prot_A-nodosum_M_contig83.60.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig83.60.1
Unique Nameprot_A-nodosum_M_contig83.60.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length229
Homology
BLAST of mRNA_A-nodosum_M_contig83.60.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 1.450e-83
Identity = 137/228 (60.09%), Postives = 164/228 (71.93%), Query Frame = 0
Query:    2 LDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPPTELPGSLVGLLEDASLTFTGVGINADCTRIEKFFGVKVAHAVDLAKLALIRKVPLGLKRGLADLCYHLLGRSLSKDGRVRFSRWNRKDLSEKQKTYAALDAYVSTVLYSCIEEKSDPIFKDGEDLQAGDHVRLYTRTGNACVGVGVVKEYEGQVWGRTGIHLVPAMTTRARVRRWIVRVDEVLMPGA 229
            LDIEW+I+ +GA  NPPAT QLAAGK V++  +LHGQ++ P ELP  LV LLED  LT TGVGI  DCTR+  F+GV+VAHAVDL  LA+ RKV LGL+RGLADLC HLLG+ L KD  VR S+WN+ DLS+ QK YAALDAY   +L+  I E SD IF+D E+L  GD VRLYTR GN CVG G + E+  + WG TG +LVP   TR   RRW VR+D V +P A
Sbjct:  256 LDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQKRYAALDAYACLLLHGRIGELSDSIFRDAEELHVGDRVRLYTRAGNDCVGEGCIVEHTDETWGTTGFYLVPRRATRRFARRWAVRLDRVHVPRA 483          
BLAST of mRNA_A-nodosum_M_contig83.60.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 5.300e-30
Identity = 89/239 (37.24%), Postives = 129/239 (53.97%), Query Frame = 0
Query:    1 GLDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHG--QKTPPTELPGSLVGLLEDASLTFTGVGINADCTRIEKFFGVKVAHAVDLAKLALIRKVPLGLKRGLADLCYHLLGRSLSKDGRVRFSRWNRKDLSEKQKTYAALDAYVSTVLYSCIEEKSDPIF-KDGEDLQ-AGDHVRLYTRTGNACVGVGVVKEYEG-----QVWGRTGIHLVPAMTTRAR-VRRWIVRVDEVLMPGA 229
            G+D EW+    G+ E    T QLA       L  L    ++T P+    SL  LL D ++T  GV +  D +R+++ +GV+    VDL   A    V L   R LA +    LG+SLSK+  VRFSRW++ +L++ Q  YA LDAY + VL++ I +  DPIF     D+  AG  VRLYT    +CVGVG V++ E      + WG T + L     TR+  ++R +V+V +VL P +
Sbjct:   91 GMDCEWEPPFDGSSEGAVCTLQLALPDGTAYLFHLQRGTRRTRPSTFNRSLKVLLNDPTITKVGVAVKGDGSRLQRDYGVETCGMVDLRSYARTCWVDLPC-RSLAGMVATALGKSLSKNPSVRFSRWSQAELTQNQVNYACLDAYAAVVLHAEIGKSKDPIFCMAPSDIPIAGTEVRLYTNNHESCVGVGQVQDEEAARSLVEKWG-TDLKLAQREGTRSGGLKRVVVKVVDVLKPAS 327          
BLAST of mRNA_A-nodosum_M_contig83.60.1 vs. uniprot
Match: UPI00053FA13A (Werner Syndrome-like exonuclease n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FA13A)

HSP 1 Score: 86.7 bits (213), Expect = 2.400e-17
Identity = 58/158 (36.71%), Postives = 80/158 (50.63%), Query Frame = 0
Query:    1 GLDIEWDIALSGAH--ENPPATFQLAAGKFVLVLQILHGQKTPPTELPGSLVGLLEDASLTFTGVGINADCTRIEKFFGVKVAHAVDLAKLALIR--KVPLGLKRGLADLCYHLLGRSLSKDGRVRFSRWNRKDLSEKQKTYAALDAYVSTVLYSCIE 154
            GLDIEW       H   NP +  QL  G   LV Q+ H        +P SL   L D   TF GVGI+ D  ++   + ++V++ VDL  LA IR  +  LG   GL  L   +LG   +K   +  S W  + LSE QK YAA+DA++S  +  C++
Sbjct:   44 GLDIEWLPNFYNRHPSRNPISVLQLCVGHHCLVFQLQHA-----CYIPQSLHNFLSDDDYTFVGVGIDDDVQKLYYDYDLEVSNTVDLRTLASIRYDQPTLG-NTGLVKLAEMVLGLQYNKPRDITISNWTNRYLSETQKEYAAIDAFLSFEIGKCLD 195          
BLAST of mRNA_A-nodosum_M_contig83.60.1 vs. uniprot
Match: A0A200R224_9MAGN (3'-5' exonuclease domain n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200R224_9MAGN)

HSP 1 Score: 80.9 bits (198), Expect = 4.640e-15
Identity = 56/159 (35.22%), Postives = 89/159 (55.97%), Query Frame = 0
Query:    1 GLDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPPTELPGSLVGLLEDASLTFTGVGINADCTRIEKFFGVKVAHAVDLAKLALIRKVPLGLKR----GLADLCYHLLGRSLSKDGRVRFSRWNRKDLSEKQKTYAALDAYVSTVLYSCIEE 155
            GLDIEW+ + S  + +  AT QL  G   +++Q+LH        +P +L  LL D S++F GVGI  D +++E  +G++    ++L +LA   KV LG ++    GL +L   ++G S+ K      S W  K+L+ +Q  YA +DAY S V+ S + E
Sbjct:   59 GLDIEWN-SNSNDNNDKVATLQLCYGDRCIIIQLLHLDL-----IPFALSTLLIDQSISFVGVGITEDLSKLECDYGLESVPGIELGQLA--DKV-LGKQQFSGSGLVELACEIVGLSIEKPASASCSDWGLKNLTSEQIKYATIDAYASFVIGSKLLE 208          
BLAST of mRNA_A-nodosum_M_contig83.60.1 vs. uniprot
Match: A0A2T7DH33_9POAL (3'-5' exonuclease domain-containing protein n=1 Tax=Panicum hallii var. hallii TaxID=1504633 RepID=A0A2T7DH33_9POAL)

HSP 1 Score: 80.9 bits (198), Expect = 1.100e-14
Identity = 55/147 (37.41%), Postives = 71/147 (48.30%), Query Frame = 0
Query:    1 GLDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPPTELPGSLVGLLEDASLTFTGVGINADCTRIEKFFGVKVAHAVDLAKLAL-IRKVPLGLKRGLADLCYHLLGRSLSKDGRVRFSRWNRKDLSEKQKTYAALDAYVS 146
            GLD+EW  A   A   P A  Q+      LV QIL         +PG L   L D   TF GVGI  D  ++   +G++VA AVDL +LA      P  L+ GL  L   ++G  + K   VR S W+   LS+ Q  YA  DA+ S
Sbjct:  111 GLDVEWRPA-GRAPPGPVAVLQVCVDHRCLVFQILRADY-----VPGKLSAFLADRRFTFVGVGIRDDAAKLRAGYGLRVASAVDLRRLAADALGRPDLLRAGLQALVLEVMGVQMEKPHHVRVSAWDAAALSDDQLKYACADAFAS 251          
BLAST of mRNA_A-nodosum_M_contig83.60.1 vs. uniprot
Match: A0A1E5VPQ2_9POAL (3'-5' exonuclease domain-containing protein n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5VPQ2_9POAL)

HSP 1 Score: 81.6 bits (200), Expect = 2.550e-14
Identity = 49/134 (36.57%), Postives = 72/134 (53.73%), Query Frame = 0
Query:   14 HENPPATFQLAAGKFVLVLQILHGQKTPPTELPGSLVGLLEDASLTFTGVGINADCTRIEKFFGVKVAHAVDLAKLALIRKVPLGLK-RGLADLCYHLLGRSLSKDGRVRFSRWNRKDLSEKQKTYAALDAYVS 146
            H+ P A  QL  G+  LV QIL         +P +LVG L D  +TF GVG++ D  ++ + +G++VA AVDL +LA++      L   GL  L + ++G  + K   VR S W+ + LS+ Q  YA  D   S
Sbjct:  249 HKAPVAVLQLCVGRRCLVFQILRADY-----VPDALVGFLADDRITFVGVGVHNDAAKLREGYGLEVARAVDLRRLAVVELGNPALHGAGLQALVWEVMGLQMEKPHHVRVSAWDARRLSKAQLKYACADDLAS 377          
BLAST of mRNA_A-nodosum_M_contig83.60.1 vs. uniprot
Match: A0A2S3HRX3_9POAL (3'-5' exonuclease domain-containing protein n=2 Tax=Panicum TaxID=4539 RepID=A0A2S3HRX3_9POAL)

