mRNA_A-nodosum_M_contig990.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig990.14.1
Unique NamemRNA_A-nodosum_M_contig990.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig990.14.1 vs. uniprot
Match: A0A6H5KH01_9PHAE (CHAT domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH01_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.770e-11
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:  137 LFAFFFSKALVQTANKDSSLQREEFSSPDFHEVFRIIKDCLVETGRQTRLRLEHATGWNVLRRLSAGCQILHFTGHGCDQFLAFEAEEARRCGIMEQLDV 436
            L  + FS  LV         + E+  +    E  ++I+  L E+GRQ R R E A   N    L++GC++LH+TGHG ++FLAFE+ + R CGIME L V
Sbjct:   26 LLGYVFSSPLVSWGENGRMKRMEQLGTS---EELKMIRMKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGNNEFLAFESNDDRMCGIMEPLHV 122          
BLAST of mRNA_A-nodosum_M_contig990.14.1 vs. uniprot
Match: D7FNX8_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX8_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.120e-9
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  242 IIKDCLVETGRQTRLRLEHATGWNVLRRLSAGCQILHFTGHGCDQFLAFEAEEARRCGIMEQLDV 436
            +I+  L E+GRQ R R E A   N    L++GC++LH+TGHG ++FLAFE+ + R CGIME L V
Sbjct:    1 MIRMKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHV 65          
BLAST of mRNA_A-nodosum_M_contig990.14.1 vs. uniprot
Match: D7FNY6_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY6_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 6.950e-9
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 2
Query:  230 EVFRIIKDCLVETGRQTRLRLEHATGWNVLRRLSAGCQILHFTGHGCDQFLAFEAEEARRCGIMEQLDVK 439
            E    +++ L   GRQ + R E A   N+ R L +GC +LH+ GHG D++LAFE+    +CGIME L VK
Sbjct:   50 EELEFVRNKLRGFGRQIKFRAEVANAMNLTRLLHSGCLLLHYAGHGNDEYLAFESTTEWKCGIMEPLKVK 119          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig990.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KH01_9PHAE2.770e-1140.00CHAT domain-containing protein (Fragment) n=1 Tax=... [more]
D7FNX8_ECTSI1.120e-950.77SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
D7FNY6_ECTSI6.950e-944.29SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig990contigA-nodosum_M_contig990:274837..286458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNX8
PFAMsCHAT,FHA,NACHT,SH2
Model size621
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.28e-11
EggNOG OGs28NM8@1|root,2QV6X@2759|Eukaryota
Cds size525
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870528.299428-UTR-A-nodosum_M_contig990:274836..2749301680870528.299428-UTR-A-nodosum_M_contig990:274836..274930Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig990 274837..274930 +
1680870528.3343048-UTR-A-nodosum_M_contig990:286456..2864581680870528.3343048-UTR-A-nodosum_M_contig990:286456..286458Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig990 286457..286458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870528.3112867-CDS-A-nodosum_M_contig990:274930..2750681680870528.3112867-CDS-A-nodosum_M_contig990:274930..275068Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig990 274931..275068 +
1680870528.321657-CDS-A-nodosum_M_contig990:286069..2864561680870528.321657-CDS-A-nodosum_M_contig990:286069..286456Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig990 286070..286456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig990.14.1prot_A-nodosum_M_contig990.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig990 274931..286456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig990.14.1

>prot_A-nodosum_M_contig990.14.1 ID=prot_A-nodosum_M_contig990.14.1|Name=mRNA_A-nodosum_M_contig990.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=175bp
MEQNNMGAVEESRGLFAFFFSKALVQTANKDSSLQREEFSSPDFHEVFRI
IKDCLVETGRQTRLRLEHATGWNVLRRLSAGCQILHFTGHGCDQFLAFEA
EEARRCGIMEQLDVKKSDLVNADDACAFSQVCSHLESRKMFSCDSRVSIE
ASTDRLCTLHPPLTLLWDNNITPP*
back to top

mRNA from alignment at A-nodosum_M_contig990:274837..286458+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig990.14.1 ID=mRNA_A-nodosum_M_contig990.14.1|Name=mRNA_A-nodosum_M_contig990.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=11622bp|location=Sequence derived from alignment at A-nodosum_M_contig990:274837..286458+ (Ascophyllum nodosum dioecious)
