mRNA_A-nodosum_M_contig1163.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1163.8.1
Unique NamemRNA_A-nodosum_M_contig1163.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1163.8.1 vs. uniprot
Match: A0A6H5KM79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM79_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 2.370e-92
Identity = 197/452 (43.58%), Postives = 255/452 (56.42%), Query Frame = 1 
Query:  226 GLTTLSSFNPFINPTFYSTDGNARALRATTPSARF-VLEARQLSPSKRCLTPEHERAALGCESPGPGSYYPLLTAGGFPPPEHWIGVNKTLRTPR----RGFITKPSWGEPSSPARPPDSARSTTSFKTMGRALMVKKGALLSRTTSPRCAWVTGVSTPRGLQSWGDIAQETGLMKNG-RGFDFSPRPQPPNPGRRSSARRGPVHSGEPRATSPDFREVRFLNHDLMKQSAGTANDTPGPGAYDVRPSMSSGTTFAGPR--PKSSRNVTVSTVIARAEWKA-----TGDVVHTTAVGNRYWPCLSPRRSNRLQSPLRGADSPGPAYCLPSDFDLKRPNKHSFSPPRCKPKSRTLTVGKSRKRG-----RLA------GSAGANDLSVLSRAREEMQRHSTEEAEGECGGDNALGVLVNTSMGKGILLQVRPNYVRLVQLPWGLLFTTEVLTH 1509
            GLT+LS+ N F++P  Y+T    RA++   P+A    LE+R LSPS RCLTP HER A G +SPGP  YYP   A  F PP+HW  VNK+ +  R    R F  K +WGE + P RPP+  ++        RA + K+      +T+PRC W+ GV+T  GLQ+WGD+A  TG +  G +G   SP  +P       S RRGP+HS E RATSP FRE R+LN DL ++ A  A DTPGPG Y +RP +  GT+FAGPR   K S+  TV+ ++A A+ +A     T    +    G       S   S RL  PL+G +SPGPAY LPSDFD K  NK +F PPRC   + T   G    RG      LA      G   A     L +AR E       ++        ALGV VNT MG+GILL++R + +  V+LPWG+L+TTEVLTH
Sbjct:  110 GLTSLSAGNAFVSPATYTTQPGERAVKEKAPAAVVNTLESRYLSPSTRCLTPSHEREAKGAQSPGPAVYYPH-EAWDFGPPKHWNRVNKSDKPGRMPSSRSFNAKVTWGEATMP-RPPNPVKAAQIPTKEERAWLSKRRGTARPSTAPRCMWLNGVNTRGGLQAWGDVATNTGPIHVGNKGNCASPWDRPTPRRGPDSQRRGPIHSREVRATSPGFRETRYLNRDLTRKGACKATDTPGPGQYSIRPPLERGTSFAGPRRPTKCSKAATVNAMVASAKGRAASYEKTSGAKNGMVRGGDRQSRPSTAPSQRLSIPLKGRESPGPAYALPSDFDQKFVNKKTFHPPRC---TGTSPFGTEEPRGTGRSANLAPRADEDGHVRAKQTKRLPKARREASSGPVAKSGRVDAIGRALGVPVNTCMGRGILLRIRADGMTFVRLPWGVLYTTEVLTH 556
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1163.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KM79_9PHAE2.370e-9243.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1163contigA-nodosum_M_contig1163:107572..111126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1512
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-20_004790.1
Cds size1512
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866569.1776934-CDS-A-nodosum_M_contig1163:107571..1077961680866569.1776934-CDS-A-nodosum_M_contig1163:107571..107796Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1163 107572..107796 +
1680866569.188104-CDS-A-nodosum_M_contig1163:109303..1093901680866569.188104-CDS-A-nodosum_M_contig1163:109303..109390Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1163 109304..109390 +
1680866569.199707-CDS-A-nodosum_M_contig1163:109591..1099441680866569.199707-CDS-A-nodosum_M_contig1163:109591..109944Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1163 109592..109944 +
1680866569.2085814-CDS-A-nodosum_M_contig1163:110279..1111261680866569.2085814-CDS-A-nodosum_M_contig1163:110279..111126Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1163 110280..111126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1163.8.1prot_A-nodosum_M_contig1163.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1163 107572..111126 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1163.8.1

>prot_A-nodosum_M_contig1163.8.1 ID=prot_A-nodosum_M_contig1163.8.1|Name=mRNA_A-nodosum_M_contig1163.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=504bp
MVIFGAHHTAKRFDGVEGTNESPGPGAYSWKSSLTGAPAPRYFARLMEEG
NLRPDGSPVLFTERDSWIRGIMAPKGLTTLSSFNPFINPTFYSTDGNARA
LRATTPSARFVLEARQLSPSKRCLTPEHERAALGCESPGPGSYYPLLTAG
GFPPPEHWIGVNKTLRTPRRGFITKPSWGEPSSPARPPDSARSTTSFKTM
GRALMVKKGALLSRTTSPRCAWVTGVSTPRGLQSWGDIAQETGLMKNGRG
FDFSPRPQPPNPGRRSSARRGPVHSGEPRATSPDFREVRFLNHDLMKQSA
GTANDTPGPGAYDVRPSMSSGTTFAGPRPKSSRNVTVSTVIARAEWKATG
DVVHTTAVGNRYWPCLSPRRSNRLQSPLRGADSPGPAYCLPSDFDLKRPN
KHSFSPPRCKPKSRTLTVGKSRKRGRLAGSAGANDLSVLSRAREEMQRHS
TEEAEGECGGDNALGVLVNTSMGKGILLQVRPNYVRLVQLPWGLLFTTEV
LTH*
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mRNA from alignment at A-nodosum_M_contig1163:107572..111126+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1163.8.1 ID=mRNA_A-nodosum_M_contig1163.8.1|Name=mRNA_A-nodosum_M_contig1163.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3555bp|location=Sequence derived from alignment at A-nodosum_M_contig1163:107572..111126+ (Ascophyllum nodosum dioecious)
ATGGTGATATTCGGAGCTCATCACACGGCGAAGAGGTTTGACGGCGTTGA
GGGCACAAACGAGTCCCCTGGTCCTGGTGCATACTCGTGGAAGTCTTCGC
TCACGGGTGCTCCCGCTCCACGGTACTTCGCGAGGCTTATGGAGGAAGGC
AACCTCCGTCCAGACGGAAGCCCGGTTCTCTTTACAGAAAGAGACTCGTG
GATCAGAGGCATAATGGCTCCAAAGGTGGGCCAAGGTCGAACGAGAGCCA
ATGCGGCTGTCTTGTTGCTTTGCCCTAAACACCTCTGACTCACCTGGTTA
CACCGATAGTGGGTGTGGGAAAAAAGGGGCGTACAAAAATTGATCTCTGG
GGTTTTTCGAATAGACAGCACCTGTTACTCGAGCTACCTTGAGGGCTACT
GACTCTGTGACGGCGGACTCTCGGCAGTGAACAACATGGATACGCAATTG
CGTGACCTGACAAACTCGGGACTGACTCGATGGCGGTTGATAGTAAAAAC
AAATGGACGCCGTCTCGGAAAGCGGGAGGAATCCTGTGAGAAAGCACCAG
GTTCAGCCTGAGTGCGGAGAATGAGAAGGGTGACGACGGACCGGACGGCT