HSP 1 Score: 77.0 bits (188), Expect = 1.090e-13
Identity = 54/147 (36.73%), Postives = 69/147 (46.94%), Query Frame = 0
Query:    1 GLDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPPTELPGSLVGLLEDASLTFTGVGINADCTRIEKFFGVKVAHAVDLAKLAL-IRKVPLGLKRGLADLCYHLLGRSLSKDGRVRFSRWNRKDLSEKQKTYAALDAYVS 146
            GLD+EW  A   A   P A  Q+      LV QIL         +P  L   L D   TF GVGI  D  ++   +G++VA AVDL +LA      P  L+ GL  L   ++G  + K   VR S W+   LS  Q  YA  DA+ S
Sbjct:   52 GLDVEWRPA-GRAPPGPVAVLQVCVDHRCLVFQILRADY-----VPAKLSAFLADRRFTFVGVGIRDDAAKLRAGYGLRVASAVDLRRLAADALGRPDLLRAGLQALVLEVMGVQMEKPHHVRVSAWDAAALSYDQLMYACADAFAS 192          
BLAST of mRNA_A-nodosum_M_contig83.60.1 vs. uniprot
Match: A0A6A5V400_9PLEO (Uncharacterized protein n=1 Tax=Bimuria novae-zelandiae CBS 107.79 TaxID=1447943 RepID=A0A6A5V400_9PLEO)

HSP 1 Score: 78.6 bits (192), Expect = 3.610e-13
Identity = 65/170 (38.24%), Postives = 88/170 (51.76%), Query Frame = 0
Query:    1 GLDIEWDIALSGAHENPP-----ATFQLAAGKFVLVLQI-LHGQKTPPTELPGSLVGLLEDASLTFTGVGI-NADCTRIEKFFGVKVAHAVDLAKLALIRKVP------LGLKR-GLADLCYHLLGRSLSKDGRVRFSRWNRKDLSEKQKTYAALDAYVSTVLYSCIEEK 156
            G D+EW + +  + +NPP        Q+A+   V +  I LHG KT    +  SL  L+E  ++  TGV I NAD  R+ K+FG+K   A +L+ L  + K        L  K   LA L    LG  L K G VR S W+ K LS+KQK YAA DAY   +L+ C+  K
Sbjct:   78 GFDMEWPMYIRDS-DNPPLQKRIGLIQVASETTVALFHIGLHGGKTTAEIIAPSLRKLIESPTIAKTGVAIFNADFARLRKYFGLKPQGAFELSHLDHLVKFAHDPYYLLNTKTVALAHLVETHLGLPLGK-GPVRTSNWS-KALSQKQKDYAASDAYAGFMLFHCMNAK 244          
BLAST of mRNA_A-nodosum_M_contig83.60.1 vs. uniprot
Match: A0A4P9XK89_9FUNG (3'-5' exonuclease domain-containing protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XK89_9FUNG)