TCCGAACCTTGCCTGGTCTCCTTCGAGAGACACAACTGCCGTCAAGAATC TACTGGGAGTTGAAGAACTCCATAACAGTACACGCTTCCCGACCATGGAA CAAAATAACATGGGTGCCGTGGAGGAGTCGCGGGGTCTATTTGCTTTCTT CTTCAGCAAGGCCCTGGTGCAGACAGCAAATAAAGACTCATCCTTGCAGC GGGAGGAGTTCAGCTCGCCTGATTTTCACGAGGTACGTTCAATGAGAAAA TCATCTTGAATCTATTACAATCCGTAGGGAAAGAACGCCACCACAACAAT GCATATCACAAAGCCTATAGCAGCGGCCCAGCTTATTCTGTGCTCAGGAT TCGGGACCATGACCACAAACTCAAGCGCAGACGGCTAGGCAGAGCCTGAC TCTTTAAACAGGTAAATCGTATCGATGTCGCTTACTGTACTGCCGGTGCT TTCAACATGCTCACTTCATACCGATGGTGGGTGTAGGAAAGAGAGGCGAA TATTAATTGGTCCATGGTGACCTGCCCAGGCAGCACTCGTTCGGAACTAC CTTGAGGTTTACTGGTCCTGTGTCGGCGGACTCTCGGCAGTGAACGCCAT CGGTACGCAATTGCGTGACCCGATAAACTCGGGACTGACCCGATGGCGTA TGGGGGTTTCATAAATGGCCGCCGCCGCGGAACTCGGGAGGAATCCCGTA AGCACCAGATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCGGGACGG GACGGCTGAACCCGTCTCGTGAGACCAAATTATCAGGCACGCACAGGGAC CGGAGAATATTCATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAA CCTTACCTGGTTGATCCATACTCTGCTATATGTGATAATCATACATACAT ACAATACTCTGCCTTCTCTGAAACAACTACGGTACAGTAGTACTAGAAGA AACATCAGTACGCACAGCAGTTTCAAACAACAGTAGTATGTTGCATCAAA CTATTGAGTCAGTAAGTTTCCCACCACACTATAATATGCATAGGGCATTC TACGTACTTGGTTGTACAAGATTATAGCCCCTACACCACCATCGCTGCAC TAGATATACAAGTATATAATATGAACGATAATGTGTACCCAGGGTAGACA TCTCACCAAAACAATTTTCTGTTTCATCAGCTGCTAGGGATGTAGTAGCT GAGACAGGTGAGTACAGCAGGAACTAACTACTCCTGTATTAGACTAGACT ATTACGGTATACCATATATAGCCAATACTTATTTTCTATGTATCACCGAG GTACAGCTGTGTTACTGCAGACAGTAGTAACGTTGCTGATCGCATGTACA AGCAAGTACGGTACATACATACCACCCACTCTTCACTAACTTGTAATAGT CTAATAATGCAGTAAATTCCCTTCACCTACCTATAACTGGGTAAGGTTAA TCCTCTCGCGGTCAGCTGAACAGGAAAATGAATATTCCCTGTCCCCGTGC CTGCCTGAGAATTTGGTCTCGCGAGACGGGTTTAGCCGTCCCGTCCCGCG TCAGCCTGCTCATCTCCATACTCAGGCTGAATCTGGTGCTTGCTTACGGG ATTCCTCCCGAGTTCCCTGGCGGCGTCCATTTATGAAACCGCCATACGCC ATCAGGTCAGTCCCGAGTTTATCGGGTCACGCAATTGCGTACCGATAGCG TTCACTGCCGAGAGTCCGCCGGCACAGAGCCAGTAAACCTCAAGGTAGTT CCGAACGGGTGCTGCCTTGGCAGATCATCATGGACCAATTAATATTCGCC TCTCTTTCCCGCACCCACTATTGGTATGAAGTGGGCATGCTGAAAGTACC GGCGGTCTACTTGTACAGGAGCCGAGGATGCTTAGTTGGTCTGGTAGTAA TAATATAGTAAGTTGTGACCGGACTGTCGTATTCTTCTCTTCTTGCACAT TAGATCTGAGCGCATCGAGACCCTCTGAGCATCCCTCAGTTAGAggGGGG GGAAATGTCAAAACTTTAGGTGGAATCATAGGCTGCAAAAACAAAACCCG ATGGTAGTAACCTTGGGTCAACAGTATAATACCgGGGAGAAGCCGTCCGT