECMAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 195
            TE ECM VLW + HFRP +AGRRF LVTDCSALTWLFRSR L  KLHRWAL L EYD++L
Sbjct:  402 TERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMEL 461
[Close]
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5KGF2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF2_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 3.500e-23
Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   16 TEGECMAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 195
            TE ECM VLW + HFRP +AGRRF LVTDCSALTWLFRSR L  KLHRWAL L EYD++L
Sbjct:  378 TERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMEL 437
[Close]
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5JQV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 3.530e-23
Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   16 TEGECMAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 195
            TE ECM VLW + HFRP +AGRRF LVTDCSALTWLFRSR L  KLHRWAL L EYD++L
Sbjct:  503 TERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMEL 562
[Close]
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 3.570e-23
Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   16 TEGECMAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 195
            TE ECM VLW + HFRP +AGRRF LVTDCSALTWLFRSR L  KLHRWAL L EYD++L
Sbjct:  505 TERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMEL 564
[Close]
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 3.590e-23
Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   16 TEGECMAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 195
            TE ECM VLW + HFRP +AGRRF LVTDCSALTWLFRSR L  KLHRWAL L EYD++L
Sbjct: 1027 TERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMEL 1086
[Close]
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5JZD5_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD5_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 4.630e-23
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   16 TEGECMAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 195
            TE ECM VLW + HFRP +AGRRF LVTDCSALTWLFRSR L  KLHRWAL L EY+++L
Sbjct:  104 TERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYEMEL 163
[Close]
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.500e-21
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:   16 TEGECMAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 195
            TE ECM VLW + HF+P +AGR+F +VTDCSALTWLFRSR L  KLHRWAL L EYDI L
Sbjct:  649 TERECMGVLWGVDHFKPYLAGRQFKVVTDCSALTWLFRSRELCPKLHRWALRLMEYDIGL 708
[Close]
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5JIE2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIE2_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.350e-20
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:   16 TEGECMAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 195
            TE E M VLW + HFRP +A RRF LVTDCSALTWLFRSR L  KLHRWAL L EYD++L
Sbjct:  263 TEREGMGVLWAVDHFRPCLACRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMEL 322
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIS6_9PHAE2.350e-2375.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIH2_9PHAE3.080e-2373.33Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K9Z4_9PHAE3.130e-2375.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGF2_9PHAE3.500e-2375.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQV6_9PHAE3.530e-2375.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFK7_9PHAE3.570e-2375.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE3.590e-2375.00RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5JZD5_9PHAE4.630e-2373.33RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KBF4_9PHAE1.500e-2171.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIE2_9PHAE3.350e-2071.67Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig125contigA-nodosum_M_contig125:127395..127592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra78393
PFAMsRetrotrans_gag,rve,zf-CCHC
Model size198
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.34e-15
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QH6E@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size168
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866680.625204-UTR-A-nodosum_M_contig125:127394..1274241680866680.625204-UTR-A-nodosum_M_contig125:127394..127424Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig125 127395..127424 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866680.635826-CDS-A-nodosum_M_contig125:127424..1275921680866680.635826-CDS-A-nodosum_M_contig125:127424..127592Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig125 127425..127592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig125.18.1prot_A-nodosum_M_contig125.18.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig125 127425..127592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig125.18.1

>prot_A-nodosum_M_contig125.18.1 ID=prot_A-nodosum_M_contig125.18.1|Name=mRNA_A-nodosum_M_contig125.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=56bp
MAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQE
YDIDL*
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mRNA from alignment at A-nodosum_M_contig125:127395..127592+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig125.18.1 ID=mRNA_A-nodosum_M_contig125.18.1|Name=mRNA_A-nodosum_M_contig125.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at A-nodosum_M_contig125:127395..127592+ (Ascophyllum nodosum dioecious)
ACCACACACAACTCTACAGAAGGAGAATGCATGGCTGTTCTATGGACTAT
CAAACACTTTAGACCAAACGTGGCAGGTAGACGCTTTGCCTTGGTGACAG
ATTGCTCTGCACTCACATGGCTGTTTCGCAGTCGCAACCTCGACTCCAAA
CTACATAGGTGGGCTCTGAGCCTACAAGAGTACGATATAGATTTGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig125:127395..127592+

>mRNA_A-nodosum_M_contig125.18.1 ID=mRNA_A-nodosum_M_contig125.18.1|Name=mRNA_A-nodosum_M_contig125.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=168bp|location=Sequence derived from alignment at A-nodosum_M_contig125:127395..127592+ (Ascophyllum nodosum dioecious)
ATGGCTGTTCTATGGACTATCAAACACTTTAGACCAAACGTGGCAGGTAG
ACGCTTTGCCTTGGTGACAGATTGCTCTGCACTCACATGGCTGTTTCGCA
GTCGCAACCTCGACTCCAAACTACATAGGTGGGCTCTGAGCCTACAAGAG
TACGATATAGATTTGTGA
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