prot_A-nodosum_M_contig819.14.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig819.14.1
Unique Nameprot_A-nodosum_M_contig819.14.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length119
Homology
BLAST of mRNA_A-nodosum_M_contig819.14.1 vs. uniprot
Match: D7FM82_ECTSI (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM82_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 3.060e-18
Identity = 56/123 (45.53%), Postives = 66/123 (53.66%), Query Frame = 0
Query:    5 LSVRGFIHLMRRSTAA--GNANVGIVTRCRCFSSTSVVGTSISQEGAGKKVADSGPRSVVVTETK------PEEDEAVKLEICGDIEGGGEEAEVEEMLQDGPAGKEWGGPTRGGVLREPTRF 119
            L  +  IH +R S+ A  G     I  R RC SS S                 S    V VTETK      P +   VKL++CG+IE    + E+EEMLQ+GPAGKEWGGPTRGGVL EPTRF
Sbjct:    3 LGSQRIIHFLRHSSMARPGACRAIIFARHRCLSSAS------GDSRFPAPSTGSAAHGVTVTETKAGAGDRPGQQGPVKLDLCGEIEDDVGDEEMEEMLQEGPAGKEWGGPTRGGVLGEPTRF 119          
BLAST of mRNA_A-nodosum_M_contig819.14.1 vs. uniprot
Match: W7TYA2_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYA2_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.780e-6
Identity = 38/95 (40.00%), Postives = 47/95 (49.47%), Query Frame = 0
Query:   31 CRCFSSTSVVGTSISQEGAGKKVADSGPR-----SVVVTETKPEEDEAVKLEICGDIEGGGEEAEVEEMLQDGPAGK-EWGGPTRGGVLREPTRF 119
            C  F STS +      E        S  R       V+ E       AVK + CG++E    E E+EEM   GP+G+ EWGGPTRGG  +EPTRF
Sbjct:   61 CHQFCSTSSLQQGAEDEAQATSPGPSNARVKEDEGGVIIEVGTTSQSAVKKDTCGEVEEA--EDEMEEMFVMGPSGRVEWGGPTRGGRHKEPTRF 153          
BLAST of mRNA_A-nodosum_M_contig819.14.1 vs. uniprot
Match: A0A7S1U9V4_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9V4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.280e-6
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 0
Query:   87 EEAEVEEMLQDGPAGKEWGGPTRGGVLREPTRF 119
            +E + EEM+ DGPAGKEWGGP RGG L EPTRF
Sbjct:   95 DEEDWEEMILDGPAGKEWGGPRRGGKLAEPTRF 127          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig819.14.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FM82_ECTSI3.060e-1845.53Succinate dehydrogenase assembly factor 4, mitocho... [more]
W7TYA2_9STRA1.780e-640.00Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A7S1U9V4_9STRA2.280e-672.73Succinate dehydrogenase assembly factor 4, mitocho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig819contigA-nodosum_M_contig819:222121..225817 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig819.14.1mRNA_A-nodosum_M_contig819.14.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig819 222105..225817 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig819.14.1 ID=prot_A-nodosum_M_contig819.14.1|Name=mRNA_A-nodosum_M_contig819.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=119bp
MSGLLSVRGFIHLMRRSTAAGNANVGIVTRCRCFSSTSVVGTSISQEGAG
KKVADSGPRSVVVTETKPEEDEAVKLEICGDIEGGGEEAEVEEMLQDGPA
GKEWGGPTRGGVLREPTRF
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