TATCCTGTACACTTAATCGCCATGCCGGGACACCAGGTAAAAGCATTTGT AGTAAATATTAAATTAGGTTTTTAGTAATATACCTGGTACAGTAATAGTG TCATCGACCTTTATACGAAAAAGACCTAAAAGATTTTTCTCTAAAAAAAT AAGGGCTTTTTAGTCTAGAACACAAGCAATGTTACAATATTGTAATTGGT AAAGATAAATGCATTTACGTTTTACAACAAGACCACGGGGAGATTCTACT ACGTGCACAAAATTGTTGTTTCTGCCGTTCTTAGCAGCCACGACGTGAAG TGAAATAAATTCAAATGTGAAAAAAGGAGTGTGAAGTGAAATTTGACGTC GAAAACGACTATTTTGGACGTCCAATATTTTTTTCGACGTCAAAAATACG TTGTAAAAAAGTTAAACATTTTACGTGTCGTACCAATGACGACCCTCCTC GATCGGACGGCTGATATTTTTCAATAGTTTAGCCCTGCAGCAGCAGTGCA GAACACAACTACGGGAGCTAGGGTCTGACTTGGGGGCTTGACACCTGCTG CAAGTGGGTCGATCGGCCGAACGTCGCTACCATAGTTACGTAGACCACAT CAGTAGCGGTTGCTACAGCGTTTACGAGTCTGCCCGAAGCACCCCACGAA GCACCGGGACACAACCGTCTCCCCATGTTGCCTTACGTGGGATGTCAAGC ACAACCCCGATGAAGTACCTACTACTTCCCATCGAGATACATTTGACACT CCGTACTCCGTGGGCTTTAGGCTACGCACAGATCAACACTCGCAGGTTTA CTCCTGCCGAGCTGCCTCATTGTAGTATCGCTGCTGGGTTGTGTGTGGAA CAGCGGCACAGCACCGGTAGACGTGGTAAATCACTGCGTTTTTTTTTAAT ACCGTATACCTGGTACACAGTAACGTCCCGCAGTTATTACCGAATGACTT GTACTGAAGTTGTTGTGCACAGATAGTGATATAAACCCGGATTCTGCTAG CTACACGCGATTGTTCTCTAGTACGTTGCCATGCGATGCACCAGAGCCGC AGTCCCATGGCATCTACAGCACAGCTAACATACATTCGCAGCAAAGCTTG CGGCTGGAGAGACGTGGATTTTGTACAAGAATGCAGTCTTCCAACAGCCA GTCCTTTCCTTTACAGCCGTCGCTTTTCGTGAGATATCGAGCACAGCAGC GCTGATGAAGTTGCTGCTGCCCATCGAGATACATGTGGCAGTCTGTGAGC TTCAGGCGACGCATACCCACAATCGCAGGTTTACTCCTTCAGAACTGCGT CGTTCAAGTATCGCGGCTACGTGGTATGTGGAACAGCGGCGCTGCACTGG CAGGCGTCCACCGCGGTGCAGCAATTCTTTTTTTTAAACAGTAATCATAA TAACGTACAAAACTGACTGTTGCACTAGTATTAAATAGTAATATCAGAGT CAATTGTTGTACTGAATGTTGTTGTGATGTGGGTGGCTGTACGTCGTGCG TTATTCGAATTTGACACTTTAAGTAGAAAGATGCCTCGGCGCCTATAATG GCCGACGTAAAAAGAGAAATAAGTAGAACTTTTGACGTCAAATATTTGTC GTTTTTCGAAAGACGACTTTTTGGTGGCTGCTAAGAACGGCCCTTAGTTG TTGTTTAAACGGCCATTAGTTGTAAAGAAAAATCAGAAATCATATACTGC AAATACAAAGCCTCTTCATGGCATTTAAACGGGTTCTCCTATGGTAGTAA CATTGGGTCAACAGTATAATATCGGGGAGAAGCTCACCGTTATGCTGTAC ATTTACATTAATCGTTATCCTGTACACTTACATTAATCGTTGTTGTTGTT GTTTGTTGtTTCTCACATTCAGCGTATTGGCTGCcaACCCGAAAAAAACT ACTTTACACGGTGGCCAATCCCGCTCGTGGTCTGCTGAACAGGGAAAAAA AAGAAGAAAAAAAAAGTCTGGCAGCGCATTCCCCCCACTCCGCACGCTGC TCGTTCGGAGAAAAAATGAATAAAAATCACGCGACGCATCTACATGTCTA GGCGCTACGCAGGTCGGCGTTACGCAGGTCTCGGTCCGTCTCGCCCGTAC