prot_A-nodosum_M_contig9845.2.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9845.2.2
Unique Nameprot_A-nodosum_M_contig9845.2.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length39
Homology
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: D8LD43_ECTSI (Small nuclear ribonucleoprotein E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD43_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 5.520e-15
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 38
            Y NLVLDEAEEVDMK+DERK+LGRIMLKGDTITLMQSV
Sbjct:   58 YMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 95          
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: A0A672ZVX5_9TELE (Small nuclear ribonucleoprotein E n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A672ZVX5_9TELE)

HSP 1 Score: 58.2 bits (139), Expect = 1.890e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 38
            Y NLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:   12 YMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 49          
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: A0A665WPI4_ECHNA (Small nuclear ribonucleoprotein E n=1 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665WPI4_ECHNA)

HSP 1 Score: 58.2 bits (139), Expect = 2.070e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 38
            Y NLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:   16 YMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 53          
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: A0A8D3B629_SCOMX (Small nuclear ribonucleoprotein E n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3B629_SCOMX)

HSP 1 Score: 58.2 bits (139), Expect = 2.500e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 38
            Y NLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:   24 YMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 61          
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: A0A4W6FIC7_LATCA (Small nuclear ribonucleoprotein E n=1 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6FIC7_LATCA)

HSP 1 Score: 58.2 bits (139), Expect = 2.750e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 38
            Y NLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:   28 YMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 65          
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: A0A673WRP4_SALTR (Small nuclear ribonucleoprotein E n=2 Tax=Euteleosteomorpha TaxID=1489388 RepID=A0A673WRP4_SALTR)

HSP 1 Score: 58.2 bits (139), Expect = 2.890e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 38
            Y NLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:   30 YMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 67          
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: A0A803K769_XENTR (Small nuclear ribonucleoprotein E n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A803K769_XENTR)

HSP 1 Score: 57.8 bits (138), Expect = 2.950e-10
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 0
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 38
            Y NLVLD+AEE+ +K+  RK+LGRIMLKGD ITL+QSV
Sbjct:   16 YMNLVLDDAEEIHLKTKSRKQLGRIMLKGDNITLLQSV 53          
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: A0A3Q1HH70_ANATE (Small nuclear ribonucleoprotein E n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1HH70_ANATE)

HSP 1 Score: 58.2 bits (139), Expect = 2.960e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 38
            Y NLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:   31 YMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 68          
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: A0A140LG21_DANRE (Small nuclear ribonucleoprotein E n=28 Tax=Clupeocephala TaxID=186625 RepID=A0A140LG21_DANRE)

HSP 1 Score: 58.2 bits (139), Expect = 3.030e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 38
            Y NLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:   32 YMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 69          
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: UPI0018F29080 (small nuclear ribonucleoprotein E n=2 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F29080)

HSP 1 Score: 58.5 bits (140), Expect = 3.550e-10
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 38
            Y NLVLD+AEE+ MKS  RK LGR+MLKGD ITL+QSV
Sbjct:   53 YMNLVLDDAEEIHMKSKSRKPLGRVMLKGDNITLLQSV 90          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD43_ECTSI5.520e-1592.11Small nuclear ribonucleoprotein E n=2 Tax=Ectocarp... [more]
A0A672ZVX5_9TELE1.890e-1076.32Small nuclear ribonucleoprotein E n=1 Tax=Sphaeram... [more]
A0A665WPI4_ECHNA2.070e-1076.32Small nuclear ribonucleoprotein E n=1 Tax=Echeneis... [more]
A0A8D3B629_SCOMX2.500e-1076.32Small nuclear ribonucleoprotein E n=1 Tax=Scophtha... [more]
A0A4W6FIC7_LATCA2.750e-1076.32Small nuclear ribonucleoprotein E n=1 Tax=Lates ca... [more]
A0A673WRP4_SALTR2.890e-1076.32Small nuclear ribonucleoprotein E n=2 Tax=Euteleos... [more]
A0A803K769_XENTR2.950e-1071.05Small nuclear ribonucleoprotein E n=1 Tax=Xenopus ... [more]
A0A3Q1HH70_ANATE2.960e-1076.32Small nuclear ribonucleoprotein E n=1 Tax=Anabas t... [more]
A0A140LG21_DANRE3.030e-1076.32Small nuclear ribonucleoprotein E n=28 Tax=Clupeoc... [more]
UPI0018F290803.550e-1073.68small nuclear ribonucleoprotein E n=2 Tax=Scyliorh... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 1..38
e-value: 2.0E-12
score: 48.8
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 1..36
e-value: 5.6E-8
score: 32.4
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 1..36

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9845contigA-nodosum_M_contig9845:4990..5977 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9845.2.2mRNA_A-nodosum_M_contig9845.2.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9845 4990..5977 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9845.2.2 ID=prot_A-nodosum_M_contig9845.2.2|Name=mRNA_A-nodosum_M_contig9845.2.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=39bp
YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf