prot_A-nodosum_M_contig997.12.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig997.12.1
Unique Nameprot_A-nodosum_M_contig997.12.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length34
Homology
BLAST of mRNA_A-nodosum_M_contig997.12.1 vs. uniprot
Match: K0SL39_THAOC (C3H1-type domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SL39_THAOC)

HSP 1 Score: 51.6 bits (122), Expect = 5.590e-8
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 0
Query:    2 SKRYLLVKAEGEGPKTCAFFSSEAGCRNGANCK 34
            +K Y L  + G+GPK CAFF SE GCRNG+NCK
Sbjct:   16 TKGYKLTSSSGDGPKVCAFFFSEQGCRNGSNCK 48          
BLAST of mRNA_A-nodosum_M_contig997.12.1 vs. uniprot
Match: K0RUK2_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RUK2_THAOC)

HSP 1 Score: 51.6 bits (122), Expect = 1.080e-7
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 0
Query:    2 SKRYLLVKAEGEGPKTCAFFSSEAGCRNGANCK 34
            +K Y L  + G+GPK CAFF SE GCRNG+NCK
Sbjct:    4 TKGYKLTSSSGDGPKVCAFFFSEQGCRNGSNCK 36          
BLAST of mRNA_A-nodosum_M_contig997.12.1 vs. uniprot
Match: B8CCE8_THAPS (C3H1-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCE8_THAPS)

HSP 1 Score: 51.2 bits (121), Expect = 1.920e-6
Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 0
Query:    1 MSKRYLLVKAEGEGPKTCAFFSSEAGCRNGANCK 34
            M K Y L  A+G+GPK CAFF S+ GCRNGA CK
Sbjct:    1 MGKGYKLTSADGDGPKQCAFFFSDKGCRNGAVCK 34          
BLAST of mRNA_A-nodosum_M_contig997.12.1 vs. uniprot
Match: A0A7R9Y9T2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9T2_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 6.710e-6
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0
Query:    4 RYLLVKAEG--EGPKTCAFFSSEAGCRNGANC 33
            +YLL KAEG   G + CAFF+SEAGCRNGANC
Sbjct:    2 KYLLFKAEGADSGSRPCAFFNSEAGCRNGANC 33          
BLAST of mRNA_A-nodosum_M_contig997.12.1 vs. uniprot
Match: A0A7S3L719_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L719_9STRA)

HSP 1 Score: 45.8 bits (107), Expect = 8.950e-5
Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 0
Query:    2 SKRYLLVKAEGEGP-KTCAFFSSEAGCRNGANCK 34
            +K+Y L   +GEG  K CAFF S+ GCRNGANCK
Sbjct:   27 AKKYKLFSNQGEGDEKPCAFFMSDKGCRNGANCK 60          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig997.12.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
K0SL39_THAOC5.590e-863.64C3H1-type domain-containing protein (Fragment) n=1... [more]
K0RUK2_THAOC1.080e-763.64Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
B8CCE8_THAPS1.920e-664.71C3H1-type domain-containing protein n=1 Tax=Thalas... [more]
A0A7R9Y9T2_9STRA6.710e-671.88Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S3L719_9STRA8.950e-561.76Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 12..34
score: 8.906126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig997contigA-nodosum_M_contig997:81913..82014 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig997.12.1mRNA_A-nodosum_M_contig997.12.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig997 81913..82014 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig997.12.1 ID=prot_A-nodosum_M_contig997.12.1|Name=mRNA_A-nodosum_M_contig997.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=34bp
MSKRYLLVKAEGEGPKTCAFFSSEAGCRNGANCK
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH