mRNA_A-nodosum_M_contig11352.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11352.1.1
Unique NamemRNA_A-nodosum_M_contig11352.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig11352.1.1 vs. uniprot
Match: A0A4U8UIT5_STECR (Histone domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U8UIT5_STECR)

HSP 1 Score: 141 bits (356), Expect = 5.460e-41
Identity = 86/130 (66.15%), Postives = 97/130 (74.62%), Query Frame = 1 
Query:    4 MARTKQTARKSTGGKAPTQAAGH-KGCPQVCSRHRWCEKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFR-----ERSALPRLCRSGPSGSRRGPRGLVRTHEPVRHPCEARHHYAQGH 375
            MARTKQTARKSTGGKAP + +   +GCPQV +RHR  +KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF+     + S + R C   P   R  PR  +R H+ VRH  +A  HYAQGH
Sbjct:    1 MARTKQTARKSTGGKAPRKQSNWLEGCPQVGARHR--KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSVVRRAC--PPGICRSLPRRPLRGHQLVRHSRQASDHYAQGH 126
[Close]
BLAST of mRNA_A-nodosum_M_contig11352.1.1 vs. uniprot
Match: A0A3R7NWW4_PENVA (Histone domain-containing protein n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7NWW4_PENVA)

HSP 1 Score: 142 bits (357), Expect = 7.740e-41
Identity = 83/124 (66.94%), Postives = 92/124 (74.19%), Query Frame = 1 
Query:    4 MARTKQTARKSTGGKAPTQAAGHKGCPQVCSRHRWCEKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFRERSALPRLCRSGPSGSRRG-PRGLVRTHEPVRHPCEARHHYAQG 372
            MARTKQTARKSTGGKAP +    K   +        +KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF+    LP LC  G +GS RG P   +R H+PVRHP +A +HYAQG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT-DPLPVLCCHGSAGSLRGLPGRPLRGHQPVRHPRQACNHYAQG 123
[Close]
BLAST of mRNA_A-nodosum_M_contig11352.1.1 vs. uniprot
Match: A0A1Z5LBX3_ORNMO (Histone H3 (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5LBX3_ORNMO)

HSP 1 Score: 141 bits (356), Expect = 6.110e-40
Identity = 84/139 (60.43%), Postives = 95/139 (68.35%), Query Frame = 1 
Query:    4 MARTKQTARKSTGGKAPTQAAGHKGCPQVCSRHRWCEKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFR---------------ERSALPRLCRSGPSGSRRG-PRGLVRTHEPVRHPCEARHHYAQG 372
            MARTKQTARKSTGGKAP +    K   +        +KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF+                 S+LP L R G +G +R  PR  VR H+PVRHP +ARHH+A+G
Sbjct:    1 MARTKQTARKSTGGKAPRKHLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMAARHRGSSLPELRRDGSAGGQRSLPRRPVRRHQPVRHPRQARHHHAKG 139
[Close]
BLAST of mRNA_A-nodosum_M_contig11352.1.1 vs. uniprot
Match: A0A3Q2CVD4_CYPVA (Histone H3.3 n=1 Tax=Cyprinodon variegatus TaxID=28743 RepID=A0A3Q2CVD4_CYPVA)

HSP 1 Score: 135 bits (340), Expect = 3.840e-38
Identity = 87/153 (56.86%), Postives = 94/153 (61.44%), Query Frame = 1 
Query:    4 MARTKQTARKSTGGKAPTQAAGHKGCPQVCSRHRWCEKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF----------------------RERSAL-------PRLCRSGPSGSRRGPRGLVRTHEPVRHPCEARHHYAQGH 375
            MARTKQTARKSTGGKAP +    K   +        +KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF                      R  SAL       P LC +G  G R  P G VR H+PVRHP +ARHH+AQ H
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQVNKPLDHRRPSALTQTPDPNPLLCSAG--GQRGLPGGAVRGHQPVRHPRQARHHHAQRH 151
[Close]
BLAST of mRNA_A-nodosum_M_contig11352.1.1 vs. uniprot
Match: B8A6X4_ORYSI (Histone domain-containing protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=B8A6X4_ORYSI)

HSP 1 Score: 134 bits (338), Expect = 6.470e-38
Identity = 75/124 (60.48%), Postives = 88/124 (70.97%), Query Frame = 1 
Query:    4 MARTKQTARKSTGGKAPTQAAGHKGCPQVCSRHRWCEKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFRERSALPRLCRSGPSGSRRGPRGLVRTHEPVRHPCEARHHYAQGH 375
            MARTKQTARKSTGGKAP +    K   +        +KPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDF+          +    + R PR  +R H+P+RHP +ARHH+AQGH
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAPRLPRRALRGHQPLRHPRQARHHHAQGH 124
[Close]
BLAST of mRNA_A-nodosum_M_contig11352.1.1 vs. uniprot
Match: A0A3P8UEV8_AMPPE (Histone domain-containing protein n=1 Tax=Amphiprion percula TaxID=161767 RepID=A0A3P8UEV8_AMPPE)

