mRNA_A-nodosum_M_contig8856.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8856.3.1
Unique NamemRNA_A-nodosum_M_contig8856.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: D7G6K9_ECTSI (Chaperonin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K9_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 2.480e-49
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 1
Query:   10 MSSLAITLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKVR 282
            MSSL ITL+D+VIDKPLQPV NYILVKMF A+SRTAGGIVLPDEAQDVPCEG VVA GPGRTHPLTGTLIPMCVSEGDTVLFSR+SGRKV+
Sbjct:   61 MSSLVITLEDDVIDKPLQPVGNYILVKMFAAVSRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVK 151          
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: A0A835YHA6_9STRA (Chaperonin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHA6_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.620e-29
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 1
Query:    4 TC--MSSLAITLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKVREENI 294
            TC  M+ L  TLDD+VI  PLQPVSN+ILVK+  + S T GGIVLPD++ D P EG VVA GPGR+HP T  LIPMCV+ G  V++S++SG+KV+ + +
Sbjct:   45 TCLTMAELVHTLDDKVIRGPLQPVSNFILVKIRDSASLTTGGIVLPDQSIDKPSEGEVVATGPGRSHPHTAELIPMCVAPGQRVMYSKYSGKKVKYDGL 143          
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: F0Y075_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y075_AURAN)

HSP 1 Score: 91.7 bits (226), Expect = 4.470e-22
Identity = 44/85 (51.76%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   58 LQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKVR---EENIVVK 303
            L PV NY LVK+      T GG++LPD+A++ P EGSVVAAGPGR+HP TGTLI M V+EG++VL+ +F G  V+   E++++++
Sbjct:    2 LSPVGNYALVKITEGKDATKGGVLLPDQAKEKPSEGSVVAAGPGRSHPDTGTLIAMPVAEGESVLYGKFDGTPVKYCGEDHMLIR 86          
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: A0A8J2WID0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WID0_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.100e-21
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   28 TLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKVR 282
            TLDD  I  PL+PV+NYILVK+   I  T GG+ LPD+A++ P  G VVAAG G+ HP TG ++P  V+EGD VL+ +F G  V+
Sbjct:   32 TLDDAPIGGPLEPVANYILVKIDDGIDATKGGVFLPDQAKEKPSAGIVVAAGAGKAHPDTGVVVPNPVTEGDRVLYGKFDGTSVK 116          
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: A0A7R9UAA2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAA2_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.360e-19
Identity = 41/94 (43.62%), Postives = 65/94 (69.15%), Query Frame = 1
Query:   31 LDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKVR---EENIVVK 303
            LD   I   LQPVSN++LVK+  A+++TAGGI++P+ A+  P +G  VA GPGR HP TG L+P+ V  G+ V++  + G K++   E++++V+
Sbjct:   33 LDGRPITSDLQPVSNFVLVKLRDAMAQTAGGIIMPETAKKRPNDGLAVAVGPGRYHPETGKLMPVSVKAGERVMYGEYMGTKIKYNEEDHVLVR 126          
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: A0A8J6CGT7_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CGT7_DIALT)

HSP 1 Score: 85.1 bits (209), Expect = 6.600e-18
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   28 TLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKVR 282
            TLD+ V+D PLQP+ + +LVK+  A  +T GG+ L  E  D P  G+VVAAGPG+ HP T  +I   +  GDT+LF  ++G KV+
Sbjct:   50 TLDNMVLDGPLQPLKDQVLVKLAGAEKQTKGGLFLTGEMTDKPTRGTVVAAGPGKPHPYTDVMITNPIKAGDTILFGSYTGTKVK 134          