GAATCCGTCTCGCGAGACCAAATTCTCAGGCAATAATCCTACTCAGCTGA
CTACGAGCAGGATTGCTGCCAATCTTACCCGGTTGATCCATACTCTGCTA
TAAGTGATGACTATACATACATTGCGTTCGTTGTTTTCCCGAGAAACATG
AAACCTCGAGTAATTCCTCTTGTAAAGCGCATCTCGATCCCGCAGAGTGG
CTTAGAGTCTGGTGCGCGCATCTTGGTGGGAGGGAAGATTCTCCAGCATA
CAGTACCCGAAGTTGACTTGCGTGACCCAAGATAATGCAGTGGCTTCTGG
CGGACGATACCGCTATACTACTTCACCGCCGCAGTTATCAAGACGCTTTT
TTTTTCAGTTTGGGAACTAAATAGTTTCAGCGATTTGGAGATGCTCGAAA
AAGTAGGTTGAAAATGAATTGCCTTTTCTCAACTGGGTCACGCCAACCCA
GCCATCGATAGCTTCTGCTGTATAGCACAACAGGCTGACTTGTAAGCCCG
AGGACCGCCAACTAATTGGCAACGGACGTGCAAAGTTTCAGACAAGGAGG
TAGTATTCCGATACAGTCACGGCGACAATCGGCACGGAAGAGAAAAAAAA
TGATCTGCTCGCCATGAGAGAGCACGCACGTAGTCACAAGTCGAAAGCTG
CTCTAGGCAACGTAACGACACGGGTGCTTCAGATCTCTCCGTAATACAGT
AGATACTTTTGACGGTCAACGCCAACTTTCAGATCATTAGGCGCTTGTAG
CCGTCATGGCAGTGATTTCTTTGCAACGCGCCTTCTCTAAAAGACCCCCA
AGAACCCCCCGGAGGCCCGGAGGGTGTTCGTGCGAGTGTAAGGCCTCAGC
TAGCGTCATTTCTTAGTTTACAAGATTTCGAAGCTCCAGAATCTGAAACG
AACTTATTTCGGAAAACGGTACGCAACTCCAATCGTTTTCAGTCTTTGGA
AATAACGCTCCCGAAAAACCTTACCAGGTGCACAATTTCGAACCGTTTTA
AAGTTTGGGTATTTTCGGCCGCGTTTAAGCCGATTTTTAGTACCAGAATC
AAACCAACAGGTGTGCTTGCATGTTCAGAACGTACAGGCGTAACCCACGA
CACGATCGTGGCTACTGCTCGACAAAACGCAGGGACTCACAACACTGTCG
AGCTTCAACCCCTTCATCAACCCGACGTTTTATTCAACGGACGGTAACGC
CCGCGCCCTCCGAGCAACGGTAAGCGAAGGATCAATCTCGTTCGGGGTTA
GTTTGGATATCATCTTCTTGAGAGGTGATGTCACGTTTATCTTCTCCTAA
GCATCGTTCCCATACTGGTATAAAATGAAAAACTGCCAAGCGTCGTAGAG
CAGCTCTGCCCCTGCACCGTCGATGACGTAGCATCCCCTCCCCACGTCTT
CTGCCAAATCTTTCTCGCAGACACCCTCTGCACGCTTCGTCCTCGAGGCG
CGTCAACTAAGTCCGTCAAAGCGCTGTCTTACTCCGGAGCACGAGCGGGC
GGCCCTGGGCTGTGAGAGTCCGGGACCTGGAAGCTACTATCCCCTGCTTA
CCGCGGGGGGCTTCCCACCACCAGAGCATTGGATCGGTGTGAACAAAACG
TTAAGGACTCCGCGAAGAGGCTTTATCACAAAGCCGTCATGGGGTGAACC
TAGTTCACCGGCACGTCCACCCGACTCGGCAAGATCCACCACAAGTTTCA
AGACAATGGGACGAGCTTTGATGGTCAAGAAGGGAGCGCTGCTGAGTCGG
ACTACCTCGCCACGATGCGCATGGTAAATTATTTGCGATTTCATCATGAC
ATGGGAGCGACAGGCCTCGGGGGAAGCGGGACTGGACGTCGCATATTCCT
GTATATGGTCATCCAGATCATATTATATATTAGTATTATCGCGATTCGTA
CGTTTGGGGACATAGGAGCGACTCGTGTGGTCAGTTTTCCGTACCAGACC
TGGAGCGTAACTATACACCTGCGTATGCCTGATTAGGTAGAATTTTCTAC
GATAAAGAGTTGAAAATATGTCTTCACGCTCTGGAGGCGAACTTGACAGG
CAAAACTAAACACAACCCCCGTCTAAATTAGCCGCCTTTTTCCTAAACGC
TCTGGAAGGGTGACCGGCGTGAGCACTCCAAGAGGACTTCAATCGTGGGG
CGACATTGCCCAAGAAACGGGTTTGATGAAGAATGGTCGTGGGTTCGATT
TCTCTCCGAGACCACAGCCTCCGAATCCCGGACGTCGTTCGTCAGCACGC
CGAGGCCCGGTACATAGTGGTGAGCCTCGGGCAACCTCGCCAGACTTCCG
AGAGGTCCGGTTTCTGAATCACGATCTCATGAAGCAGAGTGCTGGTACTG
CCAATGATACGCCGGGTCCTGGGGCTTACGACGTGCGTCCGAGCATGAGC
