prot_A-nodosum_M_contig990.14.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig990.14.1
Unique Nameprot_A-nodosum_M_contig990.14.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length175
Homology
BLAST of mRNA_A-nodosum_M_contig990.14.1 vs. uniprot
Match: A0A6H5KH01_9PHAE (CHAT domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH01_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.230e-11
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:   15 LFAFFFSKALVQTANKDSSLQREEFSSPDFHEVFRIIKDCLVETGRQTRLRLEHATGWNVLRRLSAGCQILHFTGHGCDQFLAFEAEEARRCGIMEQLDV 114
            L  + FS  LV         + E+  +    E  ++I+  L E+GRQ R R E A   N    L++GC++LH+TGHG ++FLAFE+ + R CGIME L V
Sbjct:   26 LLGYVFSSPLVSWGENGRMKRMEQLGTS---EELKMIRMKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGNNEFLAFESNDDRMCGIMEPLHV 122          
BLAST of mRNA_A-nodosum_M_contig990.14.1 vs. uniprot
Match: D7FNX8_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX8_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 5.050e-10
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 0
Query:   50 IIKDCLVETGRQTRLRLEHATGWNVLRRLSAGCQILHFTGHGCDQFLAFEAEEARRCGIMEQLDV 114
            +I+  L E+GRQ R R E A   N    L++GC++LH+TGHG ++FLAFE+ + R CGIME L V
Sbjct:    1 MIRMKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHV 65          
BLAST of mRNA_A-nodosum_M_contig990.14.1 vs. uniprot
Match: D7FNY6_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY6_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.200e-9
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 0
Query:   46 EVFRIIKDCLVETGRQTRLRLEHATGWNVLRRLSAGCQILHFTGHGCDQFLAFEAEEARRCGIMEQLDVK 115
            E    +++ L   GRQ + R E A   N+ R L +GC +LH+ GHG D++LAFE+    +CGIME L VK
Sbjct:   50 EELEFVRNKLRGFGRQIKFRAEVANAMNLTRLLHSGCLLLHYAGHGNDEYLAFESTTEWKCGIMEPLKVK 119          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig990.14.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KH01_9PHAE1.230e-1140.00CHAT domain-containing protein (Fragment) n=1 Tax=... [more]
D7FNX8_ECTSI5.050e-1050.77SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
D7FNY6_ECTSI3.200e-944.29SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig990contigA-nodosum_M_contig990:274931..286456 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig990.14.1mRNA_A-nodosum_M_contig990.14.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig990 274837..286458 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig990.14.1 ID=prot_A-nodosum_M_contig990.14.1|Name=mRNA_A-nodosum_M_contig990.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=175bp
MEQNNMGAVEESRGLFAFFFSKALVQTANKDSSLQREEFSSPDFHEVFRI
IKDCLVETGRQTRLRLEHATGWNVLRRLSAGCQILHFTGHGCDQFLAFEA
EEARRCGIMEQLDVKKSDLVNADDACAFSQVCSHLESRKMFSCDSRVSIE
ASTDRLCTLHPPLTLLWDNNITPP*
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