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Homology
BLAST of mRNA_A-nodosum_M_contig121.61.1 vs. uniprot
Match: A0A6H5KY64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY64_9PHAE) HSP 1 Score: 102 bits (254), Expect = 3.040e-20 Identity = 56/107 (52.34%), Postives = 75/107 (70.09%), Query Frame = 3
Query: 588 EIGSLETELEALRKLKEEAARKKVVLKEGKSRRQERTNAADKRRGSVVELMDLETKSIQLEREALAWNEKLKMQMGLMLWSRPVKLLPHEVVLSYAAPHDSTLHHQV 908
++ LE EL AL ++ A KK L EGK+RR+ER AA KR SVV LM+LE KSI +E+EAL EKL +Q+GL LW +P+ LLP +V++++AAPHD L HQ+
Sbjct: 120 DVCGLEEELAALELRQQAVASKKAALLEGKARREERAKAAAKRSASVVRLMELEAKSIGIEKEALEMKEKLDVQLGLRLWCQPITLLPDKVMVAFAAPHDWGLKHQL 226
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1306 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Cds size | 891 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680866638.3458886-UTR-A-nodosum_M_contig121:753834..754220 | 1680866638.3458886-UTR-A-nodosum_M_contig121:753834..754220 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig121 753835..754220 - |
| 1680866638.4289477-UTR-A-nodosum_M_contig121:760866..760895 | 1680866638.4289477-UTR-A-nodosum_M_contig121:760866..760895 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig121 760867..760895 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680866638.3542912-CDS-A-nodosum_M_contig121:754220..754358 | 1680866638.3542912-CDS-A-nodosum_M_contig121:754220..754358 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig121 754221..754358 - |
| 1680866638.364198-CDS-A-nodosum_M_contig121:755041..755185 | 1680866638.364198-CDS-A-nodosum_M_contig121:755041..755185 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig121 755042..755185 - |
| 1680866638.3734338-CDS-A-nodosum_M_contig121:757397..757494 | 1680866638.3734338-CDS-A-nodosum_M_contig121:757397..757494 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig121 757398..757494 - |
| 1680866638.382348-CDS-A-nodosum_M_contig121:759039..759167 | 1680866638.382348-CDS-A-nodosum_M_contig121:759039..759167 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig121 759040..759167 - |
| 1680866638.3933191-CDS-A-nodosum_M_contig121:759632..759745 | 1680866638.3933191-CDS-A-nodosum_M_contig121:759632..759745 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig121 759633..759745 - |
| 1680866638.4041028-CDS-A-nodosum_M_contig121:760334..760470 | 1680866638.4041028-CDS-A-nodosum_M_contig121:760334..760470 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig121 760335..760470 - |
| 1680866638.4135625-CDS-A-nodosum_M_contig121:760731..760866 | 1680866638.4135625-CDS-A-nodosum_M_contig121:760731..760866 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig121 760732..760866 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig121.61.1 >prot_A-nodosum_M_contig121.61.1 ID=prot_A-nodosum_M_contig121.61.1|Name=mRNA_A-nodosum_M_contig121.61.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=297bp
MANMDEFPIQSVVVSPGSGSRDMEIPDGLLHALASTLNAASDEMEDKVAV VHEHAEAVVETAWRLHTDAPILAEIDHAIATRAVGDGKAMGMVRRVRDMA KQIKSNLVTEWKAWEVEVMTRLNIEAEKALAQVSKTGSASTARGNQIEEM ISQTDWARRSIKREESRASIRSRIEKTEAALAQTRSEIGSLETELEALRK LKEEAARKKVVLKEGKSRRQERTNAADKRRGSVVELMDLETKSIQLEREA LAWNEKLKMQMGLMLWSRPVKLLPHEVVLSYAAPHDSTLHHQVPQQ* back to topmRNA from alignment at A-nodosum_M_contig121:753835..760895- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig121.61.1 ID=mRNA_A-nodosum_M_contig121.61.1|Name=mRNA_A-nodosum_M_contig121.61.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7061bp|location=Sequence derived from alignment at A-nodosum_M_contig121:753835..760895- (Ascophyllum nodosum dioecious) AGGACCTGATCCGATTTGTCGCGCCAGAGATGGCCAACATGGACGAGTTC
CCGATTCAAAGCGTCGTGGTATCGCCGGGTTCTGGGTCTCGTGACATGGA
GATCCCGGACGGCCTGCTTCATGCTCTCGCCTCGACGCTGAACGCCGCCT
CTGATGAGATGGAGGTGTGTCCTTCTGTGCTTTTGTGTGTGATGTTTCAG
GGTTGTTGAGATAGCTTTTTGTGGTACGTAAGCCTACAGGTAGGTGTTTG
AAACTATAATAGTCTACGTAAGGATACCAGGTATGTGTTTTGAGAAATTT
TGCTCCCGGAGTACTGTCTTTTACGTACAGGAAACTCGTCTAGACTTGAT
AACCTGTGTTCGAAAATAAGTTTTTCTTCTTTTATTTTGCATTGATATAT
ATATTTTTTTGTTGTTGTCGTAAAGGACAAGGTGGCCGTCGTCCACGAGC
ACGCCGAGGCTGTCGTAGAGACTGCCTGGAGGCTTCATACGGACGCACCT
ATTCTGGCGGAGATCGACCATGCTATCGCCACGAGAGCAGTCGGAGACGG
AAAGGCGATGGGTGAGGGATGAGCGATGTCTATTTTTATAAAGTTTATTA
AATCAGGGTTCATTAGATATGTTGATTTTAATTTTTTACTTTTTTTTCAA
GAAAATGTTCTTATGCATTTGAGGCGCCCAGGTAAAGATATTGAAATTTT
TGTGGATCTAGATTTTCAAAGGCATATTTTAGAAAAAGGCTTGGAAAAAA
TCTTATTTATTGTCTTGCAAAGGCGGTTAATGAGCTATGAGACTCATGCT
CAGCGATGGGAAACTTTTTTTTGTCTCGTTGCGGACGGTTTGATTTCTGT
TATTTTTATATAAAAGTTTTGCGTTGGTCATTGTTTTCTGGATATCATAG
ACCTTGTTGAACTTTACATGATATGTACAAGTCTAAATATACGACAGAGT
GTTGTGTCTGGTGCACTTTATCGTTGTGCGACGGATATTATTCAGTATCT
CATTGTGTTCCCTGAAACCTAAGGAGATACTTCAAACCCAATTTATTGTT
TGTTGAAACAGCTTTTGGTCTTTTCCCACACAACTACTAACGGAAATAAT
GACTTGCACTCTATGTAAATCCAACACGTCGCTCGTTCGTTTTGCTAAAG
GCATGGTGAGGCGTGTTCGAGACATGGCGAAACAGATCAAGAGCAATCTG
GTGACAGAGTGGAAGGCTTGGGAGGTGGAAGTGATGACGCGCTTGAACAT
CGAGGCCGAGAAGGTGCTATTTATTGACATAGACTATTAATACTGATACT
GTGGAAAGGATATCTTATTGCTATTAGACTAATACTGCAGAAGGGATATA
TTATTGCTATTTATACCAGGTACTGTAGAAAGAACTTATTACTGCCATTA
ATACTGGAGAAAGTATTGTTTTTCTGGGGGGAGTAGGCCATTGATCGACG
ATTATTGCCTTTTTTTCATTATTTTCTGTCTATTAATAAAAGTTTTTCGC
TTTTTTTTCGTTTTCTAGATTTTCTCTCCCGTGTGGCAGCTGACATTTTG
TTTTTTATAAGGGTTCAACTCAAGAGGTCAAGGGTACATTTATGCCACAA
CAGCGAAACCTACACCGTTGTTTTTAATATTAATGTTGGTGTTAATGCAA
TACAACGGTTTTATTCACCTTGGAAGGCCTGTCGTTCTGTTTTGTGTAAA
ACCGTTTCGTTTTTCTTCAATCTTACAGGCGCTCGCTCAGGTTTCTAAGA
CGGGCTCGGCGTCAACGGCCCGGGGCAATCAAATCGAGGAAATGATTTCT
CAAACCGACTGGGCGAGGCGTAGTATCAAGCGAGAGGAGTCTCGCGCCAG
TATTCGGTGAGGTTTTCGTAAAACGTAGATGTCTTTTATGAGGTAGGCGT
AAAACGTTTTGTGATCCGTGCGTCCAGTTCGTGAGAATGACGTCCTCTGC
TTCTGCTTTTAGATTTGAGTGCAGAAGGCAAAACGCCTGCGACAAATCTG
TCTTCGATGTGAGAAAATTCATTGATATCTTTTAAAACTTGACTCGAAAG
AAAAAATCAAACCGACGACACTTAAATAAAATTTTTCTTCAATACCACGA
ATTGTTAAAATTATCATCATTTCGATGTCCATGTCGTACTGGGGCGTTGT
TGAGAAAAACGCGAGGAACGTAACTGCGTGGTGACGTCATATTAGGGGAC
GTTTTGCTGTTGTCCCCTTGTATGACGTCACCACTACAGTTGTAGTGACG
TTCATTGTTAAAGGAAAATCTGAACGCATCTAAACCTTCCAATTAGTCAA
AAGGTTTAGGTGGGAACAGTGGCTGTAGGGACAAAAACTCTACATGGTAT
TAGAAGGGTTCCCCAATGGAGTTACATAGGGTCAACAGTATAATATCGGG
GAGAAGCCCACCGTTACACTGTACACTAACATTAATCACCATGTAGGGAC
ACCAAAACAGAAGCGGACTAGTTATTATACAGTATTTTTGGACTAAGAGT
TCCAGACTAAAGTAGTAATTCTTCAATTCTATAGATAAGTTAAGTTAAAA
ATAGGGTTTGACGTCATGTGAAGGACCTCAAATACAGTAAGGTCATATAG
ATAGTCGTGGATATGTTACTCATTATACTATAAAACCTACGTTGGGGATC
AGAACTAGAATATACCTACAGTTATCTATGAACTTAATGTGAGGTCTCGA
ATTACAAGGGGCATACTATACAGTATTTTTGGACTAAGAGTTCCAGACGA
CGGTACAATAACATTCTATAGAGAAACTAGGTTAAAAATGGGGTTTGGTG
CTGTTTATTGTTGTTGTGGCTCACCTACGGCCAATGGGCCGCAAGGAGCT
CGCTTACTAATCCCAACTATTGCAATGTTGCCATCCTGCCTGTGGCCACT
AATGATCTTCCCATCTCTCCCTTCCGCGGTTCTCGCCTTTAGGGGCATTT
TATGCCGCGATGGTGGAAGTTAGTTCAGCACTGCTGTTACACCTCGACAA
ATTGTTGAATTTATCTTACTCACCTTTTCACGCCCTACTATTACTAATAC
TATTACCATTACTACGGAAACCAGAAAAAATAAATCGTCCTGTCATCGTT
TGATTTTGAAGTCGCAAATTTGATTAATCGTGAAACTGTCAGGTTATCCA
CTTCTAAATACTATTCGAGGTACTACTGTACAATTTATAATGTACTAATA
AGACTGAATAGTACAGTAGTACCTCGAATAGTATTTAGTAGTGGATAACC
TCTGTTACTATTAAAGAAGGCACTGAAACTGCGAGGTACTCTCTGTATTC
CACTCAGGCGGTGTGGATTTTGTATCGCACAGTAATTTGTGTAAAATACA
TTGTACCAGTAACTTGTGTTTGTACATTTTCTATGCATTATATTAAAACA
GCTCTCGAATTGAGAAAACGGAAGCCGCTCTTGCCCAAACTCGGTCTGAG
ATCGGCTCGCTCGAGACCGAATTGGAGGCGCTCCGGAAACTAAAAGAGGT
GAGTTGATTTATCGATTGCACTTTTACATCGCTCTAGAACTGTGGTAGAG
CCTATATACTCAAGTTCACAAATCTCAGGCGCGAACGGGGACAGGGGAAT
ATTATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGTAACTTTACCCG
GTTGATCCATACTCGGCTAAAGTAAGTAATGACTATAGAGCTACATACGT
AGTGTCAATACTAATACCGTTATATTAGATAAAAAGTTGAAACGTTTATG
CTATTATTATCAGTATCGATAATTGTTATGCCGAACCGGGGTTCGCTGTC
GATTTTCCCTCACAAAATCGCACACTGGTTGAAGTCTCTGCAATTTATCC
AAATATACAAGCGTTTACTAAGGCCAACCGCTATGCACCACTCGAGTACA
AAAATGAAACACAGAAATTTGCTCATTTCCGCGGCAATTCTTTCTGTGTT
TTCTTTTTTGTATGTGCCCCGCTATTGACTGGGCGAATGAACGAAAAAAC
AAAAATGAGACGGAGGCCCGTGGAGTACTGGCCATCCAAGTCTCTAGCCC
CCTAGTTTGGCATTTGGAAATGAGGCCCACCTTGCGTCCTCAGAAGCCGG
TTTTGTAATGTGCTCCGAAAGGCGTGAACAGTTCCGTAGGTGTGTTTTTT
TTTGTGGCCACCTGCAGAAAAGTCTACGGAAATTTGTTTATTTTTGTTTT
TTTGGAGTAGTTTTTTCGTACATGCAAGAAAAGATCTCAGTCCCATAGCG
GAGAACGATTAATTCGTGGGTACACAAAATTCGACTTCACGGTCGACGAG
GGAAAGGGACGGCTGAATCCTGCTCGCGAGAAAAATTAAGGCAAGCACCG
CAGAAGGAAGGTGGCGAAATCCTGTGTGAGCTTTCTCCTGTGTGACCCCG
GCTGGTGCGTCCACAAGTCTGACGTCGAGAATAAATGGGATGACAACACA
CACACACACACACTCAAGAGGTTTTCGTAACAAGTATCATTAATCTCCCC
TTGGGAAGATCAACGCGAGTGGCATAGAATGACTAGGATGACAGGGCCGA
ATTGCGCGGTTATGTGCAATTGAATAAAAACATACACACACACACACACG
CATCGAGCTAGTGTTAGCCACACAGAATGCAGTATTCACAATCATGCGAT
ATTGGAGCAGGGAGCTGACAAACAGTTTTCACAATTATGCGATGTTGAAG
CATGGTTATCGTTCGTACACATGATTGATATACAGATTTATTTTTTTAAA
CATAAAGTGTGCTTTCGATTGTTTGTTTAACCCTTTTGGTACTATCCGTC
TGACAACGGCTATATATATATATTTATACAGTCCTGTGCTGCTTGCGCTA
CTTTACATGGCCAGCCACCATAATCAGTCATTTTACAGTACACTGTTTAC
ATACCCCAAGTAGTAAACGCCTACTTCGTCTCTAACCGTAGGTGTTAAGA
GGTTGTTAGTACTAAACTAGTACGACATTTTTCTGGAAAGTTCATGTGAA
GTCAAGCGAAGAACAAAGTTGGTTTGGGGCTTTCATTTTGTACCGTTCAC
AGGTTTGCGGGGTTGATTCATGGTAGATCCTAGCTTAGCCGTATCTTGGG
ACTGCTTTTAGTTTGGGAAGGTACTGTATTCGGGCTCCTGATCTCGCTGC
ACAATCAAGGCTGGAAAATAAACGGGCGGTCGACCGCCTGTTAAGCCCTC
TCAAGTCCCAAACGGGTTAAACATAAATGGGATTTTGGATGAATTGGAAA
AGTTCTGACCTTGGCACAGCTGTTTGATATTTTACCCTCGTTTTTTAAAA
CTCTACAAAGTATTGTAGCATTCAAGAAGGGAATTATACTGGAGCAAAAT
ATTGAATTTTCTGAAGGACAAGGAGAAAAAATCGCATGGCGGCTACCATT
TCTTTTCTTATGCGATTATGCTTGAAATAATACAGGATGCCGAGTTTTTC
GGTTTTGAAAGCACATGTCATTATGTTTGTTCAAAAAAGGTGGTGTGGGT
TTGTGTATAGCAAGTGTCTTGGGTTGTTGTTATTATCAAATTATTTGTTT
TCACGCATCCATGAGATCATCTACTGTGTGCATTTTTCTGTTTTCTAATT
TTGTATGCCTTTTTGTCTTTCTAAGTTTTGCATGTTTTATATTTCATTTT
TTTTTTTTTTTTGGTCTCATTTGTTTGATGCTTTTTTTCATGTGTTTTTT
GCCCTCACAGGAAGCGGCTCGCAAAAAGGTGGTACTGAAGGAAGGAAAGT
CGCGAAGACAAGAGAGAACCAATGCCGCAGACAAGCGCCGGGGCTCTGTA
GTGGAGCTCATGGATCTCGAAACTAAAAGCATTCAGCTTGAGCGGGAGGC
TCTGGTGAGCGCGGTCTTTGTAATCAATAGCGCTCTAAATATAAACAGTG
CCTGTCATCAAGCGTTGCTGACATATTACTGTAGTCCAATTAAGGCCTTC
CTTGCTTCATTCCATTTTTTTTTTCATGGAGTGATACGTCGGTCGGTGTT
