mRNA_A-nodosum_M_contig1076.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1076.2.1
Unique NamemRNA_A-nodosum_M_contig1076.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: A0A6H5K703_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K703_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.150e-39
Identity = 72/98 (73.47%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 ELFALTYGAMVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKP 294
            ELF LTYGAMVMQLIQDFEDV    + L  +GY+IGVRLIDEFLAK  VSTP    D +E ADV+AKVAFKMFLGVT DV+SWNGD TAF LLLYD P
Sbjct:   25 ELFTLTYGAMVMQLIQDFEDVGAVNKQLESMGYNIGVRLIDEFLAKSQVSTP--CTDLKETADVVAKVAFKMFLGVTADVSSWNGDGTAFSLLLYDNP 120
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BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: D8LQV4_ECTSI (Trafficking protein particle complex subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQV4_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 3.160e-39
Identity = 72/98 (73.47%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 ELFALTYGAMVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKP 294
            ELF LTYGAMVMQLIQDFEDV    + L  +GY+IGVRLIDEFLAK  VSTP    D +E ADV+AKVAFKMFLGVT DV+SWNGD TAF LLLYD P
Sbjct:   25 ELFTLTYGAMVMQLIQDFEDVGAVNKQLESMGYNIGVRLIDEFLAKAGVSTP--CTDLKETADVVAKVAFKMFLGVTADVSSWNGDGTAFSLLLYDNP 120
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BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: A0A835ZIA0_9STRA (Trafficking protein particle complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIA0_9STRA)

HSP 1 Score: 122 bits (306), Expect = 5.060e-33
Identity = 64/98 (65.31%), Postives = 74/98 (75.51%), Query Frame = 1 
Query:    1 ELFALTYGAMVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKP 294
            E FALTYGAMVMQL+QDFED +     L  +GY+IGVRLIDEFLAK   S  GA AD R+ A+ IAKVAFKMFLGV  +VA+WN D TAF ++LYD P
Sbjct:   25 EFFALTYGAMVMQLVQDFEDTAAVNAQLDTMGYNIGVRLIDEFLAK---SGTGACADLRDTAETIAKVAFKMFLGVVAEVANWNADGTAFSVVLYDNP 119
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BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: A0A7S2SEE0_9STRA (Trafficking protein particle complex subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEE0_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.260e-31
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:    1 ELFALTYGAMVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKPRTD 303
            E FA+TYGA+VMQ+I+D EDV    + L  +GY+IGVR+IDEFLAK  +  PG     RE AD IAKVAFKMFLG+T DV SWN +R++F L  Y+ P T+
Sbjct:   23 EFFAMTYGALVMQIIEDHEDVDLVNKQLEKIGYNIGVRIIDEFLAKSGL--PGPCQSHRETADSIAKVAFKMFLGITADVTSWNAERSSFCLTFYENPLTE 121
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BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: A0A7S2DLH0_9STRA (Trafficking protein particle complex subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLH0_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.250e-30
Identity = 62/101 (61.39%), Postives = 74/101 (73.27%), Query Frame = 1 
Query:    1 ELFALTYGAMVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKPRTD 303
            ELFALTYGAMVMQLI+D+E V    + L  +GY+IG+RLIDEFLAK  V       +P+E ADVIAKVAFKMFLGVT DV +WN   T+F L L+D P T+
Sbjct:   23 ELFALTYGAMVMQLIKDYEGVDEVNKQLEKMGYNIGIRLIDEFLAKSGVGVN--CQNPQETADVIAKVAFKMFLGVTADV-TWNSQHTSFSLTLFDNPLTE 120
[Close]
BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: M4B220_HYAAE (Trafficking protein particle complex subunit n=26 Tax=Peronosporaceae TaxID=4777 RepID=M4B220_HYAAE)

HSP 1 Score: 115 bits (287), Expect = 3.640e-30
Identity = 58/101 (57.43%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:    1 ELFALTYGAMVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKPRTD 303
            ELFALTYG++V QL++DFED+      L  +GY+IGVRL+DEFLAK  V+T     D +E A+V+AKVAFKMFLG++ DV+ WN + TA  LLLYD P T+
Sbjct:   24 ELFALTYGSLVTQLVKDFEDLKVVNEQLDKMGYNIGVRLVDEFLAKSGVTT---CQDFKETAEVVAKVAFKMFLGISVDVSQWNAEGTACSLLLYDNPLTE 121
[Close]
BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: K3WM83_GLOUD (Trafficking protein particle complex subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WM83_GLOUD)

HSP 1 Score: 113 bits (283), Expect = 1.460e-29
Identity = 59/101 (58.42%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:    1 ELFALTYGAMVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKPRTD 303
            ELFALTYGAMV QLI+DFED+    + L  +GY+IG+RLIDEFLAK  VS      D +E A+VIAK+AFKMFLGV  +VA WN +  A  LL+Y+ P T+
Sbjct:   24 ELFALTYGAMVTQLIRDFEDLKAVNQQLDNMGYNIGIRLIDEFLAKSGVSN---CQDFKETAEVIAKIAFKMFLGVNAEVAHWNAENNACSLLIYENPLTE 121
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BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: A0A7S3K2E4_9STRA (Trafficking protein particle complex subunit n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2E4_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.040e-29
Identity = 59/101 (58.42%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 ELFALTYGAMVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKPRTD 303
            ELFALTYGA V+QL++D EDV      L  +GY+IG RLIDEFLAK   ++ G   D  E AD IAK+ FKMFLG+T +VA+WN D+TA  LLLY+ P TD
Sbjct:   25 ELFALTYGAHVVQLMKDLEDVQLVNEKLDQMGYNIGTRLIDEFLAKSGTNSCG---DFTETADKIAKIGFKMFLGITVEVANWNTDKTACSLLLYENPLTD 122
[Close]
BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: UPI001C4D7233 (trafficking protein particle complex subunit 3-like isoform X2 n=1 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4D7233)

HSP 1 Score: 111 bits (277), Expect = 4.450e-29
Identity = 59/101 (58.42%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 ELFALTYGAMVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKPRTD 303
            ELF LTYGAMV QL+ D E+V    + L  +GY+IGVRLIDEFLAK NVS      D +E ADVIAKV FKMFLGVT  V +W+ + T+F L+L D P  D
Sbjct:   22 ELFTLTYGAMVRQLLTDLEEVEEVNKQLDQMGYNIGVRLIDEFLAKSNVSR---CVDFKETADVIAKVGFKMFLGVTASVTNWDAEGTSFSLVLEDNPLVD 119
[Close]
BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Match: A0A5D6XIP7_9STRA (Trafficking protein particle complex subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XIP7_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.620e-29
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 ELFALTYGAMVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPREAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKPRT 300
            E+FALTYGAMV QLI+DFED     + L  +GY+IG+RLIDEFLAK  V   G   D +E+A+VIAKVAFKMFLGV+ +VA WN +  A  LL+Y+ P T
Sbjct:   24 EVFALTYGAMVTQLIKDFEDFKEVNQQLDNMGYNIGIRLIDEFLAKSGV---GNCQDFKESAEVIAKVAFKMFLGVSAEVAHWNAEGNACSLLIYENPLT 120
