mRNA_A-nodosum_M_contig876.24.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig876.24.1
Unique NamemRNA_A-nodosum_M_contig876.24.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig876.24.1 vs. uniprot
Match: A0A6H5L5T7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5T7_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 7.420e-25
Identity = 73/172 (42.44%), Postives = 98/172 (56.98%), Query Frame = 3 
Query:  687 LKRMRIAEKVTAAEAIRLQREADPSVLIRRFLRCSGLPLDHIFAASVRIYTRSRLRSGFLKWRVSSAAETQRHHHRMKAIAALQAFLRLSIAHRTAAQHPLEHGPATRRSCGVIQNAFRKHLARRSVLACITRIDQHELEESTKTEQEMDTLEAENRRRSEACKVIQTAWRG 1202
            L+R+R  E++ A E +RL+READP V+IRRF R SGLPLDHIFA +  +Y RSRLR+    W   + AET   ++R++A   +Q   R+ IA  TA +     GPA   +  +IQ  FR   AR  V      + Q   +E  K     +T + E RRR +A  VIQ AWRG
Sbjct:    4 LQRIRADEQIMAEEVVRLRREADPRVMIRRFWRSSGLPLDHIFATAAGVYRRSRLRTALSTWHSVAKAETHHINYRIEAAEVIQRATRVFIARHTAERRRRVRGPAVLAASRMIQAEFRSRKAR--VKTADVAVRQQNRQELRKRYWCDETAKDEQRRR-DASTVIQAAWRG 172
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig876.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5T7_9PHAE7.420e-2542.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig876contigA-nodosum_M_contig876:209489..211175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1203
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_003450.1
Cds size1053
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870277.9047658-UTR-A-nodosum_M_contig876:209488..2096371680870277.9047658-UTR-A-nodosum_M_contig876:209488..209637Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig876 209489..209637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870277.9223764-CDS-A-nodosum_M_contig876:209637..2102811680870277.9223764-CDS-A-nodosum_M_contig876:209637..210281Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig876 209638..210281 +
1680870277.9325657-CDS-A-nodosum_M_contig876:210766..2111751680870277.9325657-CDS-A-nodosum_M_contig876:210766..211175Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig876 210767..211175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig876.24.1prot_A-nodosum_M_contig876.24.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig876 209638..211175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig876.24.1

>prot_A-nodosum_M_contig876.24.1 ID=prot_A-nodosum_M_contig876.24.1|Name=mRNA_A-nodosum_M_contig876.24.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=351bp
MDQKTECDQGVLFGGDCERRIFYPTTPHKVHVDLEGGRQRSANPLAALRL
TPSSPYVGLRIAATVSTPNEHGKVVSRSKFRDHQEEQRSTELYACQQETA
AELSPRRSTSLRGRVSTSPPRKYINSSAQQITNGSVFSSQWSERYGVAGR
SHNIRILRDDNLAISSRCEEDNNRPINTQLKRMRIAEKVTAAEAIRLQRE
ADPSVLIRRFLRCSGLPLDHIFAASVRIYTRSRLRSGFLKWRVSSAAETQ
RHHHRMKAIAALQAFLRLSIAHRTAAQHPLEHGPATRRSCGVIQNAFRKH
LARRSVLACITRIDQHELEESTKTEQEMDTLEAENRRRSEACKVIQTAWR
G
back to top

