mRNA_A-nodosum_M_contig819.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig819.14.1
Unique NamemRNA_A-nodosum_M_contig819.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig819.14.1 vs. uniprot
Match: D7FM82_ECTSI (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM82_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 3.630e-18
Identity = 56/123 (45.53%), Postives = 66/123 (53.66%), Query Frame = 2 
Query:   29 LSVRGFIHLMRRSTAA--GNANVGIVTRCRCFSSTSVVGTSISQEGAGKKVADSGPRSVVVTETK------PEEDEAVKLEICGDIEGGGEEAEVEEMLQDGPAGKEWGGPTRGGVLREPTRF 373
            L  +  IH +R S+ A  G     I  R RC SS S                 S    V VTETK      P +   VKL++CG+IE    + E+EEMLQ+GPAGKEWGGPTRGGVL EPTRF
Sbjct:    3 LGSQRIIHFLRHSSMARPGACRAIIFARHRCLSSAS------GDSRFPAPSTGSAAHGVTVTETKAGAGDRPGQQGPVKLDLCGEIEDDVGDEEMEEMLQEGPAGKEWGGPTRGGVLGEPTRF 119
[Close]
BLAST of mRNA_A-nodosum_M_contig819.14.1 vs. uniprot
Match: W7TYA2_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYA2_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.060e-6
Identity = 38/95 (40.00%), Postives = 47/95 (49.47%), Query Frame = 2 
Query:  107 CRCFSSTSVVGTSISQEGAGKKVADSGPR-----SVVVTETKPEEDEAVKLEICGDIEGGGEEAEVEEMLQDGPAGK-EWGGPTRGGVLREPTRF 373
            C  F STS +      E        S  R       V+ E       AVK + CG++E    E E+EEM   GP+G+ EWGGPTRGG  +EPTRF
Sbjct:   61 CHQFCSTSSLQQGAEDEAQATSPGPSNARVKEDEGGVIIEVGTTSQSAVKKDTCGEVEEA--EDEMEEMFVMGPSGRVEWGGPTRGGRHKEPTRF 153
[Close]
BLAST of mRNA_A-nodosum_M_contig819.14.1 vs. uniprot
Match: A0A7S1U9V4_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9V4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.630e-6
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 2 
Query:  275 EEAEVEEMLQDGPAGKEWGGPTRGGVLREPTRF 373
            +E + EEM+ DGPAGKEWGGP RGG L EPTRF
Sbjct:   95 DEEDWEEMILDGPAGKEWGGPRRGGKLAEPTRF 127
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig819.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FM82_ECTSI3.630e-1845.53Succinate dehydrogenase assembly factor 4, mitocho... [more]
W7TYA2_9STRA2.060e-640.00Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A7S1U9V4_9STRA2.630e-672.73Succinate dehydrogenase assembly factor 4, mitocho... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig819contigA-nodosum_M_contig819:222105..225817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FM82
PFAMsDUF1674
Model size374
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons2
Evalue5.01e-19
EggNOG OGs2CZB4@1|root,2S9G4@2759|Eukaryota
DescriptionProtein of unknown function (DUF1674)
Cds size357
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870138.2146304-UTR-A-nodosum_M_contig819:222104..2221201680870138.2146304-UTR-A-nodosum_M_contig819:222104..222120Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig819 222105..222120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870138.226184-CDS-A-nodosum_M_contig819:222120..2223701680870138.226184-CDS-A-nodosum_M_contig819:222120..222370Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig819 222121..222370 +