HSP 1 Score: 133 bits (335), Expect = 9.050e-37
Identity = 78/127 (61.42%), Postives = 90/127 (70.87%), Query Frame = 1 
Query:    4 MARTKQTARKSTGGKAPTQAAGHKGCPQ--VCSRHRWCEKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFRERSALPRLCRSGPSGSRRG-PRGLVRTHEPVRHPCEARHHYAQGH 375
            MARTKQTARKSTGGKAP +    +   +    +     +KPHRYRPGT ALRE+RRYQKSTELLIRK PFQRLVREIAQDF++R ALP L R G  G +RG P   +R H  VRHP +  HH+AQ H
Sbjct:    1 MARTKQTARKSTGGKAPRKQLAAEAARKSATATATGGVKKPHRYRPGTEALREVRRYQKSTELLIRKPPFQRLVREIAQDFQDRPALPELRRHGSVGGQRGLPGRTLRGHRSVRHPRQEGHHHAQRH 127
[Close]
BLAST of mRNA_A-nodosum_M_contig11352.1.1 vs. uniprot
Match: W5NRH6_SHEEP (Histone domain-containing protein n=1 Tax=Ovis aries TaxID=9940 RepID=W5NRH6_SHEEP)

HSP 1 Score: 132 bits (331), Expect = 1.980e-36
Identity = 78/126 (61.90%), Postives = 89/126 (70.63%), Query Frame = 1 
Query:    1 LMARTKQTARKSTGGKAPTQAAGHKGCPQVCSRHRWCEKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFRERSALPRLCRSGPSGSRRG-PRGLVRTHEPVRHPCEARHHYAQGH 375
            +MARTKQTARKSTGGKAP +    K   +        +KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL     +      ALP+L   G +GS RG P G +R H+PVRHP +ARHH+AQGH
Sbjct:   40 VMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL----GEGDGVGPALPKLGCDGAAGSVRGLPGGALRGHQPVRHPRQARHHHAQGH 161
[Close]
BLAST of mRNA_A-nodosum_M_contig11352.1.1 vs. uniprot
Match: A0A4U5LP26_STECR (Histone domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5LP26_STECR)

HSP 1 Score: 129 bits (325), Expect = 5.230e-36
Identity = 80/126 (63.49%), Postives = 89/126 (70.63%), Query Frame = 1 
Query:    4 MARTKQTARKSTGGKAPTQAAGHKGCPQVCSRHRWCEKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFR-ERSALPRLCRSGPSGSRRG-PRGLVRTHEPVRHPCEARHHYAQGH 375
            MARTKQTARKSTGGKAP +    K   +        +KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF+ +      LC   PS S R  PR  +R H+ VRHP +A HH+AQ H
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSLC--SPSRSPRSLPRRPLRGHQLVRHPRQASHHHAQRH 124
[Close]
BLAST of mRNA_A-nodosum_M_contig11352.1.1 vs. uniprot
Match: A0A8D1S2G1_PIG (Histone domain-containing protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1S2G1_PIG)

HSP 1 Score: 129 bits (323), Expect = 1.080e-35
Identity = 75/123 (60.98%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:    4 MARTKQTARKSTGGKAPTQAAGHKGCPQVCSRHRWCEKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFRERSALPRLCRSGPSGSRRGPRGLVRTHEPVRHPCEARHHYAQG 372
            MARTKQTARKSTGGKAP +    K   +        +KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF+              G R  P G +R H+PV HP +A H++AQG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALRGVRGLPGGALRGHQPVCHPRQACHYHAQG 123
[Close]
BLAST of mRNA_A-nodosum_M_contig11352.1.1 vs. uniprot
Match: G1NH17_MELGA (Histone H3 n=1 Tax=Meleagris gallopavo TaxID=9103 RepID=G1NH17_MELGA)

