mRNA_A-nodosum_M_contig8856.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig8856.1.1 vs. uniprot
Match: D7G6K9_ECTSI (Chaperonin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K9_ECTSI) HSP 1 Score: 212 bits (540), Expect = 6.060e-61 Identity = 104/126 (82.54%), Postives = 112/126 (88.89%), Query Frame = 3
Query: 3 VKYCGEEHMFIQDDDLVLVYRGPEITEESLKMVRDQVLVVTEKGESETDGGIVISAKAAEKDKASQGRVVAVGEGRTTSVGTIAECPFKPGDCVKFLEYAPTEIKIKGKFYAVVRMVDCIARWEGN 380
VKYCGE+HMFI DDDLVLVYRGPE+TE+SLKMVRDQVLVVTEKGESETD GIVI+A AEK+KASQGRVVA+GEGRT S G I CPFK GD VKF+EYAP EIKIKG +YAVVRMVDCIARWEG
Sbjct: 150 VKYCGEDHMFIMDDDLVLVYRGPELTEDSLKMVRDQVLVVTEKGESETDAGIVIAASTAEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYAPVEIKIKGSYYAVVRMVDCIARWEGE 275
BLAST of mRNA_A-nodosum_M_contig8856.1.1 vs. uniprot
Match: A0A7S1UQU6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UQU6_9STRA) HSP 1 Score: 106 bits (265), Expect = 6.170e-22 Identity = 57/121 (47.11%), Postives = 80/121 (66.12%), Query Frame = 3
Query: 3 VKYCGEEHMFIQDDDLVLVYRGPEITEESLKMVRDQVLVVTEKGESETDGGIVISAKAAEKDKASQGRVVAVGEGRTTSVGTIAECPFKPGDCVKFLEYAPTEIKIKGKFYAVVRMVDCIA 365
+KY EE I+DDD++L Y G +T ++++ RD VLV E+ + ET GIVI+A +D +QG V VGEGR TS G +E P +PGD VKF +YA E++I GK Y++V+MVD +A
Sbjct: 167 IKYNDEECQMIRDDDVLLFYEGAAMTLDNVQPCRDYVLVELEEEDLETASGIVIAATVTSEDIPNQGIVAKVGEGRLTSSGKFSESPVQPGDMVKFKDYAGNEVRIDGKPYSLVKMVDILA 287
BLAST of mRNA_A-nodosum_M_contig8856.1.1 vs. uniprot
Match: A0A8J2WID0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WID0_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 5.460e-20 Identity = 52/124 (41.94%), Postives = 76/124 (61.29%), Query Frame = 3
Query: 3 VKYCGEEHMFIQDDDLVLVYRGP-EITEESLKMVRDQVLVVTEKGESETDGGIVISAKAAEKDKASQGRVVAVGEGRTTSVGTIAECPFKPGDCVKFLEYAPTEIKIKGKFYAVVRMVDCIARW 371
VKYCGE+H I+DDD++L + G +T +K V D VLV K E ET GI ++A +E+ + + G VV G GR + G P + G+ VKF +YA +I++ G+ Y VVR+ DC+A+W
Sbjct: 115 VKYCGEDHQLIKDDDILLSWAGDASMTLGEVKCVADNVLVQVTKVEEETASGIALAAGVSEQTRTTSGVVVKTGTGRVAADGASVPVPVEVGESVKFKDYAGADIRLDGEDYIVVRVPDCLAKW 238
BLAST of mRNA_A-nodosum_M_contig8856.1.1 vs. uniprot
Match: W7TNB8_9STRA (20 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB8_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 9.780e-20 Identity = 51/123 (41.46%), Postives = 82/123 (66.67%), Query Frame = 3
Query: 3 VKYCGEEHMFIQDDDLVLVYRGPEITEESLKMVRDQVLVVTEKGESETDGGIVISAKAAEKDKASQGRVVAVGEGRTTSVGTIAECPFKPGDCVKFLEYAPTEIKIKGKFYAVVRMVDCIARW 371
V Y G H+ I+DDD++L + G +T ++++ VRD++LV +K + ++ GGI++ A + K + ++G V+ VG GR S G +A+ KPGD VKF ++A TEIKI+ + Y V+ VD +ARW
Sbjct: 132 VIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILL-APSMTKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
BLAST of mRNA_A-nodosum_M_contig8856.1.1 vs. uniprot
Match: A0A7S2LFS4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LFS4_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 5.870e-18 Identity = 52/120 (43.33%), Postives = 74/120 (61.67%), Query Frame = 3
Query: 3 VKYCGEEHMFIQDDDLVLVYRGPEITEESLKMVRDQVLVVTEKGESETDGGIVISAKAAEKDKASQGRVVAVGEGRTTSVGTIAECPFKPGDCVKFLEYAPTEIKIKGKFYAVVRMVDCI 362
+ Y E I+DDD++L Y+G +T ++ RD VLV EK ++ET GIV++ + +G+V VGEGR TS G + P K GD VKF +YA E+KI+GK Y++VRMVD +
Sbjct: 134 MNYNEEPVTMIRDDDVLLYYKGVRMTLANVIPCRDYVLVAIEKQKTETSSGIVVAETVMKGYNPCEGKVAKVGEGRMTSTGEFSTPPCKEGDFVKFRDYAGNEVKIEGKEYSLVRMVDIL 253
BLAST of mRNA_A-nodosum_M_contig8856.1.1 vs. uniprot
Match: A0A7S2S5W6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S5W6_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 8.800e-16 Identity = 47/118 (39.83%), Postives = 69/118 (58.47%), Query Frame = 3