AAGGATTCCCTTCTACTCGTCGGCTAGGCCAATGGATGTCGCTTCGCAAA ATTCTACGCTTCTGTGTGCGATAACAACTTTCCCAATCTCGTTGCCTCTT CCTATTCCTGGCGATGTTTGGCCGCGTCTTCCTCTGCTTTTTCTCCACGC GGCCGCGAACCTCCACCACCCTCGGTGACTGCCTCCACCCCAGCCTTTAA CGCCACCGCTTTCCATTCCCCCGTTATGCCAAACGCCCGGATGTCGCTCT GTACGCAATCGGTCCCTCTTTCTCCTTCCCACCCCGCCCTCTCCGCACTG CACCTCAAGGTTTCGAACATAATTCGCTTTGGCAGCCGCCCACCGCTCAT GCGGATGAGCCTCCAGCCCACAAAAGTCTTCTCGTGCGCGACGTTGTCTC AATGCTCTCGCACTGGGTCATCTCAAGGGCACGGTTGTACGAGGTCATCC GGTCGTCTGGTCTCTTGCGCTGCGCCCCGATGATGCGAAGCAAGACCCGG TGGTGTACCGTGCGGAGTTTGACGTAGTGTTCCTGGCGAAGGGTCCACGT ACTGCATCCATACAGGAGGGCCTCGATTGCCTCTGCCTTTACCATTACGG TATATATTATACACGTAAACTCTGACCTTCACTGTAGTTTACAACTCTTT CATGTTAATTTTAATTATGAAGTCTTTTCATCGAAATAACATATTTAAAC AACGCTACAGATAACTGTTTTCATAGATATATATCAGTCTCAAGAGCCTG TTGTAATTGTGTTGCCCTCACATCTAGTATGTATAGATCCCCTCTGTCGT ACGTAGTATCAACAATGGTTTTTACCCTTCCTATGATCGTATCGCTAAAG TCCCAATTCCCCAGTCCCCATACATCTAATCTCTTAAATTTATACTAGTC TCGAAGGGCCTGTTATAATTTTGAAGCCTCATCGAAATAGAAGTTCTACT GTAGATATGTTTAACTTATCTTGCCTACAACCAACATATTGAAGTCTGAA ACTCTCAGTAACTCTTCCTATTCCATTGTATTCTAGAATTCTTAGTCCAC GTAGATTGTATATTACTTCTAAAACTCATACCTGATAGTGTTCTTTTGTC TTATTTGTTTTGGTGTACCTACATGGTGATTAATGTCAAGTGTACAGTAT GACGGTGGGTTTCTCCCCGAAATTATCTGGGTACTCCTCGGTAACGCTTT ATTTGACGAACACAGACGGAAATGCGATATGCCGGTAATTTTTCGGCGGT AAACGGTTTTTCGTTTTTTGGCGGTAACGACTTTGGCGGAAACGGTAACA CCAAAATATGCCGGTAATTATTCAGCGGTAATGCGATATGCCTGTAATTT TTCGGCGGTAAACGGTTTCTCGTTTTTTGGCGGTAACGGCGTTGGCGGAA ACGGTAACACCAAAATATGTCGGTAATTATTCAGCGGTAAGGCGACATGC CGGTAATTTTTCGGCGGTAAACGGTTTCTCGTTTTTTGGCGGTAACGCGC ACGGAAACTCaAAAGTTGAAAGCAATTATTTAATTATTATTATTTGGCGG TGCATAGCACGCACGTTTTCGTTATTGTTGTCTTCACATTAAAAACCTTT CCGGTCACCTCTCAGTACCCTAAAAATGTCCGTACTGTTCTATCCTACCG GATCGATTTCCGTGGTCACAGGCTACCGAATACCCGTCAGGGGTACAAGA AAATAAAAAACAAAAACAAAATGGATCCAGCCAGAAGAATCAGAGAAGAA TCAAGAATCAACACACAGTAGTAGAAACGAAAACAGGCGAAAAGCTAAGC GGTGCAAAAAGTACCAAAGACATCCACATGTCCATTCGTGGAATCTAAAG CGACAGGTGAATCGACACGTTGGACCTCTCCGCCTGCGCCGCCGCTGACT TCGGTGCACTCCTGGCTACCCTAGCTCGTGCCTGCTCGACAGCGGCGTCC AACGCGCGGACCTCGTCCACCAAGTGTCTGTTCAGCCTAATGAACATCAT GCGCTCAACTTTGTATGCAAGCATGTTACTGCGCAGGTCACCAATGAGGT GGGCGAGCGCTGAAAAGTTTCGCTCAGACTGACAGCTGGTGGCCTCAATC CCAAGGTACAACCGAGCTGTGATGCGATATGGCGGTAATTTTTGGGCGGT AATGCGATATGGTGGTACTTTTTGGGCGGTAATGCGATATGGCGGTACTT TTTCAGCGGTAATGCTATATGGCGGTAATTTTTGGGCGGTAATGCGATAT GGCGGTACTTTTTCAGCGGTAATGCGATATGACGGTAATATTTCCAAGGC TTTACATGGACGGCTGGCGGGACGGTTTAAACCGCCTTTGGCGGGACGGT GTAACGATTTTGCCCCGTCCTGCCAAAAAAATTGCCACCGCCAAAAACAA CCGTCCCGTCCCGGcCCTCGAAAAAAAAAACACCGCCCCGTCCCGTCCCG TCGAAAAAAAAAAAAAGCCACCCCGTCCCGCCTCGGAAAAATAACAAAAC CGCCCCGTCCCGCCTCGAAAAAAAACCCGCCCCGTCCCGCCATGAACAGC AAAATACACCGCCCGAGGGTGGAAACTGGAAACAAATACCACCGCCTGTC TCTTTTCTCTCTTCTTGTTGCACATTTATATCGTATTGCAGTCTAGTACG AAGTATTTTTTAGTTTTTAGTTTTCGGTTGGTGGAGCCTCTCCACCTGGA CACCAACACTCCTCATCTTAGCCTATGCTTGGCCGTGATGGACGCGTACT TGAACCACAGCCGAATAGTGGTGCAGGCCAACCACCACAAGCAGGAGCGG CAGAAGTCCCATCACCGTCGCAGCAGCAGCAGCAGCAGGAGGAGGAGCAG CAGCCAGCGCACCATCTGGCACATCAGATGTTGCTGGCGCTGGGGGCTGG CAAGCATGCGAAAACATCGCCCGTGTGGCTATTAACGAGAGGTTCCTGTC GTAACCGAAGGTGGAAAAACGAGGAGAGCAGTGTCGCGGACGATTCCTGC TACGGAAAAAGCACCTGAGCGCACCGTAGAGTGCGGCTTTGGCGCTCACC TACAGGAGGCAAGGTGCAAGAATTTGCAATTGCGTGTACCATCTCATCGT TTCCAGTCGGCAAAACTGTCAGGGCCATATCATGCACCACCATGACACTT TTCAAAAAATAAAGTTCCCCCGCTTGGCACGCGTATAAACAATACGTCCG GCGCTGAAAACAACCGTTAACCGCCCGTCCCGGCGCTAAAAAAACGCCCG TCCCGGCGCGAAATGGCAAAATAAAACCGCCCGGTCCCGGCGCTGAAAAA CACAACCACCCCGTCCCGTCCCCGCCTCGAAAACAAATACAACCGCCCTG TCCCGCCTCGGAAAAAAACAACCGCCCGTTCCGCCTCGGAAAAAACAACC GCCCCGTCCCTTCGGGAACAAAAACGACCGCCCCGTcCCGCCTGGGAAAA CAACCGCCCCGTcCCGCCTCGaaAAAAAAAACAACCGTCCCGTCCCGCCA AGAATTTTGCCTAGAAAAAAAAACAACCGTCTCGTCCTGCCAAGAATTTC CACCCCTATATTTTGCCAGTCCCGCGCTCCCGCCGAAATGAAAAAGGTGG GTCAACCGTCAATTTTCCCCCCGTCCCGTCCCGTTGAGATTTTAGCCGTC CATGTAAAGCCTTGAATATTTCGGTGGTAAACGGTTGTTGATTTTATCAC GGTAGTTATTCAGCGGTAATGCGATATGCCGGTAATTTTTCAGCGACTAC CGGTTTCTCGTTTTTTGACGGTAACGGCTTTGACGGAAGGGGTAACACCA AAATATGCTGGTAAACCGTCAAATTACCGTATCCGGCTACCAGGGCGGTA ATTTTACCGCGGTAAAATTACCGAGGAGTACCTTGGAAATTATACCGTCG ACCCTATGTGATTACGTTGGGGAAACCTTTTAGTATCATGTAGAATTTTT GTCCTTACAGCCTATGTTCCCGCCTGAACTTTTTGATTGCTCAGTCAGGA GGTTTAGCTGCGTTCAGATTTTTCTTAAAAACTGAGGACTGGTGTATGTA GCTCAAGGGGTCTGGAATTCGAAACACACTTCAAGTACGAAATTTGATTT CCCCGTCCCCGTTCGCGCCTGAGAATTTGGTCTTGTGAGACGGGTTCGGC CGTCCCGTCCCATGTCAGCCTGGTCATTCTTCAGACTCAAGACTGAATCT GGCAAACTACCCTGCCGTTGGTTGTAAATAATTTCTGGAGTTTGAGCGCC GTTCTCTACAAGACGCATAGCTTGTCCGACGCCGCATGCCAAATCTGCTG AGTGAGTCACCACATACGCTTTAGCACACTTTCTTATGCACAAGTGGTTG GTATGTATGTAAAGTCATCACATCGCTCTATAGCAGAGAATGGATCAACC GAGTAAGGTTGCCAATCCTGCTTGTGGTCAGCTGAACAGGGAAAGTGAAT ATTTACATGTTCCCGTTCGCGCCTGAGAATTTGGTCTCGCGAGACAGGTT CGGCCGTCCCGTCCCGTCCCGCGTCAGCCTGCCTATTCTCCACCCTCAGG CTGAAAGGATGATGGGAGATGACCAGGCTTATAGTAAGTATTAATAGTAG TATACCTCCGGTACTTTCAATATGCCCGCTTTAAACCAATAGTGGGTGTG GGAAAAGAGAGGCGCGGTGGTGCAAAGGCAGCACCCGTTACTGGAACTAC CTTGAGGACTACTGGCCCTACACCAGCAGACTCTTGGCAGTGAACGCCAT CGGTACGCAATTGCGTGACCCGCTAAACTCGGGACTGACCCGATGGCGTA TGGCGGTTTTAAACGAATAAATGGATGCCACCACAGAAATCGGGAGGAAT CCCATGAGGAAGCACCAGATTCAGCCTGAGTATGGAGAATGAGCTGGCTG ACGCGGAACGGGACGGCCAAACCCGTCTCGCGAGACCAAATTCTCAGGCG CGAACGGGGACAAGGAGATGTTTATTTTTCTTGTTCAGCTGACCACGTGC AGGGTTGGCAACCTTACCTGGTTGATCCATACTCTGCTATATGCGATGAC CATACATACATATGCCATCGGGTCAGTCCCGAGTTCATCGGGTCACGCAA TTGCGTACCGATGGCGTTCACTGCCGAGAGAGGGCCAGTAAACCTCAAGG TAGCTCCAAACGGGTGCTGCCTTGGCAGGTCACCATGGACCAATTAACAT TCGCCTCTCTTTCCTACACCCACTATTTGGGTGAAGTGGACCTGTACAAA AAGGTATTATTACGGTAGATTACTTGCCGGATGATATTGTGGGGGGGTGT TCCTCATCGTTGATCAACTAGTAATACTCGGTGATCGCGGTACGAGTATA AAGCGAGAACAGGGCTGTACTTGACAGAAACTGGTCGATATCGATATCGA CCAAACCAGAGATATAGTATTGTTATTAAAtagtaccTGGTATCATGTTA CAGGGAGCGATCTGGAGGTGCTCCGAGTGGTGACGACTCTGGAGCTGCCG CTCGTACTATTAATAGTGCATATTTTAATATTCACACGCGATTGTTTCGA GACCGTGAAAGGCTGCGCCAAAAGTGCCGTGGGTGCTCACCCGTGCACTG TGGCGACTTCCCGATCCATCGGGCAATCGCGCTGGCGATTTATGTGCCCA AGCTGGTATCAGCTATATCCAGTACAGCTTCGAGTGCTGCATTTTGTTGC TGTTTTTTTCACTTCTTATTGGTCTACAGTATGTACCTGATACTACGTAC TTGTGTATACCTTATTAATATTAATGGTACAAAAGTACCGTTCCGGTGGC AGTGCTTGAGGTCTGCCTGCTTTGGTAGGACATCGGGCGTCCTGTTCGCA GCCTTCAGTCCAAGTTTTACCTGGCAGTCGAGTTTGTGCTTTTCAGCAGA GTAGACGTTATGGAAAGGAAACTGGAAGCGTAGACCTATTCAAATGCGAG GTGTATTTCAGAGGAGGGGTTCCCACGCCCACGTCGATTCTGCCGACGTT TTTCGACCTTGCTTGCCGGAATGGCGTCGATATGTTGAAAGTGACGCCTG TGTTTAGTATTCCACGGCCCCTGGTTTAGGTCAGCCGATATTCTTCACAT GTCGGAGAGAGGTTGGGTTGCCCCGAGGCCTGTTTTCTCCTGATAATCGA CGAACCTCTGCTTCGCAGTCCTATTTTGCGCTGCGCTCTTTGCTGCAAGT