mRNA_A-nodosum_M_contig9845.2.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9845.2.2
Unique NamemRNA_A-nodosum_M_contig9845.2.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: D8LD43_ECTSI (Small nuclear ribonucleoprotein E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD43_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 5.520e-15
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 114
            Y NLVLDEAEEVDMK+DERK+LGRIMLKGDTITLMQSV
Sbjct:   58 YMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 95
[Close]
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: A0A672ZVX5_9TELE (Small nuclear ribonucleoprotein E n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A672ZVX5_9TELE)

HSP 1 Score: 58.2 bits (139), Expect = 1.890e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 114
            Y NLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:   12 YMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 49
[Close]
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: A0A665WPI4_ECHNA (Small nuclear ribonucleoprotein E n=1 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665WPI4_ECHNA)

HSP 1 Score: 58.2 bits (139), Expect = 2.070e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 114
            Y NLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:   16 YMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 53
[Close]
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: A0A8D3B629_SCOMX (Small nuclear ribonucleoprotein E n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3B629_SCOMX)

HSP 1 Score: 58.2 bits (139), Expect = 2.500e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 114
            Y NLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:   24 YMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 61
[Close]
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: A0A4W6FIC7_LATCA (Small nuclear ribonucleoprotein E n=1 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6FIC7_LATCA)

HSP 1 Score: 58.2 bits (139), Expect = 2.750e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 114
            Y NLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:   28 YMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 65
[Close]
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: A0A673WRP4_SALTR (Small nuclear ribonucleoprotein E n=2 Tax=Euteleosteomorpha TaxID=1489388 RepID=A0A673WRP4_SALTR)

HSP 1 Score: 58.2 bits (139), Expect = 2.890e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 114
            Y NLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:   30 YMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 67
[Close]
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: A0A803K769_XENTR (Small nuclear ribonucleoprotein E n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A803K769_XENTR)

HSP 1 Score: 57.8 bits (138), Expect = 2.950e-10
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 114
            Y NLVLD+AEE+ +K+  RK+LGRIMLKGD ITL+QSV
Sbjct:   16 YMNLVLDDAEEIHLKTKSRKQLGRIMLKGDNITLLQSV 53
[Close]
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: A0A3Q1HH70_ANATE (Small nuclear ribonucleoprotein E n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1HH70_ANATE)

HSP 1 Score: 58.2 bits (139), Expect = 2.960e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 114
            Y NLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:   31 YMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 68
[Close]
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: A0A140LG21_DANRE (Small nuclear ribonucleoprotein E n=28 Tax=Clupeocephala TaxID=186625 RepID=A0A140LG21_DANRE)

HSP 1 Score: 58.2 bits (139), Expect = 3.030e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 114
            Y NLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:   32 YMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 69
[Close]
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Match: UPI0018F29080 (small nuclear ribonucleoprotein E n=2 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F29080)

HSP 1 Score: 58.5 bits (140), Expect = 3.550e-10
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV 114
            Y NLVLD+AEE+ MKS  RK LGR+MLKGD ITL+QSV
Sbjct:   53 YMNLVLDDAEEIHMKSKSRKPLGRVMLKGDNITLLQSV 90
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9845.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD43_ECTSI5.520e-1592.11Small nuclear ribonucleoprotein E n=2 Tax=Ectocarp... [more]
A0A672ZVX5_9TELE1.890e-1076.32Small nuclear ribonucleoprotein E n=1 Tax=Sphaeram... [more]
A0A665WPI4_ECHNA2.070e-1076.32Small nuclear ribonucleoprotein E n=1 Tax=Echeneis... [more]
A0A8D3B629_SCOMX2.500e-1076.32Small nuclear ribonucleoprotein E n=1 Tax=Scophtha... [more]
A0A4W6FIC7_LATCA2.750e-1076.32Small nuclear ribonucleoprotein E n=1 Tax=Lates ca... [more]
A0A673WRP4_SALTR2.890e-1076.32Small nuclear ribonucleoprotein E n=2 Tax=Euteleos... [more]
A0A803K769_XENTR2.950e-1071.05Small nuclear ribonucleoprotein E n=1 Tax=Xenopus ... [more]
A0A3Q1HH70_ANATE2.960e-1076.32Small nuclear ribonucleoprotein E n=1 Tax=Anabas t... [more]
A0A140LG21_DANRE3.030e-1076.32Small nuclear ribonucleoprotein E n=28 Tax=Clupeoc... [more]
UPI0018F290803.550e-1073.68small nuclear ribonucleoprotein E n=2 Tax=Scyliorh... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9845contigA-nodosum_M_contig9845:4990..5977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LD43
Preferred nameSNRPE
PFAMsLSM
Model size117
Max annot lvl2759|Eukaryota
KEGG koko:K11097,ko:K12272,ko:K18754
KEGG TC3.A.5.8
KEGG Pathwayko03040,ko03060,map03040,map03060
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005697,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0035770,GO:0036464,GO:0042303,GO:0042633,GO:0043021,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045292,GO:0045495,GO:0046483,GO:0046540,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060293,GO:0065003,GO:0070013,GO:0070990,GO:0071004,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:1990446,GO:1990904
Exons2
Evalue9.05e-16
EggNOG OGsCOG1958@1|root,KOG1774@2759|Eukaryota
Descriptionspliceosomal snRNP assembly
Cds size117
COG categoryK
BRITEko00000,ko00001,ko00002,ko02044,ko03019,ko03032,ko03041,ko04031
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870518.1898606-CDS-A-nodosum_M_contig9845:4989..50221680870518.1898606-CDS-A-nodosum_M_contig9845:4989..5022Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9845 4990..5022 +
1680870518.2112699-CDS-A-nodosum_M_contig9845:5893..59771680870518.2112699-CDS-A-nodosum_M_contig9845:5893..5977Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9845 5894..5977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9845.2.2prot_A-nodosum_M_contig9845.2.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9845 4990..5977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9845.2.2

>prot_A-nodosum_M_contig9845.2.2 ID=prot_A-nodosum_M_contig9845.2.2|Name=mRNA_A-nodosum_M_contig9845.2.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=39bp
YTNLVLDEAEEVDMKSDERKELGRIMLKGDTITLMQSV*
back to top

mRNA from alignment at A-nodosum_M_contig9845:4990..5977+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9845.2.2 ID=mRNA_A-nodosum_M_contig9845.2.2|Name=mRNA_A-nodosum_M_contig9845.2.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=988bp|location=Sequence derived from alignment at A-nodosum_M_contig9845:4990..5977+ (Ascophyllum nodosum dioecious)
TACACGAATCTGGTGCTGGATGAGGCGGAGGAGGTGAGGTTGCTATTAAT
CCTATTAATCGTATTTATACTATTAATAATGTACTGCTGTACTTGTTTGC
CACTGTATCCTCAGGATGGGCTTAATATTAATTCATTTACTGTAATACCA
TACATTGTATAAATATGGTTATACCTGGTATGCCTGTGCCTCGGTTGGTT
TGCACGGTATATAAATATATATATATATATTCTAATATATATATATATAC
TAAAGTGTATACGACAGTACAGTAAAATGCTCACCCGGGTGCTTCTATTA
ATAATAAGCGCATTATAGTCGATCATTGATCTGCCTGCTCTGAAATCTCC
GTTGAATACGTTTTTTCGTTTTTTTGGGGCTGTTTTCTTTTCTTTTCTCT
GTTGTGTATATTATTAAATAGCTACTACGGCATATTACAGTATATTGGAA
TATAGAGCTCTAGAGCTGTATCAGGTACTATTAATATATAAAAGGGGTAT
ATTTGTTCCTACCATACTGGTATATATTATGTACATAAACAGGAATGAAG
ATACAGTATGTACTCCGTACTATTAATTAATAGGTACTGTACCATAGATT
ATTATTAATTGTAGTATCATACTCCGTATAATATTATTATTTAGTATTAT
TATTTAGTACTAATACGAGTAGTTTATTTTGTTTGTAGACGGAACGTCGA
TTGGAATCCCAACCGCCTTAGCAAGCCTGTCAAATTTCCACAGCAATCCA
AAAAGCATTTCGAAATGACGACAGACGACATTTAAATAGTGGATAGTGGG
CTCTTTCTGATCTATCATACCTCAGCGAAGTTGAGTGAGTATATCAGTAC
ATCACATCTCAGCGGTTTTCCAACGCCCAACGCCCAACATCGTTTTGGTG
ACAGGTGGACATGAAAAGCGACGAACGCAAGGAGCTGGGGCGGATCATGC
TAAAGGGCGACACCATAACCCTCATGCAGAGCGTGTAA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig9845:4990..5977+

>mRNA_A-nodosum_M_contig9845.2.2 ID=mRNA_A-nodosum_M_contig9845.2.2|Name=mRNA_A-nodosum_M_contig9845.2.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=117bp|location=Sequence derived from alignment at A-nodosum_M_contig9845:4990..5977+ (Ascophyllum nodosum dioecious)
TACACGAATCTGGTGCTGGATGAGGCGGAGGAGGTGGACATGAAAAGCGA
CGAACGCAAGGAGCTGGGGCGGATCATGCTAAAGGGCGACACCATAACCC
TCATGCAGAGCGTGTAA
back to top