mRNA_A-nodosum_M_contig1215.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1215.4.1
Unique NamemRNA_A-nodosum_M_contig1215.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1215.4.1 vs. uniprot
Match: A0A6H5JIG0_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG0_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.360e-33
Identity = 60/88 (68.18%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:   10 QVWSVCRRHQDFLKLHACLQKRFPALALPRLPQPPSGAA--VLDPATLERTRAGLRSYVTAIVADVPVAWGVEEFVMFLDSAEKGRRL 267
            QVWSVCRR++DF  LH+CLQ  FPAL LPRLP+PP+G     L+PATLER RAGL++Y  A+V  VP AWG+EE VMFLDS EKGRRL
Sbjct:   40 QVWSVCRRYKDFQSLHSCLQATFPALVLPRLPRPPTGGGGMALEPATLERARAGLQAYAAAVVGSVPAAWGLEELVMFLDSEEKGRRL 127
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BLAST of mRNA_A-nodosum_M_contig1215.4.1 vs. uniprot
Match: D7FV50_ECTSI (PX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV50_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 5.960e-32
Identity = 60/88 (68.18%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:   10 QVWSVCRRHQDFLKLHACLQKRFPALALPRLPQPPSGAA--VLDPATLERTRAGLRSYVTAIVADVPVAWGVEEFVMFLDSAEKGRRL 267
            QVWSVCRR++DF  LH+CLQ  FPAL LPRLP+PP+G     L+PATLER RAGL++Y  A+V  VP AWG+EE VMFLDS EKGRRL
Sbjct:  508 QVWSVCRRYKDFQSLHSCLQATFPALVLPRLPRPPTGGGGMALEPATLERARAGLQAYAAAVVGSVPAAWGLEELVMFLDSEEKGRRL 595
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1215.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIG0_9PHAE1.360e-3368.18PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7FV50_ECTSI5.960e-3268.18PX domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1215contigA-nodosum_M_contig1215:83125..83392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5022.CBX96561
Preferred nameMVP1
PFAMsPX
Model size270
Max annot lvl4751|Fungi
KEGG koko:K17922
Hectar predicted targeting categoryother localisation
GOsGO:0000407,GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006897,GO:0006914,GO:0006996,GO:0007009,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0019898,GO:0031410,GO:0031982,GO:0032266,GO:0033036,GO:0033365,GO:0034613,GO:0035091,GO:0042147,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061919,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0097320,GO:0097708,GO:0097749,GO:0098657,GO:1901981
Exons1
Evalue0.000185
EggNOG OGsCOG5391@1|root,KOG2273@2759|Eukaryota,39U3X@33154|Opisthokonta,3NWJE@4751|Fungi,3QPNK@4890|Ascomycota,1ZX9Q@147541|Dothideomycetes,4KC5N@92860|Pleosporales
DescriptionPhoX homologous domain, present in p47phox and p40phox.
Cds size267
COG categoryU
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866641.095584-CDS-A-nodosum_M_contig1215:83125..833921680866641.095584-CDS-A-nodosum_M_contig1215:83125..83392Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1215 83126..83392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1215.4.1prot_A-nodosum_M_contig1215.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1215 83126..83392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1215.4.1

>prot_A-nodosum_M_contig1215.4.1 ID=prot_A-nodosum_M_contig1215.4.1|Name=mRNA_A-nodosum_M_contig1215.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=89bp
RHVQVWSVCRRHQDFLKLHACLQKRFPALALPRLPQPPSGAAVLDPATLE
RTRAGLRSYVTAIVADVPVAWGVEEFVMFLDSAEKGRRL
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mRNA from alignment at A-nodosum_M_contig1215:83125..83392-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1215.4.1 ID=mRNA_A-nodosum_M_contig1215.4.1|Name=mRNA_A-nodosum_M_contig1215.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=268bp|location=Sequence derived from alignment at A-nodosum_M_contig1215:83125..83392- (Ascophyllum nodosum dioecious)
CGTCATGTCCAAGTGTGGTCGGTCTGCCGGCGTCACCAAGACTTTCTGAA
GCTCCACGCGTGCCTGCAGAAGCGCTTCCCGGCTCTCGCTTTGCCTCGGC
TGCCTCAACCCCCGTCCGGAGCGGCGGTTCTTGATCCTGCGACACTGGAA
AGGACGAGGGCGGGGCTTCGGTCGTACGTGACCGCCATCGTCGCGGACGT
GCCCGTCGCTTGGGGCGTTGAGGAGTTCGTAATGTTTCTGGATTCGGCCG
AGAAGGGGAGGAGGCTGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1215:83125..83392-

>mRNA_A-nodosum_M_contig1215.4.1 ID=mRNA_A-nodosum_M_contig1215.4.1|Name=mRNA_A-nodosum_M_contig1215.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=267bp|location=Sequence derived from alignment at A-nodosum_M_contig1215:83125..83392- (Ascophyllum nodosum dioecious)
CGTCATGTCCAAGTGTGGTCGGTCTGCCGGCGTCACCAAGACTTTCTGAA
GCTCCACGCGTGCCTGCAGAAGCGCTTCCCGGCTCTCGCTTTGCCTCGGC
TGCCTCAACCCCCGTCCGGAGCGGCGGTTCTTGATCCTGCGACACTGGAA
AGGACGAGGGCGGGGCTTCGGTCGTACGTGACCGCCATCGTCGCGGACGT
GCCCGTCGCTTGGGGCGTTGAGGAGTTCGTAATGTTTCTGGATTCGGCCG
AGAAGGGGAGGAGGCTG
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