prot_A-nodosum_M_contig1.151.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1.151.1
Unique Nameprot_A-nodosum_M_contig1.151.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length210
Homology
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BLAST of mRNA_A-nodosum_M_contig1.151.1 vs. uniprot
Match: D8LLN9_ECTSI (Similar to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 8.030e-28
Identity = 90/209 (43.06%), Postives = 112/209 (53.59%), Query Frame = 0 
Query:    1 VDEAKTATLLIIAPEEARRASTTFAIDTKHPSPPGLET-DINGEVSLAPGQHHEAHVTWLPDQPGKFRGILALRVNGRFPAQVSVVGEALSLCGDGAKANRSDGRAFGKQVEKCPSVGTNGGDVLPRRRASLAREEPRGLARSAPTKGKENRPR---------------SPSASSSTL------RKRQQMLEYSASRRLSVKDPLKKEE 187
            V E K ATL I  PE AR+A TT   D +HP   GLE  D +GE+SL  G++ E HV W P++ GKFRG LA +V+GRFPAQVSVVGE + + G G K  + D R   K+V     VG   G  L +  AS      RG        GKENR                 SP + ++ L       KRQQML+YS SRRLS+K   K+E+
Sbjct:   44 VGEGKGATLRIEVPEGARKAVTTIGFDPRHPLSGGLEVADFDGELSLGRGEYREVHVAWRPERVGKFRGNLAFKVDGRFPAQVSVVGETVDV-GGGGKRRKGDAREGRKRVRGGLPVGARAGRSLSQEAAS------RGAGPHTSMYGKENRLSLSSTALPPAASVLGPSPDSFAAALCPRTANNKRQQMLKYSKSRRLSLKPGHKREK 245
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1.151.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLN9_ECTSI8.030e-2843.06Similar to asp (Abnormal spindle)-like, microcepha... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1contigA-nodosum_M_contig1:2025695..2027821 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1.151.1mRNA_A-nodosum_M_contig1.151.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1 2025695..2027821 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1.151.1 ID=prot_A-nodosum_M_contig1.151.1|Name=mRNA_A-nodosum_M_contig1.151.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=210bp
VDEAKTATLLIIAPEEARRASTTFAIDTKHPSPPGLETDINGEVSLAPGQ
HHEAHVTWLPDQPGKFRGILALRVNGRFPAQVSVVGEALSLCGDGAKANR
SDGRAFGKQVEKCPSVGTNGGDVLPRRRASLAREEPRGLARSAPTKGKEN
RPRSPSASSSTLRKRQQMLEYSASRRLSVKDPLKKEEKMLPLNVIRRTTA
HLPKTGGEQS
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