mRNA_A-nodosum_M_contig1207.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1207.10.1
Unique NamemRNA_A-nodosum_M_contig1207.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: A0A438K5H3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438K5H3_VITVI)

HSP 1 Score: 234 bits (596), Expect = 7.820e-64
Identity = 178/582 (30.58%), Postives = 276/582 (47.42%), Query Frame = 1
Query:   28 SPYELWFGKSPTAYHLRPFGTVGYARQSVREHKMAPKGEKCVFMGIPRN------FPTGTVSVLLVRSRNIVERQAVQWIDGPKKTGRDGTGSTPQLNVQELGQEQHEHEWQEAISELEGETQGALSDHGEDTQEVLSEDEREQQHEEEGAEARSASLEGPTVPALRKLAIDGNVPPILSSRTRSRKTPHRCGG-----GALHCFLPAIEAEEENGVEDVLACDDGGQMAMQATLDVSEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQADPRRVPEVV---DGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVK--KEAKIPAASGAQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
            +PYE+W G+ P   H++ +G   Y ++ ++  K+  + +KC F+G P+       +      V + R    +ER+ +      K+   D T    + N     QE HE E+++   ++   TQ                                  L+ PT+ A     +   V                          +H   P   +   +   D L       ++ +   +  +P+N  +AM+S + ++W++A E+E+  M  N V+  V   KD   IG K +YK+KIG DGKVE YK RLVA+G+ Q EG+ Y E +SP     SIR+LLA AA  D E+   D + A     P V     G   + +V++VDDIL    D   M      L  +F +KD+G+A Y +G  I R+R  R L   Q +Y+++++KR+N++  K   +P  +G  TLS+ D P+ PEE+E M   PY  AVGA+M+  T TRPD+A A+   +R+  NPG  H K V  I +YL  TK+  + YG     L ++ YTD+   +  D  +S+SG V  L  GA+SW S
Sbjct:  168 TPYEIWKGRKPNLKHIKVWGCPAYVKK-LQTDKLEARSDKCRFIGYPKETMGYYFYHPLDHKVFVARGGTFLEREFLAEGSHGKEIELDETQE--ETNETTAAQE-HEMEFEQPFFDVLKSTQ---------------------------------RLQSPTIVAPEPAIVQEQVNEXXXXXXXXXXXXXXLEQIQQPLNPIH--EPLRRSSRAHRAPDRLNLMVQDDLSNEVHHNDDDPKNYEEAMQSLDRNKWQEAMESEIESMKINKVWTLVEASKDIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTAFLNEEPCVYKRFSGSTIIFLVLYVDDILLIGNDIPAMQGTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGESE--LKLKGYTDASFASDKDDSKSISGYVFTLNGGAVSWKS 707          
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR)

HSP 1 Score: 201 bits (510), Expect = 5.400e-54
Identity = 137/402 (34.08%), Postives = 203/402 (50.50%), Query Frame = 1
Query:  709 EPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQA----------------------DPRRVPEV---------------------------------------VDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVKKEAK--IPAASGAQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
            +P++  +AM+S + D+W +A E+EM  M  N V+  V   K    IG K +YK+KIG DGKVE YK RLVA+G+ Q EG+ Y E +SP     SIR+LLA AA  D E+   D + A                      D  +V ++                                       + G + + +V++VDDIL    D  +M      L  +F +KD+G+A Y +G  I R+R  R L   Q +Y+++++KR+N++K  +  +P   G  +LS+ + P+  EE+E M   PY  AVGA+M+  T TRPD+A A+   +R+  NPG  H K V  I +YL  TK+  + YG     L ++ YTD+   +  D  +S+SG V  L  GAISW S
Sbjct:   92 DPKSYEEAMQSLDHDKWIRAMESEMESMKINKVWTLVEASKGIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKISGSSIIFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGV-SLSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGNSE--LSLKGYTDASFASDKDDSKSISGYVFTLNGGAISWKS 490          
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: A0A438JH99_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JH99_VITVI)

HSP 1 Score: 207 bits (527), Expect = 1.430e-53
Identity = 176/640 (27.50%), Postives = 275/640 (42.97%), Query Frame = 1
Query:   28 SPYELWFGKSPTAYHLRPFGTVGYARQSVREHKMAPKGEKCVFMGIPRN------FPTGTVSVLLVRSRNIVERQAVQWIDGPKKTGRDGTGSTPQLNVQELGQEQHEHEWQEAISELEGETQGALSDHGEDTQEVLSEDEREQQHEEEGAEARSASLEGPTVPALRKLAIDGNVPPILSSRTRSRKTPHRCGG-----GALHCFLPAIEAEEENGVEDVLACDDGGQMAMQATLDVSEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQA-------------DPRRVPEVVD------------------------------------------------GEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVK--KEAKIPAASGAQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
            +PYE+W G+ P   H++ +G   Y ++ ++  K+  + +KC F+G P+       +      V + R    +ER+ +      K+   D T    + N     QE HE E+++   ++   TQ                                  L+ PT+ A     +   V                          +H   P   +   +   D L       ++ +   +  +P+N  +AM+  + ++W++A E+E+  M  N V+  V   KD   IG K +YK+KIG DGKVE YK RLVA+G+ Q EG+ Y E +SP     SIR+LLA AA  D E+   D + A              P     + D                                                G   + +V++VDDIL    D   M      L  +F +KD+G+A Y +G  I R+R  R L   Q +Y+++++KR+N++  K   +P  +G  TLS+ D P+ PEE+E M   PY  AVGA+M+  T TRPD+A A+   +R+  NPG  H K V  I +YL  TK+  + YG     L ++ YTD+   +  D  +S+SG V  L  G +SW S
Sbjct:  504 TPYEIWKGRKPNLKHIKVWGCPAYVKK-LQTDKLEARSDKCRFIGYPKETMGYYFYHPLDHKVFVARGGTFLEREFLAEGSHGKEIELDETQE--ETNETTAAQE-HEMEFEQPFFDVLKSTQ---------------------------------RLQSPTIVAPEPAIVQEQVNEXXXXXXXXXXXXXXLEQIQQPLNPIH--EPLRRSNRAHRAPDRLNLMVQDDLSNEVHHNDDDPKNYEEAMQILDRNKWQEAMESEIESMKINKVWTLVEASKDIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEDVYMTQPEGYTSMSDHNKVCKLRRSIYGLKQASRSWNIHFNKTIEKFDFVKCEEEPCVYKRFSGSTIIFLVLYVDDILLIGNDIPAMQGTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGESE--LKLKGYTDASFASDKDDSKSISGYVFTLNGGTVSWKS 1101          
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: A0A438GKY6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GKY6_VITVI)

HSP 1 Score: 207 bits (526), Expect = 2.090e-53
Identity = 130/347 (37.46%), Postives = 189/347 (54.47%), Query Frame = 1
Query:  706 SEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQADPR-RVPEVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVKKEAKIPAASGAQTLSKADE------PQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
            ++P +  QAM   E + W  A + EM  M  N V+D V  P     IG K ++K K    G +E+YK +LVA+GF Q EG+ YTE +SP     S+R++LA  A  D EL+  D + A     + E V G      V++VDDIL    D+  ++     L + F +KDMG+A Y +G  I R+R    L   Q  ++  +++RF +K       +     + K D       P+N  E+E+MK  PY  AVG+LM+A   TRPDIA AV  + R+  NPG+ H KA  K+ +YL  TK++ + Y  +   L +  Y+DSD   C+D+R+S SG + +LA GAISW S
Sbjct:  883 NDPESFSQAMNCKESELWYNAMKDEMSSMKCNDVWDLVELPNGAKTIGCKWVFKTKKDSLGNIERYKAKLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVSGSKVCFFVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETHINKVLERFRMKN-----CSPSVSPIVKGDSFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYR-RTSNLEVVGYSDSDFAGCVDSRKSTSGYIFILAGGAISWRS 1223          
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: A0A2N9IUC8_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IUC8_FAGSY)

HSP 1 Score: 203 bits (517), Expect = 6.720e-53
Identity = 184/629 (29.25%), Postives = 270/629 (42.93%), Query Frame = 1
Query:   28 SPYELWFGKSPTAYHLRPFGTVGYARQSVREHKMAPKGEKCVFMGIPRNFPTGTVSVLLVRSRNIVERQAVQWIDGPKKTGRDGTGSTPQLNVQELGQEQHEHEWQEAISELEGETQGALSDHGEDTQEVLSEDEREQQHEEEGAEARSASLEGPTVPALRKLAIDGNVPPILSSRTRSRKTPHRCGGGALHCFLPAIEAEEENGVEDVLACDDGGQMAMQATLDVSEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQA-------------------------------------------------------------DPRRVPEVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVKKEAK--IPAASGAQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
            +PYELW GK P+  H++ +G   + R+S    K+ P+ ++C+F+G P+   TG         +  V R A+                                  +E  S  E  T+  L +  +    V SE+  EQ             +  PT P+        N+     S TR  + P R         L  I   E +G ++                   +P   ++AM   + + W+KA E+EM  M  N V+  V +P+    IG K +YKRK+G  GKVE YK RLVA+G+ Q  G+ Y E +SP     SIR+LL+ AA  D E+   D + A                                                             D   V + V G     ++++VDDIL    D   M+     L   F +KD+G+A Y +G  + R+RK R L   Q  Y++ ++ RF+++   K   P   G   LSK   P+  EE+E+M+  PY  AVG+LM+A   TRPDI  AV  V+R+  NPG  H  AV  I +YL  TK + + +G +   L ++ YTDSD  + +D R+S+SG V  L KGAISW S
Sbjct:  168 TPYELWTGKKPSLNHIKIWGCPSHVRKS-NVDKLGPRSDRCLFVGYPK-MSTGFYFYNPSEQKVFVSRNAIFL--------------------------------EEDYSLNESRTKVTLEEQNDRPMTVPSENNEEQ-------------VIVPTEPS--------NMQEPRRS-TRIIRPPVRL------TLLNEIYQMESDGFDN-------------------DPVTYQEAMNDKDVEHWKKAMESEMDSMYTNQVWTLVDKPEGIKPIGCKWIYKRKLGPTGKVETYKVRLVAKGYTQKAGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNIREEIYMDQPVGFISHGQESKVCKLMKSIYGLKQASRSWNIRFDEAIKSFGFSQNIDEPCVYKKVSGRIITFLILYVDDILLIGNDVGAMSSIKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGVH-LSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKD--LNIQGYTDSDFQSDIDDRKSISGFVFTLGKGAISWRS 712          
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: UPI001131160E (DDE-type integrase/transposase/recombinase n=2 Tax=Escherichia coli TaxID=562 RepID=UPI001131160E)

HSP 1 Score: 201 bits (512), Expect = 3.870e-52
Identity = 179/641 (27.93%), Postives = 270/641 (42.12%), Query Frame = 1
Query:   10 STNEGKSPYELWFGKSPTAYHLRPFGTVGYARQSVREHKMAPKGEKCVFMGIPRN-------FPTGTVSVLLVRSRNIVERQAVQWIDGPKKTGRDGTGSTPQLNVQELGQEQHEHEWQEAISELEGETQGALSDHGEDTQEVLSEDEREQQHEEEGAEARSASLEGPTVPALRKLAIDGNVPPILSSRTRSRKTPHRCGGGALHCFLPAIEAEEENGVEDVLACDDGGQMAMQATLDVSEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA---------------------EQADPRRVPEV---------------------------------------VDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNV--KKEAKIPAASGAQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
            S +   +PYE+W G+ P+  H++ +G   Y ++ +   K+  + E+  F+G P++        PT    V++ R    +E+Q VQ           G G   +L ++                          SD   D  ++                           P+ + + +D     +    TR    P R G   LH      E E+E    + +   D      +A  DV   +             W  A ++E+  M +N V+D V  P+  + IG K ++K+KIG DGKVE YK RLVA+GF Q +G+ Y E +SP     SIR+LLA AA  D E+   D                      E  D  +V ++                                       V   A   +V++VDDIL    D   +      L   F +KD+G+A Y +G  I R+R  R +   Q LY+E ++KRFN+   K   +P   G   LSK   P+ PEE+++M   PY  A+G+LM+A   TRP+IA AV   +R+  NPGL H  A+  I +YL  TK+  + YGG    L ++ YTDSD  + +D R+S S  V +   GA+SW S
Sbjct:  241 SKSVSSTPYEIWHGRKPSLKHVKIWGCPAYIKK-LNTDKLETRSERGRFVGYPKDSFGYYFYLPTSQ-KVVISRDATFLEQQFVQ---------EGGKGRQIELELEN-------------------------SDQPTDQMDID--------------------------PSSQPIPVDETSTAVPRRTTRVSHPPVRYG--FLH------EEEQELSTHEEVDHGDDPLTYEEAISDVYSSK-------------WIDAMKSEIDSMYKNQVWDLVDPPEGIVPIGNKWVFKKKIGSDGKVETYKARLVAKGFRQRQGIDYEETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTTFLNGYIEENIFMEQPKGFESQDGSKVCKLKRSIYGLKQASRSWNIRFDEAIKSFGFIKNEDEPCVYKKVSDSAITFLVLYVDDILLMGNDTGMLTTIKVWLSNTFSMKDLGEATYILGIRIYRDRAKRIIGLSQSLYLEKVLKRFNMLDSKRGLLPVRHGIH-LSKEMSPKTPEERDKMARIPYASAIGSLMYAMLCTRPNIAYAVSLTSRYQSNPGLEHWIAIKNILKYLRRTKDLFLIYGGGD--LQLDGYTDSDFQSDIDDRKSTSRYVFICNGGAVSWKS 795          
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: A0A438E557_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E557_VITVI)

HSP 1 Score: 196 bits (498), Expect = 1.540e-51
Identity = 124/360 (34.44%), Postives = 191/360 (53.06%), Query Frame = 1
Query:  727 QAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQA---------------------DPRRVPEVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVKKEAKIPAASGAQTLSKADE------PQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
            Q  +S + ++W +A + EM  M +N V+D V  P+    IG K ++K K    G + +YK RLVA+GF Q EG+ Y E +SP  S  S R+++A  A  D EL   D + A                     D +++ E +     +++V++VDDIL  + D   ++     L  KF +KD+G+A + +G  I R+R    L   Q  Y++ ++ RF +        A G   ++K D+      P+N  EK++M+ FPY   VG+LM+A   TRPDIA  V  + R+  N G+ H K   ++ +YL  TK++ +TY  +   L +  Y+DSD   CLD+RRS SG + MLA GA+SW S
Sbjct:  220 QVKQSSDSEKWIEAMKDEMKSMKDNGVWDLVELPEGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLWEQI-----IILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSN-----CAPGDTPVAKGDKFSLHQCPKNELEKKDMERFPYASVVGSLMYAQVCTRPDIAYIVGMLGRYLSNLGMDHWKKAKRVMRYLQRTKDYMLTYR-RSSHLEIVGYSDSDFAGCLDSRRSTSGYIFMLAGGAVSWKS 568          
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: A0A438EN28_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EN28_VITVI)

HSP 1 Score: 196 bits (498), Expect = 3.210e-51
Identity = 134/381 (35.17%), Postives = 192/381 (50.39%), Query Frame = 1
Query:  706 SEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQA-------------DPRRVPEVVDGEAEMV----------------------VVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVKKEAKIPAASGAQTLSKADE------PQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
            ++P +  QAM   E + W  A + EM  M  N V+D V  P     IG K ++K K    G +E+YK RLVA+GF Q EG+ YTE +SP     S+R++LA  A  D EL+  D + A              P   P   DGE  +                       +V++VDDIL    D+  ++     L + F +KDMG+A Y +G  I R+R    L   Q  Y+  +++RF +K       +     + K D       P+N  E+E+MK  PY  AVG+LM+A   TRPDIA AV  + R+  NPG+ H KA  K+ +YL  TK++ + Y  +   L +  Y+DSD   C+D+R+S SG + +LA GAISW S
Sbjct:  236 NDPESFSQAMSCKESELWYNAMKDEMSSMKCNDVWDLVELPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSS-DGEQLVCKLKKSIYGLKQASRQCGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKN-----CSPSVSPIVKGDRFNLDQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYR-RTSNLEVVGYSDSDFAGCVDSRKSTSGYIFILAGGAISWRS 609          
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: A0A438FC14_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FC14_VITVI)

HSP 1 Score: 198 bits (504), Expect = 3.490e-51
Identity = 130/373 (34.85%), Postives = 195/373 (52.28%), Query Frame = 1
Query:  727 QAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQA---------------------DPRRVP-----EVVD--------GEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVKKEAKIPAASGAQTLSKADE------PQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
            Q  +S + ++W +A + EM  M +N V+D V  PK    IG K ++K K    G + +YK RLVA+GF Q EG+ Y E +SP  S  S R+++A  A  D EL   D + A                     D +++      E VD        G   +++V++VDDIL  + D   ++     L  KF +KD+G+A + +G  I R+R    L   Q  Y++ ++ RF +        A G   ++K D+      P+N  EK++M+ FPY  AVG+LM+A   TRPDIA  V  + R+  NPG+ H K   ++ +YL  TK++ +TY  +   L +  Y+DSD   CLD+RRS SG + MLA GA+SW S
Sbjct:  421 QVKQSSDSEKWIEAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKREHVDQCIYLKFSGSKFIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSN-----CAPGDTPVAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYR-RSSHLEIVGYSDSDFAGCLDSRRSTSGYIFMLAGGAVSWKS 787          
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: A0A2N9IFW4_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IFW4_FAGSY)

HSP 1 Score: 198 bits (503), Expect = 1.330e-50
Identity = 131/344 (38.08%), Postives = 194/344 (56.40%), Query Frame = 1
Query:  706 SEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQADPRRVPEVVDGEA--EMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVKKEAK--IPAASGAQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
            ++P   ++AM   + + W+KA E+EM  M  N V+  V +P+    IG K +YKRK+G  GKVE YK RLVA+G+ Q  G+ Y E +SP     SIR+LL+ AA  D E+   D + A        ++G    E+ +   V   ++ A+ +  M+     L   F +KD+G+A Y +G  + R+RK R L   Q  Y++ ++ RF+++   K   P   G   LSK   P+  EE+E+M+  PY  AVG+LM+A   TRPDI  AV  V+R+  NPG  H  AV  I +YL  TK + + +G +   L ++ YTDS+  + +D R+S+SG V  L KGAISW S
Sbjct:  546 NDPVTYQEAMNDKDVEHWKKAMESEMDSMYTNQVWTLVDKPEGIKPIGCKWIYKRKLGPTGKVETYKARLVAKGYTQKVGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTA-------FLNGNIREEIYMDQPVGFHISWARIKRAMSSIKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGVH-LSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKD--LNIQGYTDSNFQSDIDDRKSISGFVFTLGKGAISWRS 879          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438K5H3_VITVI7.820e-6430.58Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3MAN7_TRIPR5.400e-5434.08Retrotransposon protein putative Ty1-copia subclas... [more]
A0A438JH99_VITVI1.430e-5327.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GKY6_VITVI2.090e-5337.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9IUC8_FAGSY6.720e-5329.25Integrase catalytic domain-containing protein n=2 ... [more]
UPI001131160E3.870e-5227.93DDE-type integrase/transposase/recombinase n=2 Tax... [more]
A0A438E557_VITVI1.540e-5134.44Retrovirus-related Pol polyprotein from transposon... [more]
A0A438EN28_VITVI3.210e-5135.17Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FC14_VITVI3.490e-5134.85Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9IFW4_FAGSY1.330e-5038.08CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1207contigA-nodosum_M_contig1207:178959..180917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra85763
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1728
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.02e-51
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size1728
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866631.2617564-CDS-A-nodosum_M_contig1207:178958..1796061680866631.2617564-CDS-A-nodosum_M_contig1207:178958..179606Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1207 178959..179606 -
1680866631.2710943-CDS-A-nodosum_M_contig1207:179748..1797701680866631.2710943-CDS-A-nodosum_M_contig1207:179748..179770Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1207 179749..179770 -
1680866631.2798817-CDS-A-nodosum_M_contig1207:179808..1805801680866631.2798817-CDS-A-nodosum_M_contig1207:179808..180580Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1207 179809..180580 -