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: A0A7S2XTD7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTD7_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.310e-17
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   10 MSSLAITLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSG 270
            ++S   TLD E I  P+ P+ N++LV+    +S T GGI+LPD+AQ+ P EG V+AAGPG  HP TG LI   V +G  VL+ ++ G
Sbjct:   51 LASGPTTLDGETIRGPIAPLGNFVLVRTKDMLSSTEGGILLPDQAQERPTEGEVMAAGPGNIHPDTGILIDNPVIKGMNVLYGKYDG 137          
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: A0A7S2E919_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E919_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 9.820e-17
Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 1
Query:   25 ITLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSG 270
            +TL+ E I   + P+ N++LV+   ++S T GGI+LPD++++ P EG VVAAGPG+ HP TGT I   V+ G  VL+ +F+G
Sbjct:   66 VTLEGEKIRGEITPLGNFVLVRQKDSLSATGGGILLPDQSKERPTEGEVVAAGPGKLHPHTGTRITNPVTAGVNVLYGKFAG 147          
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: A0A2M7I0G4_9BACT (Co-chaperonin GroES n=1 Tax=Ignavibacteriales bacterium CG12_big_fil_rev_8_21_14_0_65_30_8 TaxID=1974046 RepID=A0A2M7I0G4_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 4.430e-16
Identity = 36/77 (46.75%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   58 LQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKVREE 288
            L+P+++ ++VK   A  +T GGI+LPD A++ P EG++VAAGPGRT    G ++PM V +GD VL+ ++SG +V  E
Sbjct:    6 LKPLADRVIVKPMEADEKTKGGIILPDTAKEKPVEGTIVAAGPGRTSD-EGKVVPMSVKKGDKVLYGKYSGSEVTVE 81          
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: A0A2E5GEI2_9BACT (Co-chaperonin GroES n=2 Tax=root TaxID=1 RepID=A0A2E5GEI2_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 8.440e-16
Identity = 36/77 (46.75%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   58 LQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKVREE 288
            L+P+++ ++V+  PA  ++AGGI+LPD AQ+ P +GSVVA GPG++  + G LI M V EGD VL+ ++SG ++  E
Sbjct:    5 LKPLADRVVVEPAPAEDKSAGGIILPDTAQEKPQQGSVVAVGPGKSSDV-GNLIEMTVKEGDKVLYGKYSGSEITHE 80          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6K9_ECTSI2.480e-4989.01Chaperonin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G... [more]
A0A835YHA6_9STRA1.620e-2957.58Chaperonin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
F0Y075_AURAN4.470e-2251.76Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A8J2WID0_9STRA1.100e-2152.94Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9UAA2_9STRA3.360e-1943.62Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8J6CGT7_DIALT6.600e-1847.06Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S2XTD7_9STRA3.310e-1747.13Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2E919_9STRA9.820e-1746.34Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A2M7I0G4_9BACT4.430e-1646.75Co-chaperonin GroES n=1 Tax=Ignavibacteriales bact... [more]
A0A2E5GEI2_9BACT8.440e-1646.75Co-chaperonin GroES n=2 Tax=root TaxID=1 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8856contigA-nodosum_M_contig8856:6622..7593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog44056.XP_009033838.1
PFAMsCpn10
Model size321
Max annot lvl2759|Eukaryota
KEGG koko:K04078
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.55e-23
