mRNA_A-nodosum_M_contig849.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig849.4.1
Unique NamemRNA_A-nodosum_M_contig849.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig849.4.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.410e-20
Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 GMEQCRADQCVYRKIVEGVVKLTLVVHVDGIVVSGEKEACEELHHTLNENFPTENLGELKWYLGCAVE 204
            G EQC+AD CV+RK+V+ VV + +V++VD I+V+G  E CEEL  +LN+ FPT+NLGE +W+ GCA+E
Sbjct:   51 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIE 118
[Close]
BLAST of mRNA_A-nodosum_M_contig849.4.1 vs. uniprot
Match: A0A6H5L663_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L663_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.020e-19
Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 GMEQCRADQCVYRKIVEGVVKLTLVVHVDGIVVSGEKEACEELHHTLNENFPTENLGELKWYLGCAVE 204
            G E C+AD CV+RK+V+GVV + +V++VD I+V+G  E CEEL  +LN+ FPT+NLGE +W+ GCA+E
Sbjct:   43 GFEPCKADPCVFRKMVDGVVVMIVVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIE 110
[Close]
BLAST of mRNA_A-nodosum_M_contig849.4.1 vs. uniprot
Match: A0A6H5K5G1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G1_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.600e-19
Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 GMEQCRADQCVYRKIVEGVVKLTLVVHVDGIVVSGEKEACEELHHTLNENFPTENLGELKWYLGCAVE 204
            G EQC+AD CV+RK+V+ VV + +V++VD I+V+G  E CEEL  +LN+ FPT+NLGE +W+ GCA+E
Sbjct:  312 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIE 379
[Close]
BLAST of mRNA_A-nodosum_M_contig849.4.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.490e-19
Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 GMEQCRADQCVYRKIVEGVVKLTLVVHVDGIVVSGEKEACEELHHTLNENFPTENLGELKWYLGCAVE 204
            G EQC+AD CV+RK+V+ VV + +V++VD I+V+G  E CEEL  +LN+ FPT+NLGE +W+ GCA+E
Sbjct:  130 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIE 197
[Close]
BLAST of mRNA_A-nodosum_M_contig849.4.1 vs. uniprot
Match: A0A6H5KSR8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.490e-19
Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 GMEQCRADQCVYRKIVEGVVKLTLVVHVDGIVVSGEKEACEELHHTLNENFPTENLGELKWYLGCAVE 204
            G EQC+AD CV+RK+V+ VV + +V++VD I+V+G  E CEEL  +LN+ FPT+NLGE +W+ GCA+E
Sbjct:   74 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIE 141
[Close]
BLAST of mRNA_A-nodosum_M_contig849.4.1 vs. uniprot
Match: A0A6H5K2J9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.710e-19
Identity = 37/68 (54.41%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 GMEQCRADQCVYRKIVEGVVKLTLVVHVDGIVVSGEKEACEELHHTLNENFPTENLGELKWYLGCAVE 204
            G EQC+AD CV+RK+V+ VV + +V++VD I+V+G  E CEEL  +LN+ FPT+ LGE +W+ GCA+E
Sbjct:   74 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKILGECQWFNGCAME 141
[Close]
BLAST of mRNA_A-nodosum_M_contig849.4.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.920e-19
Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 GMEQCRADQCVYRKIVEGVVKLTLVVHVDGIVVSGEKEACEELHHTLNENFPTENLGELKWYLGCAVE 204
            G EQC+AD CV+RK+V+ VV + +V++VD I+V+G  E CEEL  +LN+ FPT+NLGE +W+ GCA+E
Sbjct:  194 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIE 261
[Close]
BLAST of mRNA_A-nodosum_M_contig849.4.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 4.310e-19
Identity = 36/68 (52.94%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 GMEQCRADQCVYRKIVEGVVKLTLVVHVDGIVVSGEKEACEELHHTLNENFPTENLGELKWYLGCAVE 204
            G EQC+AD CV+RK+V+ VV + +V++VD I+V+G  E CEEL  +LN+ FPT+N GE +W+ GCA++
Sbjct:  126 GFEQCKADPCVFRKMVDEVVVMVIVIYVDDILVAGSDEDCEELLASLNKKFPTKNRGEYEWFDGCAID 193
[Close]
BLAST of mRNA_A-nodosum_M_contig849.4.1 vs. uniprot
Match: A0A6H5JUB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 4.340e-19
Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 GMEQCRADQCVYRKIVEGVVKLTLVVHVDGIVVSGEKEACEELHHTLNENFPTENLGELKWYLGCAVE 204
            G EQC+AD CV+RK+V+ VV + +V++VD I+V+G  E CEEL  +LN+ FPT+NLGE +W+ GCA+E
Sbjct:  416 GFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIE 483
[Close]
BLAST of mRNA_A-nodosum_M_contig849.4.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 4.420e-19
Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 GMEQCRADQCVYRKIVEGVVKLTLVVHVDGIVVSGEKEACEELHHTLNENFPTENLGELKWYLGCAVE 204
            G EQC+AD CV+RK+V+ VV + +V++VD I+V+G  E CEEL  +LN+ FPT+NLGE +W+ GCA+E
Sbjct:  542 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIE 609
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig849.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRS6_9PHAE2.410e-2055.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L663_9PHAE1.020e-1955.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K5G1_9PHAE2.600e-1955.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVD4_9PHAE3.490e-1955.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSR8_9PHAE3.490e-1955.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2J9_9PHAE3.710e-1954.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE3.920e-1955.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JIS9_9PHAE4.310e-1952.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUB8_9PHAE4.340e-1955.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K164_9PHAE4.420e-1955.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig849contigA-nodosum_M_contig849:92261..92464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog160860.XP_007358330.1
PFAMsDUF4219,RVT_2,Retrotran_gag_2,rve
Model size206
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.33e-05
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,22B2X@155619|Agaricomycetes,3H6HR@355688|Agaricomycetes incertae sedis
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size201
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870224.4936104-CDS-A-nodosum_M_contig849:92260..924611680870224.4936104-CDS-A-nodosum_M_contig849:92260..92461Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig849 92261..92461 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870224.5085385-UTR-A-nodosum_M_contig849:92461..924641680870224.5085385-UTR-A-nodosum_M_contig849:92461..92464Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig849 92462..92464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig849.4.1prot_A-nodosum_M_contig849.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig849 92261..92461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig849.4.1

>prot_A-nodosum_M_contig849.4.1 ID=prot_A-nodosum_M_contig849.4.1|Name=mRNA_A-nodosum_M_contig849.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=67bp
MEQCRADQCVYRKIVEGVVKLTLVVHVDGIVVSGEKEACEELHHTLNENF
PTENLGELKWYLGCAVE
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mRNA from alignment at A-nodosum_M_contig849:92261..92464-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig849.4.1 ID=mRNA_A-nodosum_M_contig849.4.1|Name=mRNA_A-nodosum_M_contig849.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at A-nodosum_M_contig849:92261..92464- (Ascophyllum nodosum dioecious)
GGTATGGAGCAGTGCCGGGCTGATCAGTGTGTGTACAGGAAGATTGTGGA
AGGAGTGGTGAAGTTGACACTTGTAGTACACGTAGACGGTATTGTAGTCA
GTGGGGAGAAGGAGGCGTGTGAGGAGCTACACCATACTCTAAACGAAAAT
TTCCCGACCGAAAATCTCGGGGAGTTGAAGTGGTATCTGGGGTGCGCTGT
GGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig849:92261..92464-

>mRNA_A-nodosum_M_contig849.4.1 ID=mRNA_A-nodosum_M_contig849.4.1|Name=mRNA_A-nodosum_M_contig849.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=201bp|location=Sequence derived from alignment at A-nodosum_M_contig849:92261..92464- (Ascophyllum nodosum dioecious)
ATGGAGCAGTGCCGGGCTGATCAGTGTGTGTACAGGAAGATTGTGGAAGG
AGTGGTGAAGTTGACACTTGTAGTACACGTAGACGGTATTGTAGTCAGTG
GGGAGAAGGAGGCGTGTGAGGAGCTACACCATACTCTAAACGAAAATTTC
CCGACCGAAAATCTCGGGGAGTTGAAGTGGTATCTGGGGTGCGCTGTGGA
G
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