Query: 9 YCGEEHMFIQDDDLVLVYRGPEITEESLKMVRDQVLVVTEKGESETDGGIVISAKAAEKDKASQGRVVAVGEGRTTSVGTIAECPFKPGDCVKFLEYAPTEIKIKGKFYAVVRMVDCI 362
Y E I+DDD++L Y G ++T +++ RD VLV + ET GIV++A + D +G V VGEGR S G P + G+ VKF +YA ++KI GK Y++VRMV+ +
Sbjct: 63 YNEEPMTMIRDDDVMLYYEGVQMTRDNVVPCRDFVLVELSESAMETKSGIVVAASVTKDDLPCEGNVFKVGEGRMCSTGEFTPSPVQIGEKVKFKDYAGNDVKIDGKEYSLVRMVELL 180
BLAST of mRNA_A-nodosum_M_contig8856.1.1 vs. uniprot
Match: A0A3C0KSD2_9DELT (Co-chaperonin GroES n=1 Tax=Syntrophus sp. (in: Bacteria) TaxID=48412 RepID=A0A3C0KSD2_9DELT) HSP 1 Score: 68.6 bits (166), Expect = 1.230e-10 Identity = 38/97 (39.18%), Postives = 60/97 (61.86%), Query Frame = 3
Query: 90 LKMVRDQVLVVTEKGESETDGGIVISAKAAEKDKASQGRVVAVGEGRTTSVGTIAECPFKPGDCVKFLEYAPTEIKIKGKFYAVVRMVDCIARWEGN 380
++ ++D+V+V E +T GGI+I A K+K +G+++AVG+G+TT G + + K GD V F +YA TE+KI GK Y ++R D + EG
Sbjct: 3 IRPLQDRVIVERLAEEGKTKGGIIIPDTA--KEKPMEGKIIAVGKGKTTEDGKLVKLDVKAGDKVLFSKYAGTEVKIDGKEYLIMREDDILGVIEGK 97
BLAST of mRNA_A-nodosum_M_contig8856.1.1 vs. uniprot
Match: A0A2N1VFR5_9BACT (Co-chaperonin GroES n=1 Tax=Ignavibacteriae bacterium HGW-Ignavibacteriae-3 TaxID=2013810 RepID=A0A2N1VFR5_9BACT) HSP 1 Score: 65.5 bits (158), Expect = 1.530e-9 Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 3
Query: 90 LKMVRDQVLVVTEKGESETDGGIVISAKAAEKDKASQGRVVAVGEGRTTSVGTIAECPFKPGDCVKFLEYAPTEIKIKGKFYAVVRMVD 356
+K + D+V+V ++ E T GGI++ A K+K +G++VAVGEG+TT G + + K GD V + +Y+ TEIKI G+ Y ++R D
Sbjct: 6 IKPLGDRVIVKAKEAEETTKGGIILPDTA--KEKPIEGKIVAVGEGKTTDDGKLIKLTLKVGDVVLYGKYSGTEIKIDGEEYLIMRESD 92
BLAST of mRNA_A-nodosum_M_contig8856.1.1 vs. uniprot
Match: A0A7C4W9M0_9DELT (Co-chaperonin GroES n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C4W9M0_9DELT) HSP 1 Score: 63.9 bits (154), Expect = 4.910e-9 Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 3
Query: 90 LKMVRDQVLVVTEKGESETDGGIVISAKAAEKDKASQGRVVAVGEGRTTSVGTIAECPFKPGDCVKFLEYAPTEIKIKGKFYAVVRMVDCIA 365
++ + D++LV + E +T GGI+I A K+K S+GRV+AVG+GR GT K GD + F +YA TE+KI G+ + ++R D +A
Sbjct: 3 VRPLHDRILVKRLEEEEKTKGGIIIPDTA--KEKPSEGRVIAVGDGRIKEDGTKIPMELKKGDRILFSKYAGTEVKIDGEDHLIMREDDVLA 92
BLAST of mRNA_A-nodosum_M_contig8856.1.1 vs. uniprot
Match: A0A4Q6FR31_9PROT (Co-chaperonin GroES n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6FR31_9PROT) HSP 1 Score: 63.2 bits (152), Expect = 9.170e-9 Identity = 35/91 (38.46%), Postives = 58/91 (63.74%), Query Frame = 3
Query: 90 LKMVRDQVLVVTEKGESETDGGIVISAKAAEKDKASQGRVVAVGEGRTTSVGTIAECPFKPGDCVKFLEYAPTEIKIKGKFYAVVRMVDCI 362
++ ++D++LV + E +T GI+I A K+K +GRVVAVG GRT GT+ + K GD V F +Y+ TE+K++G+ + ++R D +
Sbjct: 3 IRPLQDRILVKRVEAEQKTASGIIIPDAA--KEKPVEGRVVAVGNGRTLDNGTVQKPDVKSGDTVLFGKYSGTEVKVEGEEFLILREDDIL 91 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8856.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig8856.1.1 >prot_A-nodosum_M_contig8856.1.1 ID=prot_A-nodosum_M_contig8856.1.1|Name=mRNA_A-nodosum_M_contig8856.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=121bp MFIQDDDLVLVYRGPEITEESLKMVRDQVLVVTEKGESETDGGIVISAKAback to top mRNA from alignment at A-nodosum_M_contig8856:1058..5925- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig8856.1.1 ID=mRNA_A-nodosum_M_contig8856.1.1|Name=mRNA_A-nodosum_M_contig8856.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4868bp|location=Sequence derived from alignment at A-nodosum_M_contig8856:1058..5925- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig8856:1058..5925- >mRNA_A-nodosum_M_contig8856.1.1 ID=mRNA_A-nodosum_M_contig8856.1.1|Name=mRNA_A-nodosum_M_contig8856.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=363bp|location=Sequence derived from alignment at A-nodosum_M_contig8856:1058..5925- (Ascophyllum nodosum dioecious)back to top |