HSP 1 Score: 124 bits (310), Expect = 5.310e-34
Identity = 75/124 (60.48%), Postives = 86/124 (69.35%), Query Frame = 1 
Query:    4 MARTKQTARKSTGGKAPTQAAGHKGCPQVCSRHRWCEKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFR-----ERSALPRLCRSGPSGSRRGPRGLVRTHEPVRHPCEARHH 360
            MARTKQTARKSTGGKAP +    K   +        +KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF+     + SA+  L  +  +       G +R H+PVRHP +ARHH
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV----GALRGHQPVRHPRQARHH 120
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11352.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4U8UIT5_STECR5.460e-4166.15Histone domain-containing protein n=1 Tax=Steinern... [more]
A0A3R7NWW4_PENVA7.740e-4166.94Histone domain-containing protein n=1 Tax=Penaeus ... [more]
A0A1Z5LBX3_ORNMO6.110e-4060.43Histone H3 (Fragment) n=1 Tax=Ornithodoros moubata... [more]
A0A3Q2CVD4_CYPVA3.840e-3856.86Histone H3.3 n=1 Tax=Cyprinodon variegatus TaxID=2... [more]
B8A6X4_ORYSI6.470e-3860.48Histone domain-containing protein n=1 Tax=Oryza sa... [more]
A0A3P8UEV8_AMPPE9.050e-3761.42Histone domain-containing protein n=1 Tax=Amphipri... [more]
W5NRH6_SHEEP1.980e-3661.90Histone domain-containing protein n=1 Tax=Ovis ari... [more]
A0A4U5LP26_STECR5.230e-3663.49Histone domain-containing protein n=1 Tax=Steinern... [more]
A0A8D1S2G1_PIG1.080e-3560.98Histone domain-containing protein n=1 Tax=Sus scro... [more]
G1NH17_MELGA5.310e-3460.48Histone H3 n=1 Tax=Meleagris gallopavo TaxID=9103 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11352contigA-nodosum_M_contig11352:8978..9352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog9940.ENSOARP00000000766
PFAMsCENP-T_C,Histone
Model size375
Max annot lvl33208|Metazoa
KEGG koko:K11253,ko:K11254
KEGG Pathwayko05034,ko05202,ko05203,ko05322,map05034,map05202,map05203,map05322
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.88e-37
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota,39ZTV@33154|Opisthokonta,3BPDH@33208|Metazoa,3D6BK@33213|Bilateria
Descriptionnucleosomal DNA binding
Cds size372
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866540.315279-UTR-A-nodosum_M_contig11352:8977..89801680866540.315279-UTR-A-nodosum_M_contig11352:8977..8980Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11352 8978..8980 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866540.3290823-CDS-A-nodosum_M_contig11352:8980..93521680866540.3290823-CDS-A-nodosum_M_contig11352:8980..9352Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11352 8981..9352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11352.1.1prot_A-nodosum_M_contig11352.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11352 8981..9352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11352.1.1

>prot_A-nodosum_M_contig11352.1.1 ID=prot_A-nodosum_M_contig11352.1.1|Name=mRNA_A-nodosum_M_contig11352.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=124bp
MARTKQTARKSTGGKAPTQAAGHKGCPQVCSRHRWCEKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFRERSALPRLCRSGPSGSRRGP
RGLVRTHEPVRHPCEARHHYAQGH
back to top

mRNA from alignment at A-nodosum_M_contig11352:8978..9352+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11352.1.1 ID=mRNA_A-nodosum_M_contig11352.1.1|Name=mRNA_A-nodosum_M_contig11352.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at A-nodosum_M_contig11352:8978..9352+ (Ascophyllum nodosum dioecious)
CTAATGGCTCGCACCAAGCAGACCGCTCGTAAGTCTACCGGAGGCAAGGC
CCCCACGCAAGCAGCTGGCCACAAAGGCTGCCCGCAAGTCTGCTCCCGCC
ACCGGTGGTGTGAAAAGCCCCACCGATACAGGCCCGGAACCGTCGCCCTA
CGCGAGATCCGCCGTTACCAGAAGTCTACGGAGCTCTTGATCCGTAAGCT
GCCCTTCCAGCGCCTGGTTCGCGAAATCGCCCAAGACTTCAGAGAGCGAT
CTGCGCTTCCAAGGCTCTGCCGTTCTGGCCCTTCAGGAAGCCGCCGAGGG
CCTCGTGGGCTTGTTCGAACACACGAACCTGTGCGCCATCCATGCGAAGC
GCGTCACCATTATGCCCAAGGACAT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig11352:8978..9352+

>mRNA_A-nodosum_M_contig11352.1.1 ID=mRNA_A-nodosum_M_contig11352.1.1|Name=mRNA_A-nodosum_M_contig11352.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at A-nodosum_M_contig11352:8978..9352+ (Ascophyllum nodosum dioecious)
ATGGCTCGCACCAAGCAGACCGCTCGTAAGTCTACCGGAGGCAAGGCCCC
CACGCAAGCAGCTGGCCACAAAGGCTGCCCGCAAGTCTGCTCCCGCCACC
GGTGGTGTGAAAAGCCCCACCGATACAGGCCCGGAACCGTCGCCCTACGC
GAGATCCGCCGTTACCAGAAGTCTACGGAGCTCTTGATCCGTAAGCTGCC
CTTCCAGCGCCTGGTTCGCGAAATCGCCCAAGACTTCAGAGAGCGATCTG
CGCTTCCAAGGCTCTGCCGTTCTGGCCCTTCAGGAAGCCGCCGAGGGCCT
CGTGGGCTTGTTCGAACACACGAACCTGTGCGCCATCCATGCGAAGCGCG
TCACCATTATGCCCAAGGACAT
back to top