TTGATGATTTGGGTATTGAGACAAACTGATGATCTCTGCCCGGTGCCATC TCCTGGGCATCATGATGAAACGGCTTCTAACGTCTTTCGTCGCGTGGTCT CTTTCGTGATCATCTTTAAATCTATATCTATATCTACTTATTCCTTACAC GAGACACCATCCACCGCAGGACACTCTTGGAGCTCACGGGGCCTCAGGCG TGTCCAACAAACGAGCCCATTTTTAATTCGCAGCTAATACAATGCGTATG CGTCGTCAAAAACACTGGAAATTAGTATAGAAAGTTCCCTAAATAACGAC CCTGAGGGACATAATACCTACTTGGGATGTACTTTGATTCCGGCAACAGG ACTGCTCTTGTATTTGCGCGTGTTTGACCGAAGTCCCTTAGCCCGTTTTG TACTCTCCACTAACTTTTTTCTGTTGGCAGGAGCTTGACGTGGGCCGAAG GAGCTCACGGAAATTAAAAGCTCTTGAATTCGCAAATACAAGTGATCTCT CTCCCCCCCCCTCAACCGTAAAGGATCACACTGACAACATTGATGGAGGG TTATTGGATTGGACCCTATTAATGATATGGGTTACTGCAATTGCCTGGAA GGAGGTAGATACAGCGCCCTGGCACTGAAACGTTTCTCTTCGGCGCGCGA AATGGACATGCGTTTGGGAGAAGGAAGGGAAAAGGTTGTCCGTCGGTATC CAGGAAAGGTGTAACTCGGAGAACGAACTGAGTCGTGGTACCCTTCCGCC AAGGTAAAAATTGTTATCTGCCAACATTCCATGAGACGCTTCTGAAATGT GATCCTGCGCCTCCGTTGCTGCTTTTGACGCAGGTGTTCAGAATAATCAA GGACTGCCTCGTCGAGACGGGGCGCCAAACCCGACTTCGCTTGGAACATG CGACGGGGTGGAATGTGCTAAGGCGCCTCAGTGCTGGTTGTCAGATCCTG CACTTCACAGGGCATGGATGCGATCAGTTCCTGGCGTTCGAGGCCGAGGA AGCCCGGCGTTGCGGCATAATGGAGCAACTTGATGTAAAGAAAAGCGATC TAGTGAACGCAGACGATGCATGCGCGTTTTCTCAAGTCTGTAGCCATTTA GAAAGCCGAAAAATGTTTTCATGCGATTCGAGAGTTTCGATCGAGGCCAG CACCGATCGGcTGTGCACGTTGCATCCTCCATTGACACTCCTGTGGGATA ACAACATAACCCCTCCGTGATG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig990:274837..286458+

>mRNA_A-nodosum_M_contig990.14.1 ID=mRNA_A-nodosum_M_contig990.14.1|Name=mRNA_A-nodosum_M_contig990.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=525bp|location=Sequence derived from alignment at A-nodosum_M_contig990:274837..286458+ (Ascophyllum nodosum dioecious)
ATGGAACAAAATAACATGGGTGCCGTGGAGGAGTCGCGGGGTCTATTTGC
TTTCTTCTTCAGCAAGGCCCTGGTGCAGACAGCAAATAAAGACTCATCCT
TGCAGCGGGAGGAGTTCAGCTCGCCTGATTTTCACGAGGTGTTCAGAATA
ATCAAGGACTGCCTCGTCGAGACGGGGCGCCAAACCCGACTTCGCTTGGA
ACATGCGACGGGGTGGAATGTGCTAAGGCGCCTCAGTGCTGGTTGTCAGA
TCCTGCACTTCACAGGGCATGGATGCGATCAGTTCCTGGCGTTCGAGGCC
GAGGAAGCCCGGCGTTGCGGCATAATGGAGCAACTTGATGTAAAGAAAAG
CGATCTAGTGAACGCAGACGATGCATGCGCGTTTTCTCAAGTCTGTAGCC
ATTTAGAAAGCCGAAAAATGTTTTCATGCGATTCGAGAGTTTCGATCGAG
GCCAGCACCGATCGGcTGTGCACGTTGCATCCTCCATTGACACTCCTGTG
GGATAACAACATAACCCCTCCGTGA
back to top