EggNOG OGsCOG0234@1|root,KOG1641@2759|Eukaryota
Descriptionchaperone cofactor-dependent protein refolding
Cds size312
COG categoryO
BRITEko00000,ko03029,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870299.7001522-CDS-A-nodosum_M_contig8856:6621..68011680870299.7001522-CDS-A-nodosum_M_contig8856:6621..6801Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8856 6622..6801 -
1680870299.7174034-CDS-A-nodosum_M_contig8856:7452..75841680870299.7174034-CDS-A-nodosum_M_contig8856:7452..7584Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8856 7453..7584 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870299.7284145-UTR-A-nodosum_M_contig8856:7584..75931680870299.7284145-UTR-A-nodosum_M_contig8856:7584..7593Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8856 7585..7593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8856.3.1prot_A-nodosum_M_contig8856.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8856 6622..7584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8856.3.1

>prot_A-nodosum_M_contig8856.3.1 ID=prot_A-nodosum_M_contig8856.3.1|Name=mRNA_A-nodosum_M_contig8856.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=104bp
MSSLAITLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPC
EGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKVREENIVVKAL
SLTG
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mRNA from alignment at A-nodosum_M_contig8856:6622..7593-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8856.3.1 ID=mRNA_A-nodosum_M_contig8856.3.1|Name=mRNA_A-nodosum_M_contig8856.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=972bp|location=Sequence derived from alignment at A-nodosum_M_contig8856:6622..7593- (Ascophyllum nodosum dioecious)
AGAACGTGCATGTCCTCCTTGGCGATTACCCTTGACGACGAGGTGATCGA CAAGCCGCTCCAGCCCGTGAGCAACTACATTCTGGTGAAGATGTTTCCCG CGATTTCAAGAACTGCGGGAGGCATCGTTCTCCCGGATGAGGTCAGGTCA TGAATATATTGTATAATGTACACTGTACAGGGTACTATGTGGTGCTGAGA AATAGTAGAAGTAAGAGGCTTTTAGAGAAGCGATTACATCGAGCGGACAA GGAACCATGCTGTGCCTCGTGCGTTTAGCGTCACTCCGTAATTCCACGTG GCGCGATACAGGTTTGGCAGGTGTGGCTTGAAGTTGGTGGGCACTGATTT GTTGAGTATAGTCGTAAGGCGTTGCCTTCAGTGGACTCAACAACGATTGG TTGTCTCTGGTCACTCCACCCCACCTCATCCTCTCCCGCTTGATGGGACC CTGACGTACATCCCTAGCTGCTGCAAAGACAGCAAGACATCGATCGTTTG GTGTCCGCATCTTCAGTTTCCAACTCGACTGCTTTCACGGCAGGGCGACG TTCCGCTCAATCAGCGCTCGGTGGCGTCGTATCCGATTCGCCAAAGGGCG CATGATGCAACAGCGCCATCGCTCACCCAACCGGCTTCTCGTCCTTCTCA TTTCCAGCGACAAACGGGCGGGAACAGGCGCTGTCTGAAACGGCGCTGCT CGTCCCCGCGCTGCTCGCATAGCCTGCTTGATATCGCTCACAAACTCTCC ACTCGCGCGGCGGGTCTTTTTTTCCTGCGGTGTGTGGGACAGGCGCAAGA CGTGCCCTGCGAAGGAAGCGTGGTCGCGGCGGGGCCCGGCCGAACGCACC CGCTGACCGGAACGCTCATCCCCATGTGTGTCTCCGAGGGGGATACCGTT CTGTTCTCGAGATTTAGCGGCCGAAAGGTGAGAGAAGAGAATATTGTAGT AAAGGCGCTGTCGCTCACTGGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8856:6622..7593-

>mRNA_A-nodosum_M_contig8856.3.1 ID=mRNA_A-nodosum_M_contig8856.3.1|Name=mRNA_A-nodosum_M_contig8856.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at A-nodosum_M_contig8856:6622..7593- (Ascophyllum nodosum dioecious)
ATGTCCTCCTTGGCGATTACCCTTGACGACGAGGTGATCGACAAGCCGCT
CCAGCCCGTGAGCAACTACATTCTGGTGAAGATGTTTCCCGCGATTTCAA
GAACTGCGGGAGGCATCGTTCTCCCGGATGAGGCGCAAGACGTGCCCTGC
GAAGGAAGCGTGGTCGCGGCGGGGCCCGGCCGAACGCACCCGCTGACCGG
AACGCTCATCCCCATGTGTGTCTCCGAGGGGGATACCGTTCTGTTCTCGA
GATTTAGCGGCCGAAAGGTGAGAGAAGAGAATATTGTAGTAAAGGCGCTG
TCGCTCACTGGT
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