mRNA from alignment at A-nodosum_M_contig876:209489..211175+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig876.24.1 ID=mRNA_A-nodosum_M_contig876.24.1|Name=mRNA_A-nodosum_M_contig876.24.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1687bp|location=Sequence derived from alignment at A-nodosum_M_contig876:209489..211175+ (Ascophyllum nodosum dioecious)
TTGTCGTTGATTGTACCCAGCAGGCAGGAGAGTTTCACGAAACTGTCGAG
TTTTTAGTCCGGTAAGAGTAGTACTACTACAGCTGTTGTCGTACTCAGGT
ACATAACGCGTCGAGAGAAGAAGTCGAATCGGCAGGTTGTGGGCAGGCGA
TGGACCAGAAAACCGAATGCGATCAAGGAGTACTGTTCGGCGGCGACTGT
GAAAGACGGATCTTCTACCCAACAACACCTCACAAGGTCCATGTCGACCT
TGAGGGAGGGCGGCAGCGTTCAGCCAATCCTCTGGCTGCCCTGAGGCTGA
CACCATCGTCTCCATACGTGGGCCTCAGAATCGCAGCCACAGTTTCCACG
CCGAATGAGCATGGTAAGGTGGTAAGCCGTTCGAAATTTCGAGATCATCA
GGAGGAGCAGCGCTCGACCGAGCTGTACGCTTGCCAACAGGAAACGGCCG
CAGAGTTGAGTCCCAGGCGATCGACCTCGTTGCGCGGACGAGTTTCCACC
AGTCCGCCGAGAAAATATATTAATAGTTCGGCGCAGCAGATAACAAACGG
TAGTGTTTTCTCGTCGCAATGGTCGGAGCGATATGGTGTGGCTGGTCGAA
GTCACAACATACGGATATTGCGCGACGATAATCTGGCCATCAGTAGTCGC
TGCGAAGAAGACAATAATCGGCCGATAAACACCCAGCTCAAGCGAATGAG
AATTGCTGAGAAGGTGACAGCTGCTGAAGCAATCCGGCTTCAACGCGAGG
CAGATCCGAGCGTCCTCATTCGGCGCTTTTTGCGCTGTTCCGGGTGAGGG
AGGGTTTCCTTACGGGGGCTTCCTTAGATTGAATTGTGGTGTCCTCATGG
TCAGGCATGAAGAGTGCCACCAAAATCAGAGCTAGAACTACAGCTATTGT
TACAGCTCGTGCTTACAATGTATCGTACGAGTGATATTTCATCAATAAGT
GTGATCAAGCATGCTCCAAGACAGGCTCATTTCGTATAATAAAAGGCGGA
CCGCACATTGATGTACATCACCATTTCAACAGTAACTCACCCCTAACCCC
TTAACAACCAAACCATTCAGTACCGCGAAAAATGCTGTCAACAATCAACG
AACAACATCCTCGACATAAAAACTTGACACCATGTCTACCGCATCGAAAC
GCGTGTTTCAAATTATGCGATAACTTTTTTTTTAACCACGCACAGGTTAC
TAATTTGTCAACGTCCCTGCTCTTCCTTTCGCCTTGCCTTCGTGCGCCAC
ATACGCCTCCAAACCATCTATCGCGAAGCCTACCGCTTGACCACATCTTC
GCCGCTTCGGTAAGAATCTACACACGCTCGCGCCTCCGGTCCGGGTTTTT
GAAGTGGCGCGTATCCAGCGCCGCGGAGACCCAGCGTCACCATCATCGCA
TGAAGGCCATCGCTGCCCTCCAAGCCTTCCTCCGTCTATCTATCGCTCAT
CGAACGGCCGCCCAACACCCCCTGGAGCACGGTCCTGCCACGAGGCGATC
TTGTGGCGTCATTCAGAACGCTTTTCGCAAGCACCTCGCGCGTCGATCAG
TGCTGGCATGCATCACTCGCATCGATCAGCACGAGCTTGAAGAAAGTACT
AAGACGGAGCAAGAAATGGATACGCTCGAGGCCGAGAACCGTCGCCGATC
GGAGGCGTGCAAGGTGATACAGACGGCTTGGAGGGGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig876:209489..211175+

>mRNA_A-nodosum_M_contig876.24.1 ID=mRNA_A-nodosum_M_contig876.24.1|Name=mRNA_A-nodosum_M_contig876.24.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1053bp|location=Sequence derived from alignment at A-nodosum_M_contig876:209489..211175+ (Ascophyllum nodosum dioecious)
ATGGACCAGAAAACCGAATGCGATCAAGGAGTACTGTTCGGCGGCGACTG
TGAAAGACGGATCTTCTACCCAACAACACCTCACAAGGTCCATGTCGACC
TTGAGGGAGGGCGGCAGCGTTCAGCCAATCCTCTGGCTGCCCTGAGGCTG
ACACCATCGTCTCCATACGTGGGCCTCAGAATCGCAGCCACAGTTTCCAC
GCCGAATGAGCATGGTAAGGTGGTAAGCCGTTCGAAATTTCGAGATCATC
AGGAGGAGCAGCGCTCGACCGAGCTGTACGCTTGCCAACAGGAAACGGCC
GCAGAGTTGAGTCCCAGGCGATCGACCTCGTTGCGCGGACGAGTTTCCAC
CAGTCCGCCGAGAAAATATATTAATAGTTCGGCGCAGCAGATAACAAACG
GTAGTGTTTTCTCGTCGCAATGGTCGGAGCGATATGGTGTGGCTGGTCGA
AGTCACAACATACGGATATTGCGCGACGATAATCTGGCCATCAGTAGTCG
CTGCGAAGAAGACAATAATCGGCCGATAAACACCCAGCTCAAGCGAATGA
GAATTGCTGAGAAGGTGACAGCTGCTGAAGCAATCCGGCTTCAACGCGAG
GCAGATCCGAGCGTCCTCATTCGGCGCTTTTTGCGCTGTTCCGGCCTACC
GCTTGACCACATCTTCGCCGCTTCGGTAAGAATCTACACACGCTCGCGCC
TCCGGTCCGGGTTTTTGAAGTGGCGCGTATCCAGCGCCGCGGAGACCCAG
CGTCACCATCATCGCATGAAGGCCATCGCTGCCCTCCAAGCCTTCCTCCG
TCTATCTATCGCTCATCGAACGGCCGCCCAACACCCCCTGGAGCACGGTC
CTGCCACGAGGCGATCTTGTGGCGTCATTCAGAACGCTTTTCGCAAGCAC
CTCGCGCGTCGATCAGTGCTGGCATGCATCACTCGCATCGATCAGCACGA
GCTTGAAGAAAGTACTAAGACGGAGCAAGAAATGGATACGCTCGAGGCCG
AGAACCGTCGCCGATCGGAGGCGTGCAAGGTGATACAGACGGCTTGGAGG
GGG
back to top