1680870138.2370937-CDS-A-nodosum_M_contig819:225710..2258171680870138.2370937-CDS-A-nodosum_M_contig819:225710..225817Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig819 225711..225817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig819.14.1prot_A-nodosum_M_contig819.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig819 222121..225817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig819.14.1

>prot_A-nodosum_M_contig819.14.1 ID=prot_A-nodosum_M_contig819.14.1|Name=mRNA_A-nodosum_M_contig819.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=119bp
MSGLLSVRGFIHLMRRSTAAGNANVGIVTRCRCFSSTSVVGTSISQEGAG
KKVADSGPRSVVVTETKPEEDEAVKLEICGDIEGGGEEAEVEEMLQDGPA
GKEWGGPTRGGVLREPTRF
back to top

mRNA from alignment at A-nodosum_M_contig819:222105..225817+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig819.14.1 ID=mRNA_A-nodosum_M_contig819.14.1|Name=mRNA_A-nodosum_M_contig819.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3713bp|location=Sequence derived from alignment at A-nodosum_M_contig819:222105..225817+ (Ascophyllum nodosum dioecious)
TTTCTGTAAGGTAGAGATGAGTGGGTTGCTTTCCGTGCGAGGCTTTATCC
ACTTGATGCGCCGTTCAACGGCAGCAGGCAACGCAAACGTCGGGATCGTG
ACGAGATGTCGCTGTTTTTCTTCCACGAGTGTTGTTGGAACGAGCATCAG
CCAGGAAGGCGCTGGCAAGAAAGTTGCTGACTCTGGTCCGAGATCAGTTG
TTGTAACGGAGACTAAGCCAGAAGAGGACGAAGCCGTCAAGCTGGAGATT
TGCGGTGACATTGAAGGTGATAAGGCTTACCAATACTAATACTATTAATA
TTTACAGTCATAATACCCATACTGGTCGACTCTTCGCGTCGGGGCCTCGT
ACCGTTGAGTTCCAGACCGATTAAGGTTGAGTCAGCGGTCTACAAAGTAC
ACGAAACACGCTTGCTAATGCTATCCTTGTGCGCGGTTGAATGTTGAGTC
AACACCCGACAAATCATCGACCCGTCTACTCCACTCCTACAGCAGTACGT
ACAAGACTGCAGTAGCAACATGCAGCAGTAGTTCTTTAGTCTACAACTTC
AAATTGTCTATAATTCTGAAACCGTTTCTCGAGCGGCAACTCTTACTCGT
CGGGGATCGGAGACCAGCGCATCTGTAAACCCGTATGAGCATCCGCCCGG
TCATGTTAGGAAGTTGCCAAAACGTTTAGGTAGGAACACTGGCTGCAAAG
AGAAAAAACTCTTTGTGAGATTCAATCGGGTTCCCCAATCCTAGTACAGT
AGCATAGTGTCAACAATACTAAAATATCGGGGAGAAATTCACCGTTATGC
CGTGTGTGTGTGTGTGTTTTGTATAGACTAAAATTAATCGCCATGCAGGG
ACACCAAAGCGGAGGTAAAATCACACGATGAGCCTAAATATCCATAACTC
TGTAATATTATTTCTTCACGTATAGAGCTATTATAGTGTGCTACTAGATA
AGCTCAGAAGGTCTATAGGCGCGTTCTGATTTTTCTTTAAAGAGATTGTT
TATCTAGTCCACCTCTTGAAGTGCAGAGCAAGCTGATTGTTGTGAAGAAG
TTTGGCATTCCTTCTGGCGAAATGAAGTGTCGATTGCCTTTTAGGAGTAA
ATGCCCACTGGGGACTTATAAAAGCACCACCTATAATCAGCAATCATCGT
CTTCTGACTCACAAATATTTGTACCCGTCTCAAAACCCTAACAAAATTAC
TAAATAGTACCTGGTAGTCTGTTCCTGTCTCTGTTTTTATAAAAAATCTG
AATTAAAGCACTGTTAAGGAGAATTGTGTCGAAAAGTTTGATGAGGAAGA
TCAGCCGTAATAAGCACAAAAAATCTACTCCGAGTACACGTGTACATGGG
ATTCAGTCGGGTTCGCCGATAATCGTCCCATCATAGGATCAACAATATCT
AATGGCGGAGAGAAACCCACCCACTATACTGTACACTTACACTTGTCGCC
ACGTAGGGACACACCTATCGGTCCTATCACTAACACCTCAATAAATACAC
TGGAAGTATATATTCGAAAGGTGCCAATGACCAATTTTTGTGCGCTTCTC
