mRNA_A-nodosum_M_contig9845.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9845.1.1
Unique NamemRNA_A-nodosum_M_contig9845.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: D8LD43_ECTSI (Small nuclear ribonucleoprotein E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD43_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.080e-18
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:   13 IFLFVATQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 147
            IF F+   RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV
Sbjct:   26 IFRFLQN-RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 69
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BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: A0A835YX06_9STRA (Small nuclear ribonucleoprotein E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX06_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.940e-16
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:   13 IFLFVATQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 147
            IF F+   RTRVQIWLYENT MRIEG+I GFDEYMNLVLDEAEEV
Sbjct:   28 IFRFLQN-RTRVQIWLYENTTMRIEGRISGFDEYMNLVLDEAEEV 71
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BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: A0A7L1XYB1_9AVES (Small nuclear ribonucleoprotein E (Fragment) n=1 Tax=Thinocorus orbignyianus TaxID=161742 RepID=A0A7L1XYB1_9AVES)

HSP 1 Score: 73.6 bits (179), Expect = 7.800e-16
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    7 PSIFLFVATQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 147
            P +  F+  QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+
Sbjct:   22 PVLLFFIILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI 68
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BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: R1EMN3_EMIHU (Small nuclear ribonucleoprotein E n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EMN3_EMIHU)

HSP 1 Score: 72.8 bits (177), Expect = 1.280e-15
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:   13 IFLFVATQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 147
            IF F+   +TRVQIWLYENT++RIEG+I+GFDEYMNLVLDEAEE+
Sbjct:   16 IFRFLQN-KTRVQIWLYENTELRIEGKIIGFDEYMNLVLDEAEEL 59
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BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: A0A0L0G295_9EUKA (Small nuclear ribonucleoprotein E n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G295_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 7.000e-15
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 VLPSIFLFVATQ-RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 147
            VLP   +F   Q + R+Q+WL+EN+ MRIEGQ++GFDEYMNLVLDEAEEV
Sbjct:   10 VLPINMVFRLLQSKARIQVWLFENSSMRIEGQLMGFDEYMNLVLDEAEEV 59
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BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: A0A7L3KDL0_9PASS (Small nuclear ribonucleoprotein E (Fragment) n=1 Tax=Drymodes brunneopygia TaxID=626378 RepID=A0A7L3KDL0_9PASS)

HSP 1 Score: 69.7 bits (169), Expect = 9.410e-15
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   19 LFVATQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 147
            LF  +QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+
Sbjct:    2 LFHHSQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI 44
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BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: A0A6G1ANE9_CROCR (Small nuclear ribonucleoprotein E (Fragment) n=1 Tax=Crocuta crocuta TaxID=9678 RepID=A0A6G1ANE9_CROCR)

HSP 1 Score: 69.7 bits (169), Expect = 1.040e-14
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    7 PSIFLFVAT-QRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 147
            P  +LF+   QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+
Sbjct:    1 PLTYLFLQLFQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI 48
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BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: F4P9I9_BATDJ (Small nuclear ribonucleoprotein E n=3 Tax=Batrachochytrium TaxID=100474 RepID=F4P9I9_BATDJ)

HSP 1 Score: 70.5 bits (171), Expect = 1.130e-14
Identity = 31/38 (81.58%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:   34 QRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 147
            Q++RVQIWLYE T++RIEGQILGFDE+MNLVLD+AEEV
Sbjct:   22 QKSRVQIWLYEQTEIRIEGQILGFDEFMNLVLDDAEEV 59
[Close]
BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: A0A7K7A7F7_9AVES (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Nothoprocta TaxID=8806 RepID=A0A7K7A7F7_9AVES)

HSP 1 Score: 70.5 bits (171), Expect = 1.130e-14
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   25 VATQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 147
            +A+QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+
Sbjct:   23 IASQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI 63
[Close]
BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Match: A0A1D1VCY0_RAMVA (Small nuclear ribonucleoprotein E n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VCY0_RAMVA)

HSP 1 Score: 70.5 bits (171), Expect = 1.350e-14
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:   34 QRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEE 144
            ++ RVQ+WLYENTKMRIEG I+GFDEYMNLVLD+AEE
Sbjct:   26 EKARVQVWLYENTKMRIEGVIIGFDEYMNLVLDQAEE 62
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9845.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD43_ECTSI2.080e-1888.89Small nuclear ribonucleoprotein E n=2 Tax=Ectocarp... [more]
A0A835YX06_9STRA5.940e-1682.22Small nuclear ribonucleoprotein E n=1 Tax=Tribonem... [more]
A0A7L1XYB1_9AVES7.800e-1663.83Small nuclear ribonucleoprotein E (Fragment) n=1 T... [more]
R1EMN3_EMIHU1.280e-1575.56Small nuclear ribonucleoprotein E n=1 Tax=Emiliani... [more]
A0A0L0G295_9EUKA7.000e-1566.00Small nuclear ribonucleoprotein E n=1 Tax=Sphaerof... [more]
A0A7L3KDL0_9PASS9.410e-1569.77Small nuclear ribonucleoprotein E (Fragment) n=1 T... [more]
A0A6G1ANE9_CROCR1.040e-1464.58Small nuclear ribonucleoprotein E (Fragment) n=1 T... [more]
F4P9I9_BATDJ1.130e-1481.58Small nuclear ribonucleoprotein E n=3 Tax=Batracho... [more]
A0A7K7A7F7_9AVES1.130e-1470.73Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]
A0A1D1VCY0_RAMVA1.350e-1481.08Small nuclear ribonucleoprotein E n=1 Tax=Ramazzot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9845contigA-nodosum_M_contig9845:4446..4598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LD43
Preferred nameSNRPE
PFAMsLSM
Model size153
Max annot lvl2759|Eukaryota
KEGG koko:K11097,ko:K12272,ko:K18754
KEGG TC3.A.5.8
KEGG Pathwayko03040,ko03060,map03040,map03060
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005697,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0035770,GO:0036464,GO:0042303,GO:0042633,GO:0043021,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045292,GO:0045495,GO:0046483,GO:0046540,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060293,GO:0065003,GO:0070013,GO:0070990,GO:0071004,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:1990446,GO:1990904
Exons1
Evalue3.41e-19
EggNOG OGsCOG1958@1|root,KOG1774@2759|Eukaryota
Descriptionspliceosomal snRNP assembly
Cds size153
COG categoryK
BRITEko00000,ko00001,ko00002,ko02044,ko03019,ko03032,ko03041,ko04031
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870518.152299-CDS-A-nodosum_M_contig9845:4445..45981680870518.152299-CDS-A-nodosum_M_contig9845:4445..4598Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9845 4446..4598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9845.1.1prot_A-nodosum_M_contig9845.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9845 4446..4598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9845.1.1

>prot_A-nodosum_M_contig9845.1.1 ID=prot_A-nodosum_M_contig9845.1.1|Name=mRNA_A-nodosum_M_contig9845.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=51bp
VLPSIFLFVATQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVR
*
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mRNA from alignment at A-nodosum_M_contig9845:4446..4598+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9845.1.1 ID=mRNA_A-nodosum_M_contig9845.1.1|Name=mRNA_A-nodosum_M_contig9845.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at A-nodosum_M_contig9845:4446..4598+ (Ascophyllum nodosum dioecious)
GTCTTGCCATCCATTTTTTTATTTGTCGCCACGCAGCGAACGAGGGTTCA
GATTTGGTTGTACGAGAACACCAAAATGCGGATAGAGGGACAGATTCTGG
GATTCGACGAGTACATGAATCTCGTGTTGGATGAGGCGGAGGAGGTGAGG
TGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9845:4446..4598+

>mRNA_A-nodosum_M_contig9845.1.1 ID=mRNA_A-nodosum_M_contig9845.1.1|Name=mRNA_A-nodosum_M_contig9845.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=153bp|location=Sequence derived from alignment at A-nodosum_M_contig9845:4446..4598+ (Ascophyllum nodosum dioecious)
GTCTTGCCATCCATTTTTTTATTTGTCGCCACGCAGCGAACGAGGGTTCA
GATTTGGTTGTACGAGAACACCAAAATGCGGATAGAGGGACAGATTCTGG
GATTCGACGAGTACATGAATCTCGTGTTGGATGAGGCGGAGGAGGTGAGG
TGA
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