Homology
BLAST of mRNA_A-nodosum_M_contig997.12.1 vs. uniprot
Match:
K0SL39_THAOC (C3H1-type domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SL39_THAOC)
HSP 1 Score: 51.6 bits (122), Expect = 5.590e-8
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 0
Query: 2 SKRYLLVKAEGEGPKTCAFFSSEAGCRNGANCK 34
+K Y L + G+GPK CAFF SE GCRNG+NCK
Sbjct: 16 TKGYKLTSSSGDGPKVCAFFFSEQGCRNGSNCK 48
BLAST of mRNA_A-nodosum_M_contig997.12.1 vs. uniprot
Match:
K0RUK2_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RUK2_THAOC)
HSP 1 Score: 51.6 bits (122), Expect = 1.080e-7
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 0
Query: 2 SKRYLLVKAEGEGPKTCAFFSSEAGCRNGANCK 34
+K Y L + G+GPK CAFF SE GCRNG+NCK
Sbjct: 4 TKGYKLTSSSGDGPKVCAFFFSEQGCRNGSNCK 36
BLAST of mRNA_A-nodosum_M_contig997.12.1 vs. uniprot
Match:
B8CCE8_THAPS (C3H1-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCE8_THAPS)
HSP 1 Score: 51.2 bits (121), Expect = 1.920e-6
Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 0
Query: 1 MSKRYLLVKAEGEGPKTCAFFSSEAGCRNGANCK 34
M K Y L A+G+GPK CAFF S+ GCRNGA CK
Sbjct: 1 MGKGYKLTSADGDGPKQCAFFFSDKGCRNGAVCK 34
BLAST of mRNA_A-nodosum_M_contig997.12.1 vs. uniprot
Match:
A0A7R9Y9T2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9T2_9STRA)
HSP 1 Score: 49.7 bits (117), Expect = 6.710e-6
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0
Query: 4 RYLLVKAEG--EGPKTCAFFSSEAGCRNGANC 33
+YLL KAEG G + CAFF+SEAGCRNGANC
Sbjct: 2 KYLLFKAEGADSGSRPCAFFNSEAGCRNGANC 33
BLAST of mRNA_A-nodosum_M_contig997.12.1 vs. uniprot
Match:
A0A7S3L719_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L719_9STRA)
HSP 1 Score: 45.8 bits (107), Expect = 8.950e-5
Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 0
Query: 2 SKRYLLVKAEGEGP-KTCAFFSSEAGCRNGANCK 34
+K+Y L +GEG K CAFF S+ GCRNGANCK
Sbjct: 27 AKKYKLFSNQGEGDEKPCAFFMSDKGCRNGANCK 60
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig997.12.1 vs. uniprot
Analysis Date: 2022-09-16 (
Diamond blastp: OGS1.0 vs UniRef90 )
Total hits: 5
M S K R Y L L V K A E G E G P K T C A F F S S E A G C R N G A N C K 5 10 15 20 25 30 Expect = 5.59e-8 / Id = 63.64 Expect = 1.08e-7 / Id = 63.64 Expect = 1.92e-6 / Id = 64.71 Expect = 6.71e-6 / Id = 71.88 Expect = 8.95e-5 / Id = 61.76 Sequence K0SL39_THAOC K0RUK2_THAOC B8CCE8_THAPS A0A7R9Y9T2_9STRA A0A7S3L719_9STRA back to top
InterPro
Analysis Name:
InterProScan on OGS1.0
Date Performed: 2022-09-29
M S K R Y L L V K A E G E G P K T C A F F S S E A G C R N G A N C K 5 10 15 20 25 30 Score = 8.906126 Sequence PS50103
IPR Term IPR Description Source Source Term Source Description Alignment
IPR000571 Zinc finger, CCCH-type PROSITE PS50103 ZF_C3H1 coord: 12..34
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence
>prot_A-nodosum_M_contig997.12.1 ID=prot_A-nodosum_M_contig997.12.1|Name=mRNA_A-nodosum_M_contig997.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=34bp back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
Term Definition
IPR000571 Znf_CCCH