|
|
Homology
BLAST of mRNA_A-nodosum_M_contig904.8.1 vs. uniprot
Match: A0A6H5JQS7_9PHAE (VHS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS7_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 1.390e-12 Identity = 99/251 (39.44%), Postives = 117/251 (46.61%), Query Frame = 1
Query: 22 LDLEESAPLEA---GAGVGGRASAGGGMLVAYNAGQFNA---NNARGASG-SAAGFDSSSXAALGSTTPSNFPS--ETGAVFGSNP---------------AGSSYGGGGDSGAGFAPSDLFAPF--GSAPGSEAPQAPE-------------------PNQSHASIISVTRSSSRGPKR-----ASSSQDMS-DFGSWMSSVQGTGLGADPFAPSP-AAGYANG--------RLPVVRESPSFASSNGGG 594
LDLEE+ PL+ G G GG M+VAY GQF A N+ G SG GFDS S A GS T SN+ S +TGAV+GSN S GGGGD +GFAP D FA GSAP + AP P P +SI+SVT SS+ + A Q +S DFGSWMSS G +AG+ANG +L + ESPS ASSNGGG
Sbjct: 436 LDLEENTPLDTSMTGEGAGG-------MMVAYTDGQFMASTSNSVGGVSGVGGVGFDSLSGAGQGSATASNYASASDTGAVYGSNQFXXXXXXXXXXXXXXXXXSGGGGGDFSSGFAPRDPFAAAFGGSAPSAAAPDVPPGAPDEPAPRPLPAFFPGGIPGNQSSSIVSVTSSSATNRNQGVLGVAQQRQSLSTDFGSWMSSRGGPXXXXXXXXXXXXSAGFANGLLGGPGRHKLYSLHESPSLASSNGGG 679
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2086 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Ec32 ortholog description | ENTH/VHS |
| Ec32 ortholog | Ec-21_004690.2 |
| Cds size | 1476 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680870350.8052373-UTR-A-nodosum_M_contig904:73376..73469 | 1680870350.8052373-UTR-A-nodosum_M_contig904:73376..73469 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig904 73377..73469 + |
| 1680870350.9137294-UTR-A-nodosum_M_contig904:75622..76139 | 1680870350.9137294-UTR-A-nodosum_M_contig904:75622..76139 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig904 75623..76139 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680870350.8831017-CDS-A-nodosum_M_contig904:73469..73674 | 1680870350.8831017-CDS-A-nodosum_M_contig904:73469..73674 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig904 73470..73674 + |
| 1680870350.900756-CDS-A-nodosum_M_contig904:74351..75622 | 1680870350.900756-CDS-A-nodosum_M_contig904:74351..75622 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig904 74352..75622 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig904.8.1 >prot_A-nodosum_M_contig904.8.1 ID=prot_A-nodosum_M_contig904.8.1|Name=mRNA_A-nodosum_M_contig904.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=492bp
MLVAYNAGQFNANNARGASGSAAGFDSSSSAALGSTTPSNFPSETGAVFG
SNPAGSSYGGGGDSGAGFAPSDLFAPFGSAPGSEAPQAPEPNQSHASIIS
VTRSSSRGPKRASSSQDMSDFGSWMSSVQGTGLGADPFAPSPAAGYANGR
LPVVRESPSFASSNGGGGGLNPFGPPQPSTATSGGFPSQERQPAPGTGAG
AAGATPSTDVSDLFSFTSSASGGGSVSGGDWTGGRSTRGGFPLQRASVSA
SGSAAFSDFSSAGPQQPVPVAPPMQQPLPQQQQQSGMFWQAQQDRQQQRQ
QQPQRADPFADASIVPAARGSGRGGSGGNPTPFTTDRNDPFTQLPAASTG
PGAGGGHSATGSGNDGSFSQALVLHGGGDGGASGGGGRDSTKFNPFDDQS
GATTTFGPQQQAQQQRQQQQQLQPHRFPHPGQGHRQHSQRWQQMQQPQQA
PQAPFQQAPQLQSYGQGYQQQQQPPPQQQQRPQQPPDHHFV* back to topmRNA from alignment at A-nodosum_M_contig904:73377..76139+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig904.8.1 ID=mRNA_A-nodosum_M_contig904.8.1|Name=mRNA_A-nodosum_M_contig904.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2763bp|location=Sequence derived from alignment at A-nodosum_M_contig904:73377..76139+ (Ascophyllum nodosum dioecious)
GCCACGGCGAACCTCCTTGACCTTGACCTCGAGGAAAGCGCGCCATTAGA
GGCAGGGGCGGGGGTCGGAGGGAGAGCGTCGGCAGGGGGGGGCATGCTGG
TCGCCTACAACGCGGGGCAGTTCAACGCGAATAACGCCCGCGGGGCCAGC
GGGAGCGCGGCCGGGTTTGACAGCTCGTCGAGCGCGGCGCTAGGGAGCAC
AACGCCGAGCAACTTCCCTAGCGAGACGGGAGCGGTCTTCGGGAGTAATC
CGGCCGGGAGCAGCTATGGAGGAGGCGGGGACAGCGGGGCGGGTTTCGGT
GAGAGCGCGCGTCTGTTTTTTTTGTTATCTGTTTGATGTAGTTCTCTATT
ACTAGTGCGAGTTTTTGCGTCTTTTAATGACAGCGAAAGGTCATACTGTA
GTTGCTACAGCGCCGTACTGTACTGAGTGTAGAGTCTTTTATAATATATT
TCAACGCGAAGTGTCTTCCCCTACCCAAGCGCCCTTGGTTCGGGGGGTAT
TTCTCGTCCTCCAACGGTCAAACGAGGTAGGTGTCTTGAGAGACCGGCTG
CGGGATCCTAGATTTCAGATTGGTCTGGCTCCTGACACTTGATGGAATCG
ATCAAAATATGTTGTCAACAAACTTGGGATATTGCAAATAACGATGGTCG
GACGGACGTCCATTTGAGACTCCGTCTACAAAAAACGAGAAGTCGGTGTA
AAAGCTACAAAGAAGAGCATTTGAGGCATCGGGGGCCTTTGCTACTCATT
CCAATCGCGTAGTAATGTTCCTGGCGCTTGTGGGTACATACCAAGAAGTT
ATTGTAGACGAACTTGATATGGCGCATAGGATGGCGCACATGAAACGCTT
GGTCGACCGAATGCACGTCTACAGAGTAATGTGGATCCGATTCAAGACGT
CTAGTGTAGTGTAGGTACCACAACCTCAAGACCTCGACACCCCCGCGCCC
CGCGTACGACGCCGCGTGCGTGCAGCCCCGTCAGATCTGTTCGCGCCGTT
CGGAAGTGCACCGGGCTCTGAGGCACCACAAGCACCAGAGCCGAATCAGT
CTCACGCCTCCATAATCTCGGTCACAAGGTCCTCGTCGAGAGGCCCGAAG
AGAGCGTCATCATCGCAAGATATGTCAGATTTTGGGTCCTGGATGTCCTC
GGTGCAGGGAACGGGACTGGGCGCGGATCCATTCGCGCCGTCCCCAGCCG
CGGGGTACGCCAACGGGCGGCTTCCGGTCGTGAGGGAGTCCCCTTCTTTT
GCCTCGAGCAACGGCGGTGGTGGCGGCTTGAACCCTTTTGGGCCACCCCA
GCCGTCTACAGCGACGTCCGGGGGGTTTCCATCGCAGGAGCGGCAACCAG
CACCGGGGACAGGGGCGGGCGCGGCGGGCGCTACTCCAAGCACAGATGTG
TCGGATCTATTTTCCTTTACGTCGAGCGCGAGCGGAGGGGGGAGCGTCAG
CGGCGGTGATTGGACAGGGGGTAGGTCGACGAGGGGAGGGTTTCCACTTC
AGAGGGCGTCGGTGTCAGCGTCCGGCAGTGCGGCGTTCTCGGATTTTTCG
AGCGCCGGGCCGCAACAGCCGGTGCCAGTCGCGCCACCAATGCAGCAGCC
CCTGCCGCAGCAGCAACAGCAGTCGGGGATGTTTTGGCAAGCTCAGCAAG
ACCGCCAGCAGCAAAGACAGCAGCAGCCGCAACGCGCGGACCCATTTGCA
GATGCGTCCATCGTGCCCGCCGCTAGGGGTTCAGGGCGTGGCGGAAGCGG
TGGCAATCCGACACCGTTCACAACCGACAGAAACGATCCGTTCACCCAGC
TCCCCGCGGCTTCGACGGGGCCTGGCGCTGGAGGAGGACATTCTGCGACA
GGGTCGGGAAACGACGGATCTTTTAGCCAGGCGTTGGTATTACACGGAGG
CGGGGATGGGGGTGCGTCGGGCGGCGGCGGGAGAGATTCGACGAAATTCA
ACCCGTTCGACGATCAGTCTGGAGCGACGACTACATTTGGCCCGCAGCAG
CAGGCTCAACAGCAGCGGCAGCAGCAACAACAACTGCAGCCGCACCGTTT
CCCTCACCCCGGGCAGGGCCATCGGCAACATTCGCAACGCTGGCAACAAA
TGCAGCAACCCCAGCAGGCGCCGCAAGCGCCGTTCCAACAAGCGCCTCAG
CTTCAGAGCTACGGCCAAGGTTATCAGCAGCAGCAACAGCCGCCGCCGCA
GCAGCAGCAGCGGCCACAGCAGCCGCCCGACCATCATTTCGTGTAGACCT
CTCGCGGAACGACTTGGTGATAATGCCTTTGCTCGATCACCCTTTGATTT
AGAAAGAGTGACGAGTAAAAGAGGGTGGTTGATCACACTCTTGATCGTGC
TGTCGTGTGATTAGTTTGTCTCTTTCCACGGATCTCTCGCGAGGGATGAG
GTTGCAGACAAACCGCGTGCGGACGAGCCGCCGAAGAAAGGCTGGCGCGG
GAGGCAGACCGTGAGAGGGAACCAACCGCGCGCTCGGTTGCGGCGGGCGT
TTGCTCCACGTCTGTCTGTGTCTTTTCTGCTCTTGTGTGGAAACCGTATT
GAAAAAAAATGCAGTTTTTTGTTGCAGGCAGTCTAACGCCGCACACTCTC
TCTCTCTTATCTCATCCACCCGATTGACCTCCCTTGCCGCAGTGCTGTAC
ATGGCATTGATCACGTGTACTATTTTTTTCCATCGACTGTGTGCTTCGTT
ACTATAAAGTGCAATTTTTTATTCTTCCTGTACGTAGAAACCGTTGGGTT
TATCCCCCCCCCC back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig904:73377..76139+ >mRNA_A-nodosum_M_contig904.8.1 ID=mRNA_A-nodosum_M_contig904.8.1|Name=mRNA_A-nodosum_M_contig904.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1476bp|location=Sequence derived from alignment at A-nodosum_M_contig904:73377..76139+ (Ascophyllum nodosum dioecious)
ATGCTGGTCGCCTACAACGCGGGGCAGTTCAACGCGAATAACGCCCGCGG
GGCCAGCGGGAGCGCGGCCGGGTTTGACAGCTCGTCGAGCGCGGCGCTAG
GGAGCACAACGCCGAGCAACTTCCCTAGCGAGACGGGAGCGGTCTTCGGG
AGTAATCCGGCCGGGAGCAGCTATGGAGGAGGCGGGGACAGCGGGGCGGG
TTTCGCCCCGTCAGATCTGTTCGCGCCGTTCGGAAGTGCACCGGGCTCTG
AGGCACCACAAGCACCAGAGCCGAATCAGTCTCACGCCTCCATAATCTCG
GTCACAAGGTCCTCGTCGAGAGGCCCGAAGAGAGCGTCATCATCGCAAGA
TATGTCAGATTTTGGGTCCTGGATGTCCTCGGTGCAGGGAACGGGACTGG
GCGCGGATCCATTCGCGCCGTCCCCAGCCGCGGGGTACGCCAACGGGCGG
CTTCCGGTCGTGAGGGAGTCCCCTTCTTTTGCCTCGAGCAACGGCGGTGG
TGGCGGCTTGAACCCTTTTGGGCCACCCCAGCCGTCTACAGCGACGTCCG
GGGGGTTTCCATCGCAGGAGCGGCAACCAGCACCGGGGACAGGGGCGGGC
GCGGCGGGCGCTACTCCAAGCACAGATGTGTCGGATCTATTTTCCTTTAC
GTCGAGCGCGAGCGGAGGGGGGAGCGTCAGCGGCGGTGATTGGACAGGGG
GTAGGTCGACGAGGGGAGGGTTTCCACTTCAGAGGGCGTCGGTGTCAGCG
TCCGGCAGTGCGGCGTTCTCGGATTTTTCGAGCGCCGGGCCGCAACAGCC
GGTGCCAGTCGCGCCACCAATGCAGCAGCCCCTGCCGCAGCAGCAACAGC
AGTCGGGGATGTTTTGGCAAGCTCAGCAAGACCGCCAGCAGCAAAGACAG
CAGCAGCCGCAACGCGCGGACCCATTTGCAGATGCGTCCATCGTGCCCGC
CGCTAGGGGTTCAGGGCGTGGCGGAAGCGGTGGCAATCCGACACCGTTCA
CAACCGACAGAAACGATCCGTTCACCCAGCTCCCCGCGGCTTCGACGGGG
CCTGGCGCTGGAGGAGGACATTCTGCGACAGGGTCGGGAAACGACGGATC
TTTTAGCCAGGCGTTGGTATTACACGGAGGCGGGGATGGGGGTGCGTCGG
GCGGCGGCGGGAGAGATTCGACGAAATTCAACCCGTTCGACGATCAGTCT
GGAGCGACGACTACATTTGGCCCGCAGCAGCAGGCTCAACAGCAGCGGCA
GCAGCAACAACAACTGCAGCCGCACCGTTTCCCTCACCCCGGGCAGGGCC
ATCGGCAACATTCGCAACGCTGGCAACAAATGCAGCAACCCCAGCAGGCG
CCGCAAGCGCCGTTCCAACAAGCGCCTCAGCTTCAGAGCTACGGCCAAGG
TTATCAGCAGCAGCAACAGCCGCCGCCGCAGCAGCAGCAGCGGCCACAGC
AGCCGCCCGACCATCATTTCGTGTAG back to top
|