TTTTCCCACACCCACTATTGGTATGTACTTGTAGTGGACATACGCGATAC
ACTATGGTACAGAAAGCATCGGAAGCGTGTATGCGGTACTTATTTTGATG
AAAAATTACCCGTATGCTGCTGTAGGTGCAGTCTACACATTACGTAAAAG
AAGTTTTCACCAAGAGATGTAACTTGTAGAGCACAGGAGCTGAGGTATTC
AAGCCGTGTGTCTCGAGGGTCATGGATGCTACGACCTTCGACCTAGAGCT
ATTCGTAAGACCTTCGAGGGACGAGGAGTCGCACAGACACGGTGGTGTCG
AGCTTCGTCCCACGATAGGAAAGAGTATGTGTTTCAGTACGTGAAACCCG
AAAACGTGACAAACGAACGATTGCAGTACTTTCAACGTACAGTGGCTACC
AGCCTTTTTCTAAGGCTGAGTGAAAGGATCGAGGCATCGCACGCATGTAA
GTATCGTTTTATAGTAATGCATATCGCCCATTCTAGCGTGTGCTCTACGG
GAAGAAAAAAAATAGCGCCTGGTTCGCTTTTGAAAAACGCCTTTTATTAT
GCATGGTATTACCCTAGATATTGATCAACCGGGCACCCTTTGGTTACTAC
AGTATAACTTCAAACTTTTGTCCACCTACTGTAGCGATTCCCATCTAGAC
TACTCAGTTGACAACCAATCTGCTGAGCTCGCGATGGCCAACAATATCAA
CAACAACGACAACTGCAACTGAACTGCTGTTCACACTTTTTTTTGCGTTT
TTACTTCAAAAAAAGCGGAAACGTTTTGTGTTTCTTACTTGTGAACCTTC
CACGGCCACTGTACATGTATAGGTGAAAAAAAAGAAGGGACATTTCCACA
AAAAATGTCGTATAGCTGATACTTGTACAACATTTTACGTATGCCGTCGC
CACGCAATGGCGTGCTTCGCTTTGAGCTTACAGCACCTCGGACATCAAGA
TTACTGTGGCCCCGGACACGATGACTTGTTCTGCTTCGACACTCTTCCTA
TTTACAGTACAATGTCTCACCAATCGATCGCTCTCTTGAGCCATGGACGT
GTTCCACATTATATAAGTTTATCACTACTATACCAGTTTCTATATATCTT
ATAAGTTAGAAGCACCAAACCATTAGACTACTCAGTCACGTGACTGAGTA
GTCCAATGGTTTGGCGCTTCTAACTTACAAAAGATTTGTCGGGTTCAACA
GCGATCTCCGGGGACCCCCCCTCGCCACGCACTGCAGTATCTCAATGTTT
GCACAACTAACTTTTTCATTCTTGCCGGCACCGGGGATTGAACCCGCGAC
TTTTATTGTAAGCTAGAAGCGCCAAACCATTGGACTACTGAGTCACGTGA
CTAGGGGGGGTCCCCGGAGATCACTGTTGAACCCGACAAATCTTTTATAA
GTTAGAAGCACCAAACCATTAGACTACTCAGTCACGTGACTGAGTAGTCC
AATGGTTTGGTGCTTCTAACTTATATATCTCACCTACGGCCGATGGGCCT
CAGCGTGCTAGGTAATCAATCCCACGTTCTGCAACGTTGCCACCCCACCT
GTGGCCACTCGGGATCATCCCGTCTCTCCCCGATCCTAGCGTCAGTAGAT
GCCTACTGCTACGAACTGTCGTTATTGCTCTACAAGTAAGCGTTCTGTCT
GCGGCAGTACTACAGTACCACGGATCCATAAGGATCTTTCCCCAAGGTTC
AGGCTGGTCTGGAGTCGGGAGAGCACTAGACAACACGAAAGAACACGAAG
CGTCAAGAATCGCCAAAAGTCGGCGTGGACGCGCTCTCTCATAGCACCTC
GTGATCTGGAAAAAAAAGGGGGAAAAAAAAGCGCAAGCGTCGACCTTCAG
TCTTACGCGCACAACCCAATTTTTAAAAACCACTCAACAGATTACGTGCG
TCCGTACTTACAAGGAAGCCGCCGAGGGACCTCGCGTGACCCAGGCTTGC
GCAGACGCGATGAGTAGATACATCCATCGTTGACCATGCCCAACCGAGCA
GGTGTCATTACCATGTCATCAACATAGTATCTACCCTATTTTTTCAACAC
ATTCAGGAGGAGGGGAAGAGGCAGAAGTGGAGGAGATGCTTCAAGATGGC
CCGGCGGGAAAGGAGTGGGGCGGTCCCACCCGAGGAGGAGTGCTCCGGGA
GCCCACGAGGTTC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig819:222105..225817+

>mRNA_A-nodosum_M_contig819.14.1 ID=mRNA_A-nodosum_M_contig819.14.1|Name=mRNA_A-nodosum_M_contig819.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig819:222105..225817+ (Ascophyllum nodosum dioecious)
ATGAGTGGGTTGCTTTCCGTGCGAGGCTTTATCCACTTGATGCGCCGTTC
AACGGCAGCAGGCAACGCAAACGTCGGGATCGTGACGAGATGTCGCTGTT
TTTCTTCCACGAGTGTTGTTGGAACGAGCATCAGCCAGGAAGGCGCTGGC
AAGAAAGTTGCTGACTCTGGTCCGAGATCAGTTGTTGTAACGGAGACTAA
GCCAGAAGAGGACGAAGCCGTCAAGCTGGAGATTTGCGGTGACATTGAAG
GAGGAGGGGAAGAGGCAGAAGTGGAGGAGATGCTTCAAGATGGCCCGGCG
GGAAAGGAGTGGGGCGGTCCCACCCGAGGAGGAGTGCTCCGGGAGCCCAC
GAGGTTC
back to top