1680866631.2904744-CDS-A-nodosum_M_contig1207:180631..1809171680866631.2904744-CDS-A-nodosum_M_contig1207:180631..180917Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1207 180632..180917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1207.10.1prot_A-nodosum_M_contig1207.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1207 178959..180917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1207.10.1

>prot_A-nodosum_M_contig1207.10.1 ID=prot_A-nodosum_M_contig1207.10.1|Name=mRNA_A-nodosum_M_contig1207.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=576bp
VTTSTNEGKSPYELWFGKSPTAYHLRPFGTVGYARQSVREHKMAPKGEKC
VFMGIPRNFPTGTVSVLLVRSRNIVERQAVQWIDGPKKTGRDGTGSTPQL
NVQELGQEQHEHEWQEAISELEGETQGALSDHGEDTQEVLSEDEREQQHE
EEGAEARSASLEGPTVPALRKLAIDGNVPPILSSRTRSRKTPHRCGGGAL
HCFLPAIEAEEENGVEDVLACDDGGQMAMQATLDVSEPRNRRQAMESHEW
DEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEK
YKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA
EQADPRRVPEVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKL
KDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVKKEAKIPAAS
GAQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAV
ARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVG
ACLDTRRSVSGAVLMLAKGAISWHSR
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mRNA from alignment at A-nodosum_M_contig1207:178959..180917-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1207.10.1 ID=mRNA_A-nodosum_M_contig1207.10.1|Name=mRNA_A-nodosum_M_contig1207.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1959bp|location=Sequence derived from alignment at A-nodosum_M_contig1207:178959..180917- (Ascophyllum nodosum dioecious)
GTCACGACGTCAACGAATGAGGGTAAGTCGCCGTATGAACTGTGGTTCGG AAAATCCCCTACTGCATATCATTTGCGACCGTTTGGAACGGTGGGATACG CGCGACAGAGCGTGCGTGAACATAAGATGGCGCCAAAAGGAGAGAAATGC GTGTTCATGGGTATCCCCCGAAACTTCCCCACTGGCACGGTAAGCGTGCT ACTCGTAAGGTCTAGAAATATCGTGGAAAGGCAGGCCGTGCAGTGGATCG ATGGGCCTAAAAAGACAGGGAGAGACGGCACTGGCAGTGACGACCGCGGC ATGAAGCCGGCGGGAGGTGATATCATTGTTGAGAGAGGTACCCCGCAGCT CAACGTTCAGGAATTAGGACAGGAACAACACGAGCACGAGTGGCAGGAGG CGATTTCGGAACTCGAAGGGGAGACGCAGGGGGCGTTATCAGATCATGGG GAGGATACGCAGGAAGTGCTTTCGGAAGACGAGCGTGAGCAGCAGCATGA GGAAGAGGGAGCGGAAGCTAGGTCAGCAAGTTTGGAGGGACCGACCGTAC CCGCGCTGCGGAAACTCGCCATCGACGGCAATGTACCGCCCATACTGTCA TCACGTACTAGGAGTCGAAAAACCCCACACCGGTGTGGAGGGGGAGCGTT GCACTGTTTCTTGCCGGCGATCGAGGCCGAAGAAGAAAACGGCGTGGAGG ATGTGTTGGCATGCGACGACGGAGGCCAGATGGCGATGCAAGCGACGCTA GATGTATCAGAACCAAGGAATCGGCGACAGGCGATGGAATCGCATGAATG GGACGAATGGCGGAAGGCAGAAGAGACTGAGATGCTTGGAATGGTCGAGA ACTGCGTTTATGATCAGGTGGCTCGGCCGAAGGATAAGCTCGTGATCGGC ACGAAAATGTTGTACAAGCGAAAAATCGGGCAGGATGGCAAGGTCGAGAA GTACAAGTGTCGACTTGTCGCTCAAGGGTTCTGGCAGGTGGAAGGTGTGC ACTACACGGAAAAGTACTCGCCCACGCCATCAGCCGCGTCAATCCGGATG CTTTTGGCGACGGCAGCAGCCAAGGATGGGGAGCTGCGCCATTTCGACGC AGAGCAGGCGTTTTTGAAGGCGGATATTGACGAGGAGATATACATAGAGA TCCCCGAAGAGTTCCAGAAGTTTCCGGGGGCAGTGGGACAGCTTAATAAG GCCATTTACGGACTCGTGCAGGCGGGGAGGTGCTGGAATAATAAGTTCTG TGATGACATGACGGCGATTGGATTCGAGCAGGCAAAGGTGGACCCGTGCG