prot_A-nodosum_M_contig1215.4.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1215.4.1
Unique Nameprot_A-nodosum_M_contig1215.4.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length89
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1215.4.1 vs. uniprot
Match: A0A6H5JIG0_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG0_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.360e-33
Identity = 60/88 (68.18%), Postives = 70/88 (79.55%), Query Frame = 0 
Query:    4 QVWSVCRRHQDFLKLHACLQKRFPALALPRLPQPPSGAA--VLDPATLERTRAGLRSYVTAIVADVPVAWGVEEFVMFLDSAEKGRRL 89
            QVWSVCRR++DF  LH+CLQ  FPAL LPRLP+PP+G     L+PATLER RAGL++Y  A+V  VP AWG+EE VMFLDS EKGRRL
Sbjct:   40 QVWSVCRRYKDFQSLHSCLQATFPALVLPRLPRPPTGGGGMALEPATLERARAGLQAYAAAVVGSVPAAWGLEELVMFLDSEEKGRRL 127
[Close]
BLAST of mRNA_A-nodosum_M_contig1215.4.1 vs. uniprot
Match: D7FV50_ECTSI (PX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV50_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 5.960e-32
Identity = 60/88 (68.18%), Postives = 70/88 (79.55%), Query Frame = 0 
Query:    4 QVWSVCRRHQDFLKLHACLQKRFPALALPRLPQPPSGAA--VLDPATLERTRAGLRSYVTAIVADVPVAWGVEEFVMFLDSAEKGRRL 89
            QVWSVCRR++DF  LH+CLQ  FPAL LPRLP+PP+G     L+PATLER RAGL++Y  A+V  VP AWG+EE VMFLDS EKGRRL
Sbjct:  508 QVWSVCRRYKDFQSLHSCLQATFPALVLPRLPRPPTGGGGMALEPATLERARAGLQAYAAAVVGSVPAAWGLEELVMFLDSEEKGRRL 595
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1215.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIG0_9PHAE1.360e-3368.18PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7FV50_ECTSI5.960e-3268.18PX domain-containing protein n=1 Tax=Ectocarpus si... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036871PX domain superfamilyGENE3D3.30.1520.10coord: 1..88
e-value: 1.6E-14
score: 55.8
IPR036871PX domain superfamilySUPERFAMILY64268PX domaincoord: 4..82
IPR001683Phox homologyPFAMPF00787PXcoord: 3..82
e-value: 2.5E-12
score: 47.3
IPR001683Phox homologyPROSITEPS50195PXcoord: 1..89
score: 12.991118
NoneNo IPR availableCDDcd06093PX_domaincoord: 2..82
e-value: 2.23498E-12
score: 55.8267

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1215contigA-nodosum_M_contig1215:83126..83392 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1215.4.1mRNA_A-nodosum_M_contig1215.4.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1215 83125..83392 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1215.4.1 ID=prot_A-nodosum_M_contig1215.4.1|Name=mRNA_A-nodosum_M_contig1215.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=89bp
RHVQVWSVCRRHQDFLKLHACLQKRFPALALPRLPQPPSGAAVLDPATLE
RTRAGLRSYVTAIVADVPVAWGVEEFVMFLDSAEKGRRL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036871PX_dom_sf
IPR001683PX_dom