prot_A-nodosum_M_contig9845.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9845.1.1
Unique Nameprot_A-nodosum_M_contig9845.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length51
Homology
BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: D8LD43_ECTSI (Small nuclear ribonucleoprotein E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD43_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.080e-18
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    5 IFLFVATQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 49
            IF F+   RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV
Sbjct:   26 IFRFLQN-RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 69          
BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: A0A835YX06_9STRA (Small nuclear ribonucleoprotein E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX06_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.940e-16
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0
Query:    5 IFLFVATQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 49
            IF F+   RTRVQIWLYENT MRIEG+I GFDEYMNLVLDEAEEV
Sbjct:   28 IFRFLQN-RTRVQIWLYENTTMRIEGRISGFDEYMNLVLDEAEEV 71          
BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: A0A7L1XYB1_9AVES (Small nuclear ribonucleoprotein E (Fragment) n=1 Tax=Thinocorus orbignyianus TaxID=161742 RepID=A0A7L1XYB1_9AVES)

HSP 1 Score: 73.6 bits (179), Expect = 7.800e-16
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 0
Query:    3 PSIFLFVATQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 49
            P +  F+  QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+
Sbjct:   22 PVLLFFIILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI 68          
BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: R1EMN3_EMIHU (Small nuclear ribonucleoprotein E n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EMN3_EMIHU)

HSP 1 Score: 72.8 bits (177), Expect = 1.280e-15
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    5 IFLFVATQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 49
            IF F+   +TRVQIWLYENT++RIEG+I+GFDEYMNLVLDEAEE+
Sbjct:   16 IFRFLQN-KTRVQIWLYENTELRIEGKIIGFDEYMNLVLDEAEEL 59          
BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: A0A0L0G295_9EUKA (Small nuclear ribonucleoprotein E n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G295_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 7.000e-15
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 0
Query:    1 VLPSIFLFVATQ-RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 49
            VLP   +F   Q + R+Q+WL+EN+ MRIEGQ++GFDEYMNLVLDEAEEV
Sbjct:   10 VLPINMVFRLLQSKARIQVWLFENSSMRIEGQLMGFDEYMNLVLDEAEEV 59          
BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: A0A7L3KDL0_9PASS (Small nuclear ribonucleoprotein E (Fragment) n=1 Tax=Drymodes brunneopygia TaxID=626378 RepID=A0A7L3KDL0_9PASS)

HSP 1 Score: 69.7 bits (169), Expect = 9.410e-15
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 0
Query:    7 LFVATQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 49
            LF  +QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+
Sbjct:    2 LFHHSQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI 44          
BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: A0A6G1ANE9_CROCR (Small nuclear ribonucleoprotein E (Fragment) n=1 Tax=Crocuta crocuta TaxID=9678 RepID=A0A6G1ANE9_CROCR)

HSP 1 Score: 69.7 bits (169), Expect = 1.040e-14
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 0
Query:    3 PSIFLFVAT-QRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 49
            P  +LF+   QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+
Sbjct:    1 PLTYLFLQLFQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI 48          
BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: F4P9I9_BATDJ (Small nuclear ribonucleoprotein E n=3 Tax=Batrachochytrium TaxID=100474 RepID=F4P9I9_BATDJ)

HSP 1 Score: 70.5 bits (171), Expect = 1.130e-14
Identity = 31/38 (81.58%), Postives = 37/38 (97.37%), Query Frame = 0
Query:   12 QRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 49
            Q++RVQIWLYE T++RIEGQILGFDE+MNLVLD+AEEV
Sbjct:   22 QKSRVQIWLYEQTEIRIEGQILGFDEFMNLVLDDAEEV 59          
BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: A0A7K7A7F7_9AVES (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Nothoprocta TaxID=8806 RepID=A0A7K7A7F7_9AVES)

HSP 1 Score: 70.5 bits (171), Expect = 1.130e-14
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = 0
Query:    9 VATQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 49
            +A+QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+
Sbjct:   23 IASQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI 63          
BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: A0A1D1VCY0_RAMVA (Small nuclear ribonucleoprotein E n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VCY0_RAMVA)

HSP 1 Score: 70.5 bits (171), Expect = 1.350e-14
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 0
Query:   12 QRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEE 48
            ++ RVQ+WLYENTKMRIEG I+GFDEYMNLVLD+AEE
Sbjct:   26 EKARVQVWLYENTKMRIEGVIIGFDEYMNLVLDQAEE 62          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD43_ECTSI2.080e-1888.89Small nuclear ribonucleoprotein E n=2 Tax=Ectocarp... [more]
A0A835YX06_9STRA5.940e-1682.22Small nuclear ribonucleoprotein E n=1 Tax=Tribonem... [more]
A0A7L1XYB1_9AVES7.800e-1663.83Small nuclear ribonucleoprotein E (Fragment) n=1 T... [more]
R1EMN3_EMIHU1.280e-1575.56Small nuclear ribonucleoprotein E n=1 Tax=Emiliani... [more]
A0A0L0G295_9EUKA7.000e-1566.00Small nuclear ribonucleoprotein E n=1 Tax=Sphaerof... [more]
A0A7L3KDL0_9PASS9.410e-1569.77Small nuclear ribonucleoprotein E (Fragment) n=1 T... [more]
A0A6G1ANE9_CROCR1.040e-1464.58Small nuclear ribonucleoprotein E (Fragment) n=1 T... [more]
F4P9I9_BATDJ1.130e-1481.58Small nuclear ribonucleoprotein E n=3 Tax=Batracho... [more]
A0A7K7A7F7_9AVES1.130e-1470.73Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]
A0A1D1VCY0_RAMVA1.350e-1481.08Small nuclear ribonucleoprotein E n=1 Tax=Ramazzot... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 14..49
e-value: 6.3E-9
score: 35.4
NoneNo IPR availableGENE3D2.30.30.100coord: 2..50
e-value: 1.5E-17
score: 65.2
NoneNo IPR availablePANTHERPTHR11193:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 5..49
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 5..49
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9845contigA-nodosum_M_contig9845:4446..4598 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9845.1.1mRNA_A-nodosum_M_contig9845.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9845 4446..4598 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9845.1.1 ID=prot_A-nodosum_M_contig9845.1.1|Name=mRNA_A-nodosum_M_contig9845.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=51bp
VLPSIFLFVATQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVR
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027078snRNP-E
IPR010920LSM_dom_sf