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1076.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K703_9PHAE1.150e-3973.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQV4_ECTSI3.160e-3973.47Trafficking protein particle complex subunit n=1 T... [more]
A0A835ZIA0_9STRA5.060e-3365.31Trafficking protein particle complex subunit n=1 T... [more]
A0A7S2SEE0_9STRA2.260e-3157.43Trafficking protein particle complex subunit n=1 T... [more]
A0A7S2DLH0_9STRA1.250e-3061.39Trafficking protein particle complex subunit n=1 T... [more]
M4B220_HYAAE3.640e-3057.43Trafficking protein particle complex subunit n=26 ... [more]
K3WM83_GLOUD1.460e-2958.42Trafficking protein particle complex subunit n=1 T... [more]
A0A7S3K2E4_9STRA4.040e-2958.42Trafficking protein particle complex subunit n=1 T... [more]
UPI001C4D72334.450e-2958.42trafficking protein particle complex subunit 3-lik... [more]
A0A5D6XIP7_9STRA4.620e-2959.00Trafficking protein particle complex subunit n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1076contigA-nodosum_M_contig1076:107883..109693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQV4
Preferred nameTRAPPC3
PFAMsTRAPP
Model size315
Max annot lvl2759|Eukaryota
KEGG koko:K09493,ko:K20302
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0002790,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005793,GO:0005794,GO:0005801,GO:0005829,GO:0006403,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0017016,GO:0017112,GO:0017137,GO:0018996,GO:0019899,GO:0022607,GO:0030008,GO:0031090,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033036,GO:0033106,GO:0033227,GO:0034613,GO:0035264,GO:0040002,GO:0040007,GO:0042303,GO:0042335,GO:0042338,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048589,GO:0048856,GO:0050657,GO:0050658,GO:0051020,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0065003,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090114,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0099023,GO:1990070,GO:1990071,GO:1990072
Exons4
Evalue1.65e-33
EggNOG OGsKOG3330@1|root,KOG3330@2759|Eukaryota
DescriptionGolgi vesicle transport
Cds size288
COG categoryU
BRITEko00000,ko03036,ko03110,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866462.9266315-CDS-A-nodosum_M_contig1076:107882..1079961680866462.9266315-CDS-A-nodosum_M_contig1076:107882..107996Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1076 107883..107996 -
1680866462.9379792-CDS-A-nodosum_M_contig1076:108693..1088021680866462.9379792-CDS-A-nodosum_M_contig1076:108693..108802Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1076 108694..108802 -
1680866462.9540975-CDS-A-nodosum_M_contig1076:109440..1094721680866462.9540975-CDS-A-nodosum_M_contig1076:109440..109472Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1076 109441..109472 -
1680866462.965917-CDS-A-nodosum_M_contig1076:109633..1096661680866462.965917-CDS-A-nodosum_M_contig1076:109633..109666Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1076 109634..109666 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866462.97417-UTR-A-nodosum_M_contig1076:109666..1096931680866462.97417-UTR-A-nodosum_M_contig1076:109666..109693Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1076 109667..109693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1076.2.1prot_A-nodosum_M_contig1076.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1076 107883..109666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1076.2.1

>prot_A-nodosum_M_contig1076.2.1 ID=prot_A-nodosum_M_contig1076.2.1|Name=mRNA_A-nodosum_M_contig1076.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=96bp
MVMQLIQDFEDVSRSTRALIMVGYDIGVRLIDEFLAKCNVSTPGASADPR
EAADVIAKVAFKMFLGVTTDVASWNGDRTAFILLLYDKPRTDVYV*
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mRNA from alignment at A-nodosum_M_contig1076:107883..109693-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1076.2.1 ID=mRNA_A-nodosum_M_contig1076.2.1|Name=mRNA_A-nodosum_M_contig1076.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1811bp|location=Sequence derived from alignment at A-nodosum_M_contig1076:107883..109693- (Ascophyllum nodosum dioecious)
GAGCTGTTTGCTCTGACGTACGGAGCCATGGTGATGCAGCTCATCCAGGA
CTTCGAAGACGTTGGGGCTGTGAACAAACAACTAGAGGGCATGCGAGGCA
ATGATGCATTGGGGCCTCTATTGAACTATTAGCGGAGGGGAGGTGACTCT
CTCAATAGTTATAAGTAAAACATCGCCTATTGCAACAATACAACAGTGTA
GTTATGCACTATCAATGCCAGGTATCCCGTAGTACGAGAGCTCTAATAAT
GGTGTGTACTCTAGTTCGAGGCTACACAGAAGGGGCTCGTGTTACATGTC
GACGAGGATTTTCCTTTCACAGTACATTAGTACATCAGTATCGTGGATCA
GCCTATACTATTTATAGTACGACACTTACTATTATAGCTACCATTATTGT
AATAGTATTTTACGTATTCAAGTACTGGAGAGCCTAATGGAATGATTGTT
TGGCATCACGCGCACTGGACCATAGAGAGGTTCAACGATTGGGGAGGGCG
GGGATACGACGATTTCGTCCCCGTGGAGGTCACCAAAACAGCCCCTTCCA
GGGATAGAACTACATGATCCCCTACATGGTCGGCAAGCTTGCCCCGAATT
CATCACATTTGACCAGGGGGTTAGTCAAATACGTCCCCGGTAGAAGCTAT
TTTCGTGCCGTTTCCTACCAAAACGGGGACAAATTTGCTACATCCCCTTC
CCCCCCAATCGTTGAACTGGTCCATACACCATGAACTATACACTATATAA
GATAATAGTATGTAGCCCAATATATCTGGGCTGTAGGCAGCATGTATAGT
GTATGTGTACTGGGTTGCGCCTTGCCTTGCCATGCCTTGCCTTTATTTTC
TTCTGTTGTTGCTCTGTTTGGTCTGTTCGGTCTGTCAAAAGGGGATACGA
CATCGGCGTTCGATTGATCGACGAGTTCCTCGCAAAGTGCAACGTTTCAA
CTCCGGGGGCTTCAGCGGACCCGAGGGAGGCAGCCGACGTCATCGCCAAG
GTGCGACAGAAACGTTTGCCGGGGGGGTTGTACACAGGAACATACTTCTG
TGAATTTGTCTAAAGTGCTTGTACAATCACCTGCGCATTCATTTCTATAA
CCCTCCCTCTCCCTGCCCCCCGCCCCTCACACAACTCGCGGAAAAACGTC
GCTCAAAACGAGCGGTAGAGCGCCCCTGTGTAGGGCATTATTAGTAGGCC
ATATTGTTAGGGAGGTCAGAGGTCAATGGGTTACTGTCGTCGAGTACAGG
CCCAGGTGCCTCGGTGTAGGCGTCGACGTTTTAGCCTTTGACTGTTGGAA
ATAAAGGAGACGTTTTTTACCCCCCTCTGGCTGCGCGGAGGAGGAAATGT
CCCCTGCCCCCTGTCAGTTGTACCTTGTAACTGAAAGGAAGGGCGTCCTT
TTTATTAACAATTTTTAACGGCCTTGTACGCCCAGATAACAGCACTTATT
GTGATAGGTATCCGCAATCAAGAGCTATTGTAGCCTTATAGATTTGTACT
TTACACGTATTAATATCAATAGCAAAACAACGACCAAAAGTAGAGCTGCT
ACTGATAGCCTGCGATCAACACGTTTCGGGTCTTTTCCGCCGCTTCCAGC
GCTGAGTAGAAGATTGTGCATTGGGCTCGTCGTACGGAACCGCCCCTCTA
TGTCCATCTCGCTCTCTCTCTCTCCCTTTGTGTCCATCTCTGAGCAGGTG
GCTTTCAAAATGTTCTTAGGGGTTACGACCGACGTGGCGTCTTGGAACGG
AGACAGGACCGCTTTCATCCTACTGCTGTACGACAAGCCCCGCACAGATG
TGTATGTGTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1076:107883..109693-

>mRNA_A-nodosum_M_contig1076.2.1 ID=mRNA_A-nodosum_M_contig1076.2.1|Name=mRNA_A-nodosum_M_contig1076.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at A-nodosum_M_contig1076:107883..109693- (Ascophyllum nodosum dioecious)
ATGGTGATGCAGCTCATCCAGGACTTCGAAGACGTATCCCGTAGTACGAG
AGCTCTAATAATGGTGGGATACGACATCGGCGTTCGATTGATCGACGAGT
TCCTCGCAAAGTGCAACGTTTCAACTCCGGGGGCTTCAGCGGACCCGAGG
GAGGCAGCCGACGTCATCGCCAAGGTGGCTTTCAAAATGTTCTTAGGGGT
TACGACCGACGTGGCGTCTTGGAACGGAGACAGGACCGCTTTCATCCTAC
TGCTGTACGACAAGCCCCGCACAGATGTGTATGTGTAG
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