mRNA_A-nodosum_M_contig1128.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1128.5.1
Unique NamemRNA_A-nodosum_M_contig1128.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1128.5.1 vs. uniprot
Match: A0A6P7FUW9_DIAVI (ankyrin-1-like n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7FUW9_DIAVI)

HSP 1 Score: 54.7 bits (130), Expect = 1.600e-6
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 1 
Query:    7 PLQLAVDGGHLDAVNALLEAGADPNQ-EFGGKCVLYYSILRSRRDIMASLLLHGADVNK-KVEGCLTVLNVAVGLQDPRMVNDLLGAGANV 273
            PL LA   G+LDAV  L+E GA+ N+ +  G   L+ +     + +   LL HGAD+N  +     T LN++ G+ D  MV  L+ AGAN+
Sbjct:   54 PLHLASRLGNLDAVQQLIEGGAEINEVDSSGLTALHVATFSQHKKVAKYLLAHGADLNAIETYQQETPLNISTGINDHEMVRLLIEAGANM 144
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BLAST of mRNA_A-nodosum_M_contig1128.5.1 vs. uniprot
Match: A0A830GTV2_9CREN (Uncharacterized protein n=1 Tax=Thermocladium modestius TaxID=62609 RepID=A0A830GTV2_9CREN)

HSP 1 Score: 50.4 bits (119), Expect = 4.250e-5
Identity = 38/101 (37.62%), Postives = 54/101 (53.47%), Query Frame = 1 
Query:    1 MIPLQLAVDGGHLDAVNALLEAGADPNQ-------EFGGKCVLYYSILRSRR---DIMASLLLHGADVNKKVEGCLTVLNVAVGLQDPRMVNDLLGAGANV 273
            + PL  AV+ GH   V  LL+ GA+PN        +F  K      +  S+    D++ +L+ +GADVN K EG    L +AV  QDP +V  LL +GA+V
Sbjct:   38 LTPLHWAVNAGHAQIVEILLQNGANPNMLNTPVGSDFN-KIFTPLQLAASKNVNYDVIRTLIRYGADVNSK-EGSPPPLIIAVMKQDPTLVKLLLDSGADV 136
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1128.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6P7FUW9_DIAVI1.600e-638.46ankyrin-1-like n=1 Tax=Diabrotica virgifera virgif... [more]
A0A830GTV2_9CREN4.250e-537.62Uncharacterized protein n=1 Tax=Thermocladium mode... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1128contigA-nodosum_M_contig1128:54631..54924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G159
PFAMsAnk_2,Ank_3,Ank_4,Clr5
Model size294
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.27e-06
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size294
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866526.1498768-CDS-A-nodosum_M_contig1128:54630..549241680866526.1498768-CDS-A-nodosum_M_contig1128:54630..54924Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1128 54631..54924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1128.5.1prot_A-nodosum_M_contig1128.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1128 54631..54924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1128.5.1

>prot_A-nodosum_M_contig1128.5.1 ID=prot_A-nodosum_M_contig1128.5.1|Name=mRNA_A-nodosum_M_contig1128.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=98bp
MIPLQLAVDGGHLDAVNALLEAGADPNQEFGGKCVLYYSILRSRRDIMAS
LLLHGADVNKKVEGCLTVLNVAVGLQDPRMVNDLLGAGANVNNGVSYE
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mRNA from alignment at A-nodosum_M_contig1128:54631..54924+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1128.5.1 ID=mRNA_A-nodosum_M_contig1128.5.1|Name=mRNA_A-nodosum_M_contig1128.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig1128:54631..54924+ (Ascophyllum nodosum dioecious)
ATGATTCCGCTCCAGCTCGCGGTCGACGGAGGCCACCTCGACGCCGTGAA
CGCGTTGCTGGAGGCCGGCGCGGACCCCAACCAAGAGTTTGGTGGGAAGT
GCGTGTTATATTACTCCATCCTGAGAAGTAGGAGAGACATTATGGCGAGT
CTTCTTCTGCACGGGGCTGACGTGAACAAGAAAGTCGAAGGGTGTTTGAC
GGTCCTGAACGTCGCCGTGGGGCTTCAAGACCCGCGCATGGTCAACGATC
TCCTCGGAGCCGGGGCGAACGTAAACAACGGTGTTAGTTATGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1128:54631..54924+

>mRNA_A-nodosum_M_contig1128.5.1 ID=mRNA_A-nodosum_M_contig1128.5.1|Name=mRNA_A-nodosum_M_contig1128.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig1128:54631..54924+ (Ascophyllum nodosum dioecious)
ATGATTCCGCTCCAGCTCGCGGTCGACGGAGGCCACCTCGACGCCGTGAA
CGCGTTGCTGGAGGCCGGCGCGGACCCCAACCAAGAGTTTGGTGGGAAGT
GCGTGTTATATTACTCCATCCTGAGAAGTAGGAGAGACATTATGGCGAGT
CTTCTTCTGCACGGGGCTGACGTGAACAAGAAAGTCGAAGGGTGTTTGAC
GGTCCTGAACGTCGCCGTGGGGCTTCAAGACCCGCGCATGGTCAACGATC
TCCTCGGAGCCGGGGCGAACGTAAACAACGGTGTTAGTTATGAG
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