prot_A-nodosum_M_contig966.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig966.1.1
Unique Nameprot_A-nodosum_M_contig966.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length107
Homology
BLAST of mRNA_A-nodosum_M_contig966.1.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.460e-10
Identity = 43/103 (41.75%), Postives = 54/103 (52.43%), Query Frame = 0
Query:    8 LPL-PRSHESGVDDVLLRAWGNISLWEHVEEFLVLMRLPLKASCETMDRFNVMEQLRE--EWGVVAKWEFDHGRAPYGLVERLVASCHAIGNVVTGTCWRGGA 107
            LPL P S   G    L     NIS     ++ LV+MRLP     E   +  + +Q+R   +  V   W FD    PYGLVER++ASCHA+G V  G CWR GA
Sbjct:  604 LPLEPASLLPGSGRALATGRPNISR----QDMLVIMRLPETCGAEHELQELISDQMRRHSDREVTLMWRFDSAGPPYGLVERVIASCHAVGVVEMGLCWRYGA 702          
BLAST of mRNA_A-nodosum_M_contig966.1.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.980e-10
Identity = 32/71 (45.07%), Postives = 40/71 (56.34%), Query Frame = 0
Query:   37 EFLVLMRLPLKASCETMDRFNVMEQLREEWGVVAKWEFDHGRAPYGLVERLVASCHAIGNVVTGTCWRGGA 107
            + LV+MRL    +      F+ +        V  KWEFD    PYGL+ERL+ASCH +G V TG CWR GA
Sbjct:  482 DMLVIMRLSETCNEHQRTLFDGLASKMPRDRVTLKWEFDKAGPPYGLIERLIASCHVLGEVETGACWRYGA 552          
BLAST of mRNA_A-nodosum_M_contig966.1.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 6.180e-9
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 0
Query:   36 EEFLVLMRLPLKASCETMDRFNVMEQLR---EEWG---VVAKWEFDHGRAPYGLVERLVASCHAIGNVVTGTCWRGGA 107
            ++ LV+MRLP   +CE   +  + E +R   E  G   V  KW FD   A +GLVER++ASCH +G+V +G CWR GA
Sbjct:  787 QDMLVIMRLP--DTCEENIQGELQELVRDLSERHGGNEVTLKWRFDGAGASHGLVERVIASCHEVGSVRSGLCWRYGA 862          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig966.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JW02_9PHAE1.460e-1041.75Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K8T1_9PHAE1.980e-1045.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVX5_ECTSI6.180e-944.87LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig966contigA-nodosum_M_contig966:83480..83800 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig966.1.1mRNA_A-nodosum_M_contig966.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig966 83478..83800 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig966.1.1 ID=prot_A-nodosum_M_contig966.1.1|Name=mRNA_A-nodosum_M_contig966.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=107bp
ACQAWHFLPLPRSHESGVDDVLLRAWGNISLWEHVEEFLVLMRLPLKASC
ETMDRFNVMEQLREEWGVVAKWEFDHGRAPYGLVERLVASCHAIGNVVTG
TCWRGGA
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