mRNA_A-nodosum_M_contig1.151.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1.151.1
Unique NamemRNA_A-nodosum_M_contig1.151.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1.151.1 vs. uniprot
Match: D8LLN9_ECTSI (Similar to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 8.030e-28
Identity = 90/209 (43.06%), Postives = 112/209 (53.59%), Query Frame = 1 
Query:    1 VDEAKTATLLIIAPEEARRASTTFAIDTKHPSPPGLET-DINGEVSLAPGQHHEAHVTWLPDQPGKFRGILALRVNGRFPAQVSVVGEALSLCGDGAKANRSDGRAFGKQVEKCPSVGTNGGDVLPRRRASLAREEPRGLARSAPTKGKENRPR---------------SPSASSSTL------RKRQQMLEYSASRRLSVKDPLKKEE 561
            V E K ATL I  PE AR+A TT   D +HP   GLE  D +GE+SL  G++ E HV W P++ GKFRG LA +V+GRFPAQVSVVGE + + G G K  + D R   K+V     VG   G  L +  AS      RG        GKENR                 SP + ++ L       KRQQML+YS SRRLS+K   K+E+
Sbjct:   44 VGEGKGATLRIEVPEGARKAVTTIGFDPRHPLSGGLEVADFDGELSLGRGEYREVHVAWRPERVGKFRGNLAFKVDGRFPAQVSVVGETVDV-GGGGKRRKGDAREGRKRVRGGLPVGARAGRSLSQEAAS------RGAGPHTSMYGKENRLSLSSTALPPAASVLGPSPDSFAAALCPRTANNKRQQMLKYSKSRRLSLKPGHKREK 245
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1.151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLN9_ECTSI8.030e-2843.06Similar to asp (Abnormal spindle)-like, microcepha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1contigA-nodosum_M_contig1:2025695..2027821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LLN9
Preferred nameASPM
PFAMsASH,Arm,CH,IQ
Model size632
Max annot lvl2759|Eukaryota
KEGG koko:K16743,ko:K16774
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000922,GO:0001764,GO:0002052,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007399,GO:0007405,GO:0007417,GO:0007420,GO:0007548,GO:0008150,GO:0008283,GO:0008284,GO:0008406,GO:0008584,GO:0009786,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010720,GO:0010721,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0016477,GO:0017145,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0021537,GO:0021543,GO:0021872,GO:0021873,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030154,GO:0030177,GO:0030496,GO:0030900,GO:0032501,GO:0032502,GO:0032504,GO:0036445,GO:0036449,GO:0040007,GO:0040011,GO:0042127,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045137,GO:0045177,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045769,GO:0046546,GO:0046661,GO:0048103,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051094,GO:0051179,GO:0051225,GO:0051235,GO:0051239,GO:0051240,GO:0051241,GO:0051301,GO:0051302,GO:0051321,GO:0051445,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051653,GO:0051657,GO:0051661,GO:0051674,GO:0051704,GO:0051726,GO:0051782,GO:0051960,GO:0051961,GO:0051962,GO:0055057,GO:0060284,GO:0060322,GO:0060828,GO:0061351,GO:0061458,GO:0061842,GO:0065007,GO:0065008,GO:0070925,GO:0071840,GO:0071944,GO:0072089,GO:0072091,GO:0072686,GO:0072687,GO:0090263,GO:0090306,GO:0097150,GO:0097431,GO:0098590,GO:0098727,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140013,GO:1902692,GO:1903046,GO:1990752,GO:2000026,GO:2000177,GO:2000179,GO:2000241,GO:2000648
Exons4
Evalue1.32e-28
EggNOG OGsCOG5022@1|root,KOG0165@1|root,KOG0160@2759|Eukaryota,KOG0165@2759|Eukaryota
Descriptionnegative regulation of asymmetric cell division
Cds size630
COG categoryZ
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866345.3583975-CDS-A-nodosum_M_contig1:2025694..20257601680866345.3583975-CDS-A-nodosum_M_contig1:2025694..2025760Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 2025695..2025760 -
1680866345.3716598-CDS-A-nodosum_M_contig1:2026171..20263031680866345.3716598-CDS-A-nodosum_M_contig1:2026171..2026303Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 2026172..2026303 -
1680866345.3826053-CDS-A-nodosum_M_contig1:2026859..20271411680866345.3826053-CDS-A-nodosum_M_contig1:2026859..2027141Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 2026860..2027141 -
1680866345.3929203-CDS-A-nodosum_M_contig1:2027671..20278211680866345.3929203-CDS-A-nodosum_M_contig1:2027671..2027821Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 2027672..2027821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1.151.1prot_A-nodosum_M_contig1.151.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1 2025695..2027821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1.151.1

>prot_A-nodosum_M_contig1.151.1 ID=prot_A-nodosum_M_contig1.151.1|Name=mRNA_A-nodosum_M_contig1.151.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=210bp
VDEAKTATLLIIAPEEARRASTTFAIDTKHPSPPGLETDINGEVSLAPGQ
HHEAHVTWLPDQPGKFRGILALRVNGRFPAQVSVVGEALSLCGDGAKANR
SDGRAFGKQVEKCPSVGTNGGDVLPRRRASLAREEPRGLARSAPTKGKEN
RPRSPSASSSTLRKRQQMLEYSASRRLSVKDPLKKEEKMLPLNVIRRTTA
HLPKTGGEQS
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mRNA from alignment at A-nodosum_M_contig1:2025695..2027821-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1.151.1 ID=mRNA_A-nodosum_M_contig1.151.1|Name=mRNA_A-nodosum_M_contig1.151.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2127bp|location=Sequence derived from alignment at A-nodosum_M_contig1:2025695..2027821- (Ascophyllum nodosum dioecious)
GTGGACGAGGCCAAAACGGCGACGTTGCTAATCATAGCTCCAGAGGAAGC
TAGGCGGGCATCGACGACCTTCGCCATCGACACCAAACACCCTTCGCCTC
CAGGGCTAGAAACCGACATCAACGGTGAAGTGTCGCTCGCGCCAGGGCAG
GTGGGATTCTTTAGACCGTATCCAGCATTAATAATTATTGTATTAATAAT
ACAGGGAGAGAGAGAGAGAGAGGGGGGAAGAGGTACCTTTCGGCCTTCTA
ATATGGGCGTCTTGCCTTGATTATTACAAACAATATCATAAACTTTTAAG
GACATCGGGGACTGGTCCGTTGCATTGCTTACTACTGCTGTGCAAGTACA
GGTATATTTCTTTCATTCTTTTTTAACAGTAATGTCAACTTTTCTGTTGC
TTGTGTCTAAGACAGCAGTTACGCCGTTGGGTGTCACAAGCTCAAGTCAA
GCCACACAAGCGTATGTACTGTCTGGAGAACGACGTGTAGCACCTACCAC
TGTTTGTTCAGCACAATCGCAGCTCTCAGTCATGACAGCAGTCAGGAGAC
CAATGAAGCGAGTTGACAGAAAAAAATGACTCCAGACTGCTCGCCATCTT
CTACCGGTCCGACACTCGTACGCTTGGTCGGCACTGTAACGAAAATCTGA
ACACACGTCGCCGTGATTTCCTCGAAACAGCATCACGAGGCGCACGTTAC
GTGGCTGCCCGACCAACCCGGGAAATTTCGCGGAATCCTAGCGCTCCGCG
TCAACGGTCGCTTCCCCGCGCAAGTTTCGGTCGTGGGAGAGGCCCTCTCA
CTCTGCGGCGATGGAGCAAAAGCGAACCGGAGCGATGGTCGTGCCTTTGG
AAAACAGGTCGAGAAGTGTCCAAGCGTGGGCACCAACGGAGGCGATGTTC
TCCCGAGAAGGCGGGCGTCTTTGGCTAGGGAGGAGCCACGAGGCTTGGCG
CGCTCCGCACCGGTGGGTGGGCTCTGTCTGCGTGTCTTGAGCGCAGGTGT
CATGTTAGAAGATGATTTACGAGTGCTACGATCCTAAATACTGGCTGCAA
CTCTCATCCAGAGATTGCATAGAAAAAACATACCTGGTACTGGTAAGCCC
GAACGCGTCTCATGGCGTATGAACTGTAGGATCAAGATTCCAGCACTCGT
CACGGGTGAAACGTGAGGGTAAGGTCTTGAGTGCAGGTCTCATGTTGTAA
GATGATTAACGGTTGCTAAGGTCGGTCGTCAACGCTGACGGCGACGCTTA
TCCAGAGATTTCATAGAAAAGCCAGAAGCCCGAATGCGTCTCATGGCGTA
TGAACAGTACTAACTGTAGGATCAAGGCTCCAGCGCTCGCCATGTTGAAA
CGGTTCGGTCCCGCGTTAAAAGTAACCTCGTGGACGGCGAGGTCTAGCTT
TTTACTGCACCTCGATCCGCCCGTACGCCCCGCCCCCCAACCACCGTTAA
ACTCTTCACGAATCCCCCATTTTATCCCATCTTGGTGTATGTATCCTTAA
CCGCGTGGTGTGTGATAGACAAAAGGCAAGGAAAACCGGCCACGGTCGCC
CTCCGCCTCGTCGAGTACACTGAGGAAGCGACAGCAAATGCTGGAGTACT
CGGCCTCCAGGAGGCTTTCGGTCAAGGATCCCCTCAAGAAAGAGGAAAAG
GTTACAGTATAGCCCTCATCCGCCCTGAGGCATTTTTTTCAAGTTTCAAG
TTTCAAGTTTTTTTCCTTTCTTTTTTGGCGCGTGGTCTGTTTTGAAGTAT
TATAGCTTCTCTCAGTGTTCGGTATGCGCTCTACTGAGGGCGCTTACTAG
TACCACCCCTGGGTGAGCGAGAGACCGATGTTGTCTAACGTCCGTGCGAA
GGGAGGGGAGGGGAGGGGGGTGGAGGGCGATGTTGTCTACTCTGCTATTT
CTGATCAGCAGAGGGTGAGAGTGCAGCGCTTTGATCGTCAGTAGCACGCT
GTACGTTCTGAGTTCCTCGGAATACTCTGCGGCGTGGCGATGATTCCGGA
AGAAACGTTTCCAACCCCCCCCCCCCCCCCACATCCCCGCGTCAATACCG
GCTTTCTTCAGATGCTTCCCCTCAACGTTATCCGGAGGACAACGGCACAC
CTTCCCAAGACCGGTGGTGAGCAGAGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1:2025695..2027821-

>mRNA_A-nodosum_M_contig1.151.1 ID=mRNA_A-nodosum_M_contig1.151.1|Name=mRNA_A-nodosum_M_contig1.151.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at A-nodosum_M_contig1:2025695..2027821- (Ascophyllum nodosum dioecious)
GTGGACGAGGCCAAAACGGCGACGTTGCTAATCATAGCTCCAGAGGAAGC
TAGGCGGGCATCGACGACCTTCGCCATCGACACCAAACACCCTTCGCCTC
CAGGGCTAGAAACCGACATCAACGGTGAAGTGTCGCTCGCGCCAGGGCAG
CATCACGAGGCGCACGTTACGTGGCTGCCCGACCAACCCGGGAAATTTCG
CGGAATCCTAGCGCTCCGCGTCAACGGTCGCTTCCCCGCGCAAGTTTCGG
TCGTGGGAGAGGCCCTCTCACTCTGCGGCGATGGAGCAAAAGCGAACCGG
AGCGATGGTCGTGCCTTTGGAAAACAGGTCGAGAAGTGTCCAAGCGTGGG
CACCAACGGAGGCGATGTTCTCCCGAGAAGGCGGGCGTCTTTGGCTAGGG
AGGAGCCACGAGGCTTGGCGCGCTCCGCACCGACAAAAGGCAAGGAAAAC
CGGCCACGGTCGCCCTCCGCCTCGTCGAGTACACTGAGGAAGCGACAGCA
AATGCTGGAGTACTCGGCCTCCAGGAGGCTTTCGGTCAAGGATCCCCTCA
AGAAAGAGGAAAAGATGCTTCCCCTCAACGTTATCCGGAGGACAACGGCA
CACCTTCCCAAGACCGGTGGTGAGCAGAGC
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