TGTTCCGCAAGGTCGTTGACGGTGAGGCGGAGATGGTGGTGGTCGTGCAC GTAGACGACATCCTTGCCCACGCCAAAGACCAAGCAACGATGAACAGATT CGCGGCCGAGCTTGGGCGGAAGTTTAAGTTGAAGGACATGGGGGACGCCG AGTACTACATGGGTTGTCACATTACCAGGAACCGCAAGACGCGTGAATTA AAGTTCGACCAACACCTATATGTGGAGTCAATGGTAAAGAGATTCAATGT CAAGAAGGAAGCCAAAATACCGGCTGCGTCGGGGGCACAGACGCTCTCAA AGGCAGATGAGCCGCAAAATCCAGAGGAGAAGGAAGAGATGAAGATGTTC CCATACCGAGAGGCAGTGGGGGCACTCATGTGGGCGGCGACGATGACACG GCCGGATATCGCGTGCGCCGTACGCGCTGTAGCCAGGTTCTGCGAAAACC CTGGGCTGGCACACAAGAAGGCAGTGATGAAGATCTTCCAGTATCTTCTG CACACGAAAGAATGGGGGATTACGTACGGTGGACAGGGCTGTGGACTCTG CATGGAGGCATACACGGATTCGGATGTCGGAGCCTGCCTTGACACAAGAC GATCGGTTTCAGGTGCGGTGTTGATGTTGGCCAAGGGAGCGATCAGTTGG CACTCGAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1207:178959..180917-

>mRNA_A-nodosum_M_contig1207.10.1 ID=mRNA_A-nodosum_M_contig1207.10.1|Name=mRNA_A-nodosum_M_contig1207.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1728bp|location=Sequence derived from alignment at A-nodosum_M_contig1207:178959..180917- (Ascophyllum nodosum dioecious)
GTCACGACGTCAACGAATGAGGGTAAGTCGCCGTATGAACTGTGGTTCGG
AAAATCCCCTACTGCATATCATTTGCGACCGTTTGGAACGGTGGGATACG
CGCGACAGAGCGTGCGTGAACATAAGATGGCGCCAAAAGGAGAGAAATGC
GTGTTCATGGGTATCCCCCGAAACTTCCCCACTGGCACGGTAAGCGTGCT
ACTCGTAAGGTCTAGAAATATCGTGGAAAGGCAGGCCGTGCAGTGGATCG
ATGGGCCTAAAAAGACAGGGAGAGACGGCACTGGCAGTACCCCGCAGCTC
AACGTTCAGGAATTAGGACAGGAACAACACGAGCACGAGTGGCAGGAGGC
GATTTCGGAACTCGAAGGGGAGACGCAGGGGGCGTTATCAGATCATGGGG
AGGATACGCAGGAAGTGCTTTCGGAAGACGAGCGTGAGCAGCAGCATGAG
GAAGAGGGAGCGGAAGCTAGGTCAGCAAGTTTGGAGGGACCGACCGTACC
CGCGCTGCGGAAACTCGCCATCGACGGCAATGTACCGCCCATACTGTCAT
CACGTACTAGGAGTCGAAAAACCCCACACCGGTGTGGAGGGGGAGCGTTG
CACTGTTTCTTGCCGGCGATCGAGGCCGAAGAAGAAAACGGCGTGGAGGA
TGTGTTGGCATGCGACGACGGAGGCCAGATGGCGATGCAAGCGACGCTAG
ATGTATCAGAACCAAGGAATCGGCGACAGGCGATGGAATCGCATGAATGG
GACGAATGGCGGAAGGCAGAAGAGACTGAGATGCTTGGAATGGTCGAGAA
CTGCGTTTATGATCAGGTGGCTCGGCCGAAGGATAAGCTCGTGATCGGCA
CGAAAATGTTGTACAAGCGAAAAATCGGGCAGGATGGCAAGGTCGAGAAG
TACAAGTGTCGACTTGTCGCTCAAGGGTTCTGGCAGGTGGAAGGTGTGCA
CTACACGGAAAAGTACTCGCCCACGCCATCAGCCGCGTCAATCCGGATGC
TTTTGGCGACGGCAGCAGCCAAGGATGGGGAGCTGCGCCATTTCGACGCA
GAGCAGGCAGATCCCCGAAGAGTTCCAGAAGTCGTTGACGGTGAGGCGGA
GATGGTGGTGGTCGTGCACGTAGACGACATCCTTGCCCACGCCAAAGACC
AAGCAACGATGAACAGATTCGCGGCCGAGCTTGGGCGGAAGTTTAAGTTG
AAGGACATGGGGGACGCCGAGTACTACATGGGTTGTCACATTACCAGGAA
CCGCAAGACGCGTGAATTAAAGTTCGACCAACACCTATATGTGGAGTCAA
TGGTAAAGAGATTCAATGTCAAGAAGGAAGCCAAAATACCGGCTGCGTCG
GGGGCACAGACGCTCTCAAAGGCAGATGAGCCGCAAAATCCAGAGGAGAA
GGAAGAGATGAAGATGTTCCCATACCGAGAGGCAGTGGGGGCACTCATGT
GGGCGGCGACGATGACACGGCCGGATATCGCGTGCGCCGTACGCGCTGTA
GCCAGGTTCTGCGAAAACCCTGGGCTGGCACACAAGAAGGCAGTGATGAA
GATCTTCCAGTATCTTCTGCACACGAAAGAATGGGGGATTACGTACGGTG
GACAGGGCTGTGGACTCTGCATGGAGGCATACACGGATTCGGATGTCGGA
GCCTGCCTTGACACAAGACGATCGGTTTCAGGTGCGGTGTTGATGTTGGC
CAAGGGAGCGATCAGTTGGCACTCGAGG
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