GTCGTTGTCTTATTTATTTATTTTTATTTTTTCTTCTTCCTGCTTTCTGT
CTTTTTTTTTTCTGGGCAACCCGCCCCTTTTTTAGATTTTGAACACTTTT
CTTTTTCTTTTTCAAACATGCTCAGTATTTTCTAAAGAAAAATCTGAACG
CATCTAGACCCTCGTACATTTTATTTATTTTTATTTTTTCTTTCATCTCA
CTTAGAGCCGATGGACCTCATCATTACCATCCTGCCTGTGGTCACAAAGG
ATCTTCCCATCTCTCCCCGGTTCACGCCTTACAATTTTTTTATCGCGATG
CAAGTTCAGCACTCTTACAACTCGTCAACCAATGGTTGAATTTTACTTAC
TCACGTTCCCACGCTTTCCGTTTCGAAAGAAAGAACACAAATCCTACTTT
GGTAAGAATCGAACTCACGACCTCCGTACTAGCAGATGTACAGCTAGCCA
CAAGACCACTCCGGCGACGAGCAGTATTATGGTTATCTCGCAACTATGAT
ATACTTCGTACTATCGTATATTGATGTTGTGGTCCAGGCTTGGAACGAGA
AGCTAAAGATGCAAATGGGGCTGATGCTGTGGAGCCGACCAGTCAAGCTT
CTGCCTCATGAAGTAGTGTTATCCTATGCGGCACCTCACGACTCGACGCT
CCACCACCAGGTGCCTCAACAATAGTGTTTTAGTGTGGTATTGCTTTCCC
ACGTCTTCGCTCAAGCACCCAGTACATTCGTTAGTACAATGGTTCACAAA
AGTGTATCTTGTGTTGTGTTGCTTTCCGACGACTACTCTCAGGCACCAGG
CATTGTTCTAACATTACAGCTTATCTATGTTCCCACCTGACGTTTTGCCA
TTTTTTTTGCTTCCCCCTGATTGGGTGGATGCTCAGAATAATCACAATAT
ACTATCATAGAGGTTTATAGAGGTTTAGATGCGTTTATATTTTTATTGAA
ACCCAGTTTCGATCCCCCTGCTCATTATTGCCCGAAGTATTGTGCTATTA
ATAATTTATAGTAAGAGTGGGGAGTAATGGTTAGATATGGGAGACTGAAG
CGCCTCGTACC back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig121:753835..760895- >mRNA_A-nodosum_M_contig121.61.1 ID=mRNA_A-nodosum_M_contig121.61.1|Name=mRNA_A-nodosum_M_contig121.61.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=891bp|location=Sequence derived from alignment at A-nodosum_M_contig121:753835..760895- (Ascophyllum nodosum dioecious) ATGGCCAACATGGACGAGTTCCCGATTCAAAGCGTCGTGGTATCGCCGGG TTCTGGGTCTCGTGACATGGAGATCCCGGACGGCCTGCTTCATGCTCTCG CCTCGACGCTGAACGCCGCCTCTGATGAGATGGAGGACAAGGTGGCCGTC GTCCACGAGCACGCCGAGGCTGTCGTAGAGACTGCCTGGAGGCTTCATAC GGACGCACCTATTCTGGCGGAGATCGACCATGCTATCGCCACGAGAGCAG TCGGAGACGGAAAGGCGATGGGCATGGTGAGGCGTGTTCGAGACATGGCG AAACAGATCAAGAGCAATCTGGTGACAGAGTGGAAGGCTTGGGAGGTGGA AGTGATGACGCGCTTGAACATCGAGGCCGAGAAGGCGCTCGCTCAGGTTT CTAAGACGGGCTCGGCGTCAACGGCCCGGGGCAATCAAATCGAGGAAATG ATTTCTCAAACCGACTGGGCGAGGCGTAGTATCAAGCGAGAGGAGTCTCG CGCCAGTATTCGCTCTCGAATTGAGAAAACGGAAGCCGCTCTTGCCCAAA CTCGGTCTGAGATCGGCTCGCTCGAGACCGAATTGGAGGCGCTCCGGAAA CTAAAAGAGGAAGCGGCTCGCAAAAAGGTGGTACTGAAGGAAGGAAAGTC GCGAAGACAAGAGAGAACCAATGCCGCAGACAAGCGCCGGGGCTCTGTAG TGGAGCTCATGGATCTCGAAACTAAAAGCATTCAGCTTGAGCGGGAGGCT CTGGCTTGGAACGAGAAGCTAAAGATGCAAATGGGGCTGATGCTGTGGAG CCGACCAGTCAAGCTTCTGCCTCATGAAGTAGTGTTATCCTATGCGGCAC CTCACGACTCGACGCTCCACCACCAGGTGCCTCAACAATAG back to top
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