prot_A-nodosum_M_contig125.18.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig125.18.1
Unique Nameprot_A-nodosum_M_contig125.18.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length56
Homology
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5KIS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS6_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.800e-21
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0
Query:    1 MAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 55
            M VLW + HFRP +AGRRF LVTDCSALTWLFRSR L  KLHRWAL L EYD++L
Sbjct:  368 MGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMEL 422          
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5K9Z4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z4_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 8.140e-21
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0
Query:    1 MAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 55
            M VLW + HFRP +AGRRF LVTDCSALTWLFRSR L  KLHRWAL L EYD++L
Sbjct:  407 MGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMEL 461          
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5KGF2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF2_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 8.550e-21
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0
Query:    1 MAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 55
            M VLW + HFRP +AGRRF LVTDCSALTWLFRSR L  KLHRWAL L EYD++L
Sbjct:  383 MGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMEL 437          
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5JQV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV6_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 8.580e-21
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0
Query:    1 MAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 55
            M VLW + HFRP +AGRRF LVTDCSALTWLFRSR L  KLHRWAL L EYD++L
Sbjct:  508 MGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMEL 562          
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 8.610e-21
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0
Query:    1 MAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 55
            M VLW + HFRP +AGRRF LVTDCSALTWLFRSR L  KLHRWAL L EYD++L
Sbjct:  510 MGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMEL 564          
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 8.620e-21
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0
Query:    1 MAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 55
            M VLW + HFRP +AGRRF LVTDCSALTWLFRSR L  KLHRWAL L EYD++L
Sbjct: 1032 MGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMEL 1086          
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5JIH2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH2_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.160e-20
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 0
Query:    1 MAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 55
            M VLW + HFRP +AGRRF LVTDCSALTWLFRSR L   LHRWAL L EYD++L
Sbjct:  236 MGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPTLHRWALRLMEYDLEL 290          
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5JZD5_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD5_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.550e-20
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 0
Query:    1 MAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 55
            M VLW + HFRP +AGRRF LVTDCSALTWLFRSR L  KLHRWAL L EY+++L
Sbjct:  109 MGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYEMEL 163          
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5JIE2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIE2_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.940e-19
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 0
Query:    1 MAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 55
            M VLW + HFRP +A RRF LVTDCSALTWLFRSR L  KLHRWAL L EYD++L
Sbjct:  268 MGVLWAVDHFRPCLACRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMEL 322          
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.620e-19
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 0
Query:    1 MAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQEYDIDL 55
            M VLW + HF+P +AGR+F +VTDCSALTWLFRSR L  KLHRWAL L EYDI L
Sbjct:  654 MGVLWGVDHFKPYLAGRQFKVVTDCSALTWLFRSRELCPKLHRWALRLMEYDIGL 708          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig125.18.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIS6_9PHAE6.800e-2174.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9Z4_9PHAE8.140e-2174.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGF2_9PHAE8.550e-2174.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQV6_9PHAE8.580e-2174.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFK7_9PHAE8.610e-2174.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE8.620e-2174.55RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5JIH2_9PHAE1.160e-2072.73Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JZD5_9PHAE1.550e-2072.73RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JIE2_9PHAE1.940e-1972.73Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBF4_9PHAE3.620e-1970.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041373Reverse transcriptase, RNase H-like domainPFAMPF17917RT_RNaseHcoord: 1..51
e-value: 1.0E-12
score: 48.2
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 1..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig125contigA-nodosum_M_contig125:127425..127592 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig125.18.1mRNA_A-nodosum_M_contig125.18.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig125 127395..127592 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig125.18.1 ID=prot_A-nodosum_M_contig125.18.1|Name=mRNA_A-nodosum_M_contig125.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=56bp
MAVLWTIKHFRPNVAGRRFALVTDCSALTWLFRSRNLDSKLHRWALSLQE
YDIDL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041373RT_RNaseH
IPR043502DNA/RNA_pol_sf