TCTGGTACCACGTTTGCCGGGCCTCGACCTAAGAGCAGCAGGAACGTGAC
TGTGTCTACGGTCATAGCGCGCGCGGAATGGAAGGCGACAGGCGACGTCG
TGCACACCACGGCGGTGGGGAATCGGTACTGGCCGTGTCTTTCTCCTCGG
CGCTCGAATCGATTACAGTCACCGCTCCGCGGGGCGGACAGCCCCGGTCC
AGCGTATTGCTTGCCGAGCGACTTTGACCTCAAGCGGCCGAACAAGCACT
CTTTTTCCCCCCCAAGATGTAAGCCAAAGTCCAGAACGCTTACCGTGGGA
AAGTCGCGGAAACGGGGGCGTCTTGCAGGCTCGGCGGGCGCGAACGATCT
GAGCGTACTGTCGCGTGCTCGAGAGGAAATGCAGCGTCATTCGACCGAGG
AGGCGGAAGGAGAGTGCGGTGGCGATAACGCGCTAGGCGTGCTCGTCAAC
ACGTCCATGGGGAAGGGGATCTTATTGCAGGTTCGCCCGAACTATGTGCG
TTTGGTTCAGCTCCCGTGGGGTCTGTTGTTTACGACGGAGGTGCTGACAC
ACTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1163:107572..111126+

>mRNA_A-nodosum_M_contig1163.8.1 ID=mRNA_A-nodosum_M_contig1163.8.1|Name=mRNA_A-nodosum_M_contig1163.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at A-nodosum_M_contig1163:107572..111126+ (Ascophyllum nodosum dioecious)
ATGGTGATATTCGGAGCTCATCACACGGCGAAGAGGTTTGACGGCGTTGA
GGGCACAAACGAGTCCCCTGGTCCTGGTGCATACTCGTGGAAGTCTTCGC
TCACGGGTGCTCCCGCTCCACGGTACTTCGCGAGGCTTATGGAGGAAGGC
AACCTCCGTCCAGACGGAAGCCCGGTTCTCTTTACAGAAAGAGACTCGTG
GATCAGAGGCATAATGGCTCCAAAGGGACTCACAACACTGTCGAGCTTCA
ACCCCTTCATCAACCCGACGTTTTATTCAACGGACGGTAACGCCCGCGCC
CTCCGAGCAACGACACCCTCTGCACGCTTCGTCCTCGAGGCGCGTCAACT
AAGTCCGTCAAAGCGCTGTCTTACTCCGGAGCACGAGCGGGCGGCCCTGG
GCTGTGAGAGTCCGGGACCTGGAAGCTACTATCCCCTGCTTACCGCGGGG
GGCTTCCCACCACCAGAGCATTGGATCGGTGTGAACAAAACGTTAAGGAC
TCCGCGAAGAGGCTTTATCACAAAGCCGTCATGGGGTGAACCTAGTTCAC
CGGCACGTCCACCCGACTCGGCAAGATCCACCACAAGTTTCAAGACAATG
GGACGAGCTTTGATGGTCAAGAAGGGAGCGCTGCTGAGTCGGACTACCTC
GCCACGATGCGCATGGGTGACCGGCGTGAGCACTCCAAGAGGACTTCAAT
CGTGGGGCGACATTGCCCAAGAAACGGGTTTGATGAAGAATGGTCGTGGG
TTCGATTTCTCTCCGAGACCACAGCCTCCGAATCCCGGACGTCGTTCGTC
AGCACGCCGAGGCCCGGTACATAGTGGTGAGCCTCGGGCAACCTCGCCAG
ACTTCCGAGAGGTCCGGTTTCTGAATCACGATCTCATGAAGCAGAGTGCT
GGTACTGCCAATGATACGCCGGGTCCTGGGGCTTACGACGTGCGTCCGAG
CATGAGCTCTGGTACCACGTTTGCCGGGCCTCGACCTAAGAGCAGCAGGA
ACGTGACTGTGTCTACGGTCATAGCGCGCGCGGAATGGAAGGCGACAGGC
GACGTCGTGCACACCACGGCGGTGGGGAATCGGTACTGGCCGTGTCTTTC
TCCTCGGCGCTCGAATCGATTACAGTCACCGCTCCGCGGGGCGGACAGCC
CCGGTCCAGCGTATTGCTTGCCGAGCGACTTTGACCTCAAGCGGCCGAAC
AAGCACTCTTTTTCCCCCCCAAGATGTAAGCCAAAGTCCAGAACGCTTAC
CGTGGGAAAGTCGCGGAAACGGGGGCGTCTTGCAGGCTCGGCGGGCGCGA
ACGATCTGAGCGTACTGTCGCGTGCTCGAGAGGAAATGCAGCGTCATTCG
ACCGAGGAGGCGGAAGGAGAGTGCGGTGGCGATAACGCGCTAGGCGTGCT
CGTCAACACGTCCATGGGGAAGGGGATCTTATTGCAGGTTCGCCCGAACT
ATGTGCGTTTGGTTCAGCTCCCGTGGGGTCTGTTGTTTACGACGGAGGTG
CTGACACACTGA
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