prot_A-nodosum_M_contig1076.2.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1076.2.1
Unique Nameprot_A-nodosum_M_contig1076.2.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length96
Homology
BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: A0A6H5K703_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K703_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.910e-33
Identity = 64/89 (71.91%), Postives = 70/89 (78.65%), Query Frame = 0
Query:    1 MVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKP 89
            MVMQLIQDFEDV    + L  +GY+IGVRLIDEFLAK  VSTP    D +E ADV+AKVAFKMFLGVT DV+SWNGD TAF LLLYD P
Sbjct:   34 MVMQLIQDFEDVGAVNKQLESMGYNIGVRLIDEFLAKSQVSTP--CTDLKETADVVAKVAFKMFLGVTADVSSWNGDGTAFSLLLYDNP 120          
BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: D8LQV4_ECTSI (Trafficking protein particle complex subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQV4_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.010e-32
Identity = 64/89 (71.91%), Postives = 70/89 (78.65%), Query Frame = 0
Query:    1 MVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKP 89
            MVMQLIQDFEDV    + L  +GY+IGVRLIDEFLAK  VSTP    D +E ADV+AKVAFKMFLGVT DV+SWNGD TAF LLLYD P
Sbjct:   34 MVMQLIQDFEDVGAVNKQLESMGYNIGVRLIDEFLAKAGVSTP--CTDLKETADVVAKVAFKMFLGVTADVSSWNGDGTAFSLLLYDNP 120          
BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: A0A835ZIA0_9STRA (Trafficking protein particle complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIA0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.550e-26
Identity = 56/89 (62.92%), Postives = 66/89 (74.16%), Query Frame = 0
Query:    1 MVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKP 89
            MVMQL+QDFED +     L  +GY+IGVRLIDEFLAK   S  GA AD R+ A+ IAKVAFKMFLGV  +VA+WN D TAF ++LYD P
Sbjct:   34 MVMQLVQDFEDTAAVNAQLDTMGYNIGVRLIDEFLAK---SGTGACADLRDTAETIAKVAFKMFLGVVAEVANWNADGTAFSVVLYDNP 119          
BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: A0A7S2SEE0_9STRA (Trafficking protein particle complex subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEE0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.420e-25
Identity = 51/92 (55.43%), Postives = 65/92 (70.65%), Query Frame = 0
Query:    1 MVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKPRTD 92
            +VMQ+I+D EDV    + L  +GY+IGVR+IDEFLAK  +  PG     RE AD IAKVAFKMFLG+T DV SWN +R++F L  Y+ P T+
Sbjct:   32 LVMQIIEDHEDVDLVNKQLEKIGYNIGVRIIDEFLAKSGL--PGPCQSHRETADSIAKVAFKMFLGITADVTSWNAERSSFCLTFYENPLTE 121          
BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: F0YEM0_AURAN (Trafficking protein particle complex subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEM0_AURAN)

HSP 1 Score: 98.2 bits (243), Expect = 1.060e-23
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 0
Query:    1 MVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKPRTD 92
            MV+QL++DFEDV    + L  +G+ IG+RLIDEFLAK  ++      D  E  DVIAKVAFKMFLGV  DVA+WN D+TA  LLLYD P  D
Sbjct:   34 MVVQLMKDFEDVREVNKKLESMGHGIGMRLIDEFLAKSGINN---CHDFSETCDVIAKVAFKMFLGVGVDVANWNADKTACSLLLYDNPLND 122          
BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: A0A7S2DLH0_9STRA (Trafficking protein particle complex subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLH0_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.500e-23
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = 0
Query:    1 MVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKPRTD 92
            MVMQLI+D+E V    + L  +GY+IG+RLIDEFLAK  V       +P+E ADVIAKVAFKMFLGVT DV +WN   T+F L L+D P T+
Sbjct:   32 MVMQLIKDYEGVDEVNKQLEKMGYNIGIRLIDEFLAKSGVGVN--CQNPQETADVIAKVAFKMFLGVTADV-TWNSQHTSFSLTLFDNPLTE 120          
BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: M4B220_HYAAE (Trafficking protein particle complex subunit n=26 Tax=Peronosporaceae TaxID=4777 RepID=M4B220_HYAAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.540e-23
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 0
Query:    1 MVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKPRTD 92
            +V QL++DFED+      L  +GY+IGVRL+DEFLAK  V+T     D +E A+V+AKVAFKMFLG++ DV+ WN + TA  LLLYD P T+
Sbjct:   33 LVTQLVKDFEDLKVVNEQLDKMGYNIGVRLVDEFLAKSGVTT---CQDFKETAEVVAKVAFKMFLGISVDVSQWNAEGTACSLLLYDNPLTE 121          
BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: UPI001C4D7233 (trafficking protein particle complex subunit 3-like isoform X2 n=1 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4D7233)

HSP 1 Score: 94.4 bits (233), Expect = 1.420e-22
Identity = 51/92 (55.43%), Postives = 62/92 (67.39%), Query Frame = 0
Query:    1 MVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKPRTD 92
            MV QL+ D E+V    + L  +GY+IGVRLIDEFLAK NVS      D +E ADVIAKV FKMFLGVT  V +W+ + T+F L+L D P  D
Sbjct:   31 MVRQLLTDLEEVEEVNKQLDQMGYNIGVRLIDEFLAKSNVSR---CVDFKETADVIAKVGFKMFLGVTASVTNWDAEGTSFSLVLEDNPLVD 119          
BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: A0A7S3K2E4_9STRA (Trafficking protein particle complex subunit n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2E4_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.690e-22
Identity = 50/91 (54.95%), Postives = 63/91 (69.23%), Query Frame = 0
Query:    2 VMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKPRTD 92
            V+QL++D EDV      L  +GY+IG RLIDEFLAK   ++ G   D  E AD IAK+ FKMFLG+T +VA+WN D+TA  LLLY+ P TD
Sbjct:   35 VVQLMKDLEDVQLVNEKLDQMGYNIGTRLIDEFLAKSGTNSCG---DFTETADKIAKIGFKMFLGITVEVANWNTDKTACSLLLYENPLTD 122          
BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: K3WM83_GLOUD (Trafficking protein particle complex subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WM83_GLOUD)

HSP 1 Score: 95.1 bits (235), Expect = 1.740e-22
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 0
Query:    1 MVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKPRTD 92
            MV QLI+DFED+    + L  +GY+IG+RLIDEFLAK  VS      D +E A+VIAK+AFKMFLGV  +VA WN +  A  LL+Y+ P T+
Sbjct:   33 MVTQLIRDFEDLKAVNQQLDNMGYNIGIRLIDEFLAKSGVSN---CQDFKETAEVIAKIAFKMFLGVNAEVAHWNAENNACSLLIYENPLTE 121          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K703_9PHAE3.910e-3371.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQV4_ECTSI1.010e-3271.91Trafficking protein particle complex subunit n=1 T... [more]
A0A835ZIA0_9STRA1.550e-2662.92Trafficking protein particle complex subunit n=1 T... [more]
A0A7S2SEE0_9STRA3.420e-2555.43Trafficking protein particle complex subunit n=1 T... [more]
F0YEM0_AURAN1.060e-2357.61Trafficking protein particle complex subunit n=1 T... [more]
A0A7S2DLH0_9STRA1.500e-2357.61Trafficking protein particle complex subunit n=1 T... [more]
M4B220_HYAAE1.540e-2354.35Trafficking protein particle complex subunit n=26 ... [more]
UPI001C4D72331.420e-2255.43trafficking protein particle complex subunit 3-lik... [more]
A0A7S3K2E4_9STRA1.690e-2254.95Trafficking protein particle complex subunit n=1 T... [more]
K3WM83_GLOUD1.740e-2254.35Trafficking protein particle complex subunit n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007194Transport protein particle (TRAPP) componentPFAMPF04051TRAPPcoord: 1..83
e-value: 1.2E-13
score: 51.0
NoneNo IPR availableGENE3D3.30.1380.20Trafficking protein particle complex subunit 3coord: 1..93
e-value: 1.8E-23
score: 84.7
NoneNo IPR availablePANTHERPTHR13048:SF0TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNITcoord: 1..92
IPR016721Bet3 familyPANTHERPTHR13048TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3coord: 1..92
IPR024096NO signalling/Golgi transport ligand-binding domain superfamilySUPERFAMILY111126Ligand-binding domain in the NO signalling and Golgi transportcoord: 1..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1076contigA-nodosum_M_contig1076:107883..109666 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1076.2.1mRNA_A-nodosum_M_contig1076.2.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1076 107883..109693 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1076.2.1 ID=prot_A-nodosum_M_contig1076.2.1|Name=mRNA_A-nodosum_M_contig1076.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=96bp
MVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPR
EAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKPRTDVYV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007194TRAPP_component
IPR016721Bet3
IPR024096NO_sig/Golgi_transp_ligand-bd