HSP 1 Score: 77.0 bits (188), Expect = 1.040e-12
Identity = 55/142 (38.73%), Postives = 76/142 (53.52%), Query Frame = 0
Query:   27 KFVLVLQILHGQKTPPTELPGSLVGLLEDASLTFTGVGINADCTRIEKFFGVKVAHAVDLAKLALIRKVPL-GLKRG-LADLCYHLLGRSLSKDGRVRFSRWNRKDLSEKQKTYAALDAYVSTVLYSCIEEKSDPIFKDGED 166
            K + +L + H +       PG+L   LEDASL   GV +  D TR+ + +GVK    V+L   A  R   L G++R  LA L   LLG++L K G VR   W R +L+E+Q+ YAA DAYV   +Y  +E    P+    ED
Sbjct:  149 KTIALLHLFHMES-----FPGALRTFLEDASLHKAGVNVTGDATRLSRDYGVKPVGLVELGVNARQRVSDLAGIRRPTLAMLTEELLGKTLEK-GPVRVGNWERTNLTEEQREYAANDAYVCYKIYRRLEVLKSPLTTVEED 284          
BLAST of mRNA_A-nodosum_M_contig83.60.1 vs. uniprot
Match: A0A7J0H8D5_9ERIC (3'-5' exonuclease domain-containing protein n=2 Tax=Actinidia TaxID=3624 RepID=A0A7J0H8D5_9ERIC)

HSP 1 Score: 73.9 bits (180), Expect = 1.310e-12
Identity = 46/145 (31.72%), Postives = 72/145 (49.66%), Query Frame = 0
Query:    1 GLDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPPTELPGSLVGLLEDASLTFTGVGINADCTRIEKFFGVKVAHAVDLAKLALIR-KVPLGLKRGLADLCYHLLGRSLSKDGRVRFSRWNRKDLSEKQKTYAALDAY 144
            GLD EW   +  +  N   T QL      L+LQ+          +P S+   L D ++TF GV +  D +++   +G+  ++ VD+  LA+ R  V    K GL  L + ++G  ++K   V  S W  + L EKQ  YA++DAY
Sbjct:   44 GLDCEWRTNIISSMNNKTDTLQLCVDTKCLILQMFSMDY-----IPQSIKSFLSDPNVTFVGVEVGDDTSKLRDGYGLSCSNTVDIQALAMERWPVRFYRKPGLKKLAHEVVGLLMAKPMHVCRSNWEARVLDEKQVEYASIDAY 183          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig83.60.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE1.450e-8360.093'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JRJ6_9PHAE5.300e-3037.243'-5' exonuclease domain-containing protein n=1 Ta... [more]
UPI00053FA13A2.400e-1736.71Werner Syndrome-like exonuclease n=1 Tax=Beta vulg... [more]
A0A200R224_9MAGN4.640e-1535.223'-5' exonuclease domain n=1 Tax=Macleaya cordata ... [more]
A0A2T7DH33_9POAL1.100e-1437.413'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A1E5VPQ2_9POAL2.550e-1436.573'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A2S3HRX3_9POAL1.090e-1336.733'-5' exonuclease domain-containing protein n=2 Ta... [more]
A0A6A5V400_9PLEO3.610e-1338.24Uncharacterized protein n=1 Tax=Bimuria novae-zela... [more]
A0A4P9XK89_9FUNG1.040e-1238.733'-5' exonuclease domain-containing protein (Fragm... [more]
A0A7J0H8D5_9ERIC1.310e-1231.723'-5' exonuclease domain-containing protein n=2 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 46..155
e-value: 5.0E-10
score: 39.4
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..155
e-value: 8.2E-38
score: 131.9
NoneNo IPR availablePANTHERPTHR136203-5 EXONUCLEASEcoord: 1..155
NoneNo IPR availablePANTHERPTHR13620:SF65OS01G0660800 PROTEINcoord: 1..155
NoneNo IPR availableCDDcd06141WRN_exocoord: 1..155
e-value: 3.2654E-45
score: 146.955
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig83contigA-nodosum_M_contig83:670084..671039 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig83.60.1mRNA_A-nodosum_M_contig83.60.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig83 670083..671039 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig83.60.1 ID=prot_A-nodosum_M_contig83.60.1|Name=mRNA_A-nodosum_M_contig83.60.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=229bp
GLDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPPTELPGSLV
GLLEDASLTFTGVGINADCTRIEKFFGVKVAHAVDLAKLALIRKVPLGLK
RGLADLCYHLLGRSLSKDGRVRFSRWNRKDLSEKQKTYAALDAYVSTVLY
SCIEEKSDPIFKDGEDLQAGDHVRLYTRTGNACVGVGVVKEYEGQVWGRT
GIHLVPAMTTRARVRRWIVRVDEVLMPGA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0025623'-5'_exonuclease_dom
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf