mRNA_A-nodosum_M_contig997.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig997.12.1
Unique NamemRNA_A-nodosum_M_contig997.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig997.12.1 vs. uniprot
Match: K0SL39_THAOC (C3H1-type domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SL39_THAOC)

HSP 1 Score: 51.6 bits (122), Expect = 5.590e-8
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    4 SKRYLLVKAEGEGPKTCAFFSSEAGCRNGANCK 102
            +K Y L  + G+GPK CAFF SE GCRNG+NCK
Sbjct:   16 TKGYKLTSSSGDGPKVCAFFFSEQGCRNGSNCK 48
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BLAST of mRNA_A-nodosum_M_contig997.12.1 vs. uniprot
Match: K0RUK2_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RUK2_THAOC)

HSP 1 Score: 51.6 bits (122), Expect = 1.080e-7
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    4 SKRYLLVKAEGEGPKTCAFFSSEAGCRNGANCK 102
            +K Y L  + G+GPK CAFF SE GCRNG+NCK
Sbjct:    4 TKGYKLTSSSGDGPKVCAFFFSEQGCRNGSNCK 36
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BLAST of mRNA_A-nodosum_M_contig997.12.1 vs. uniprot
Match: B8CCE8_THAPS (C3H1-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCE8_THAPS)

HSP 1 Score: 51.2 bits (121), Expect = 1.920e-6
Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 MSKRYLLVKAEGEGPKTCAFFSSEAGCRNGANCK 102
            M K Y L  A+G+GPK CAFF S+ GCRNGA CK
Sbjct:    1 MGKGYKLTSADGDGPKQCAFFFSDKGCRNGAVCK 34
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BLAST of mRNA_A-nodosum_M_contig997.12.1 vs. uniprot
Match: A0A7R9Y9T2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9T2_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 6.710e-6
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   10 RYLLVKAEG--EGPKTCAFFSSEAGCRNGANC 99
            +YLL KAEG   G + CAFF+SEAGCRNGANC
Sbjct:    2 KYLLFKAEGADSGSRPCAFFNSEAGCRNGANC 33
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BLAST of mRNA_A-nodosum_M_contig997.12.1 vs. uniprot
Match: A0A7S3L719_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L719_9STRA)

HSP 1 Score: 45.8 bits (107), Expect = 8.950e-5
Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    4 SKRYLLVKAEGEGP-KTCAFFSSEAGCRNGANCK 102
            +K+Y L   +GEG  K CAFF S+ GCRNGANCK
Sbjct:   27 AKKYKLFSNQGEGDEKPCAFFMSDKGCRNGANCK 60
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig997.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
K0SL39_THAOC5.590e-863.64C3H1-type domain-containing protein (Fragment) n=1... [more]
K0RUK2_THAOC1.080e-763.64Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
B8CCE8_THAPS1.920e-664.71C3H1-type domain-containing protein n=1 Tax=Thalas... [more]
A0A7R9Y9T2_9STRA6.710e-671.88Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S3L719_9STRA8.950e-561.76Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig997contigA-nodosum_M_contig997:81913..82014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FI85
PFAMsEloA-BP1,RNase_T,zf-CCCH
Model size102
Max annot lvl2759|Eukaryota
KEGG koko:K14570
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.87e-08
EggNOG OGsCOG0847@1|root,KOG2248@2759|Eukaryota
Descriptionexonuclease activity
Cds size102
COG categoryL
BRITEko00000,ko00001,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870543.0951278-CDS-A-nodosum_M_contig997:81912..820141680870543.0951278-CDS-A-nodosum_M_contig997:81912..82014Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig997 81913..82014 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig997.12.1prot_A-nodosum_M_contig997.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig997 81913..82014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig997.12.1

>prot_A-nodosum_M_contig997.12.1 ID=prot_A-nodosum_M_contig997.12.1|Name=mRNA_A-nodosum_M_contig997.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=34bp
MSKRYLLVKAEGEGPKTCAFFSSEAGCRNGANCK
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mRNA from alignment at A-nodosum_M_contig997:81913..82014-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig997.12.1 ID=mRNA_A-nodosum_M_contig997.12.1|Name=mRNA_A-nodosum_M_contig997.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=102bp|location=Sequence derived from alignment at A-nodosum_M_contig997:81913..82014- (Ascophyllum nodosum dioecious)
ATGTCGAAGCGATACCTCCTCGTCAAGGCCGAAGGCGAAGGACCGAAGAC
ATGTGCCTTCTTTTCATCGGAGGCGGGCTGTAGAAATGGTGCTAATTGCA
AA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig997:81913..82014-

>mRNA_A-nodosum_M_contig997.12.1 ID=mRNA_A-nodosum_M_contig997.12.1|Name=mRNA_A-nodosum_M_contig997.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=102bp|location=Sequence derived from alignment at A-nodosum_M_contig997:81913..82014- (Ascophyllum nodosum dioecious)
ATGTCGAAGCGATACCTCCTCGTCAAGGCCGAAGGCGAAGGACCGAAGAC
ATGTGCCTTCTTTTCATCGGAGGCGGGCTGTAGAAATGGTGCTAATTGCA
AA
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