prot_A-nodosum_M_contig904.8.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig904.8.1
Unique Nameprot_A-nodosum_M_contig904.8.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length492
Homology
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BLAST of mRNA_A-nodosum_M_contig904.8.1 vs. uniprot
Match: A0A6H5JQS7_9PHAE (VHS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS7_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.420e-10
Identity = 88/224 (39.29%), Postives = 104/224 (46.43%), Query Frame = 0 
Query:    1 MLVAYNAGQFNA---NNARGASG-SAAGFDSSSSAALGSTTPSNFPS--ETGAVFGSNP---------------AGSSYGGGGDSGAGFAPSDLFAPF--GSAPGSEAPQAPE-------------------PNQSHASIISVTRSSSRGPKR-----ASSSQDMS-DFGSWMSSVQGTGLGADPFAPSP-AAGYANG--------RLPVVRESPSFASSNGGG 167
            M+VAY  GQF A   N+  G SG    GFDS S A  GS T SN+ S  +TGAV+GSN                   S GGGGD  +GFAP D FA    GSAP + AP  P                    P    +SI+SVT SS+    +     A   Q +S DFGSWMSS  G             +AG+ANG        +L  + ESPS ASSNGGG
Sbjct:  456 MMVAYTDGQFMASTSNSVGGVSGVGGVGFDSLSGAGQGSATASNYASASDTGAVYGSNQFXXXXXXXXXXXXXXXXXSGGGGGDFSSGFAPRDPFAAAFGGSAPSAAAPDVPPGAPDEPAPRPLPAFFPGGIPGNQSSSIVSVTSSSATNRNQGVLGVAQQRQSLSTDFGSWMSSRGGPXXXXXXXXXXXXSAGFANGLLGGPGRHKLYSLHESPSLASSNGGG 679
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig904.8.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JQS7_9PHAE6.420e-1039.29VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 277..307
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 242..264
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 393..426
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..491
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 435..477
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 175..190
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 327..345
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 208..232

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig904contigA-nodosum_M_contig904:73470..75622 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig904.8.1mRNA_A-nodosum_M_contig904.8.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig904 73377..76139 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig904.8.1 ID=prot_A-nodosum_M_contig904.8.1|Name=mRNA_A-nodosum_M_contig904.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=492bp
MLVAYNAGQFNANNARGASGSAAGFDSSSSAALGSTTPSNFPSETGAVFG
SNPAGSSYGGGGDSGAGFAPSDLFAPFGSAPGSEAPQAPEPNQSHASIIS
VTRSSSRGPKRASSSQDMSDFGSWMSSVQGTGLGADPFAPSPAAGYANGR
LPVVRESPSFASSNGGGGGLNPFGPPQPSTATSGGFPSQERQPAPGTGAG
AAGATPSTDVSDLFSFTSSASGGGSVSGGDWTGGRSTRGGFPLQRASVSA
SGSAAFSDFSSAGPQQPVPVAPPMQQPLPQQQQQSGMFWQAQQDRQQQRQ
QQPQRADPFADASIVPAARGSGRGGSGGNPTPFTTDRNDPFTQLPAASTG
PGAGGGHSATGSGNDGSFSQALVLHGGGDGGASGGGGRDSTKFNPFDDQS
GATTTFGPQQQAQQQRQQQQQLQPHRFPHPGQGHRQHSQRWQQMQQPQQA
PQAPFQQAPQLQSYGQGYQQQQQPPPQQQQRPQQPPDHHFV*
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