mRNA_A-nodosum_M_contig966.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig966.1.1
Unique NamemRNA_A-nodosum_M_contig966.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig966.1.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.460e-10
Identity = 43/103 (41.75%), Postives = 54/103 (52.43%), Query Frame = 1 
Query:   22 LPL-PRSHESGVDDVLLRAWGNISLWEHVEEFLVLMRLPLKASCETMDRFNVMEQLRE--EWGVVAKWEFDHGRAPYGLVERLVASCHAIGNVVTGTCWRGGA 321
            LPL P S   G    L     NIS     ++ LV+MRLP     E   +  + +Q+R   +  V   W FD    PYGLVER++ASCHA+G V  G CWR GA
Sbjct:  604 LPLEPASLLPGSGRALATGRPNISR----QDMLVIMRLPETCGAEHELQELISDQMRRHSDREVTLMWRFDSAGPPYGLVERVIASCHAVGVVEMGLCWRYGA 702
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BLAST of mRNA_A-nodosum_M_contig966.1.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.980e-10
Identity = 32/71 (45.07%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:  109 EFLVLMRLPLKASCETMDRFNVMEQLREEWGVVAKWEFDHGRAPYGLVERLVASCHAIGNVVTGTCWRGGA 321
            + LV+MRL    +      F+ +        V  KWEFD    PYGL+ERL+ASCH +G V TG CWR GA
Sbjct:  482 DMLVIMRLSETCNEHQRTLFDGLASKMPRDRVTLKWEFDKAGPPYGLIERLIASCHVLGEVETGACWRYGA 552
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BLAST of mRNA_A-nodosum_M_contig966.1.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 6.180e-9
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:  106 EEFLVLMRLPLKASCETMDRFNVMEQLR---EEWG---VVAKWEFDHGRAPYGLVERLVASCHAIGNVVTGTCWRGGA 321
            ++ LV+MRLP   +CE   +  + E +R   E  G   V  KW FD   A +GLVER++ASCH +G+V +G CWR GA
Sbjct:  787 QDMLVIMRLP--DTCEENIQGELQELVRDLSERHGGNEVTLKWRFDGAGASHGLVERVIASCHEVGSVRSGLCWRYGA 862
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig966.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JW02_9PHAE1.460e-1041.75Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K8T1_9PHAE1.980e-1045.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVX5_ECTSI6.180e-944.87LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig966contigA-nodosum_M_contig966:83478..83800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FVX5
Preferred nameSLITRK2
PFAMsLRR_8
Model size324
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026
Exons1
Evalue1.01e-09
EggNOG OGs2CMPC@1|root,2QR6C@2759|Eukaryota
Descriptionpositive regulation of synapse assembly
Cds size321
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870482.68578-CDS-A-nodosum_M_contig966:83479..838001680870482.68578-CDS-A-nodosum_M_contig966:83479..83800Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig966 83480..83800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig966.1.1prot_A-nodosum_M_contig966.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig966 83480..83800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig966.1.1

>prot_A-nodosum_M_contig966.1.1 ID=prot_A-nodosum_M_contig966.1.1|Name=mRNA_A-nodosum_M_contig966.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=107bp
ACQAWHFLPLPRSHESGVDDVLLRAWGNISLWEHVEEFLVLMRLPLKASC
ETMDRFNVMEQLREEWGVVAKWEFDHGRAPYGLVERLVASCHAIGNVVTG
TCWRGGA
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mRNA from alignment at A-nodosum_M_contig966:83478..83800-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig966.1.1 ID=mRNA_A-nodosum_M_contig966.1.1|Name=mRNA_A-nodosum_M_contig966.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=323bp|location=Sequence derived from alignment at A-nodosum_M_contig966:83478..83800- (Ascophyllum nodosum dioecious)
GCTTGTCAAGCTTGGCATTTTCTACCCCTGCCACGAAGCCATGAATCTGG
TGTGGATGACGTTCTTCTCAGGGCCTGGGGGAATATATCTTTATGGGAGC
ACGTGGAAGAATTTTTGGTGTTGATGCGACTGCCGCTGAAGGCCTCGTGC
GAGACCATGGATCGCTTCAATGTTATGGAGCAGCTTCGAGAAGAATGGGG
GGTGGTGGCGAAGTGGGAGTTTGACCACGGGCGAGCTCCGTATGGGTTGG
TTGAACGGCTCGTCGCGTCCTGCCATGCCATCGGGAACGTGGTGACGGGC
ACGTGCTGGAGGGGAGGTGCTTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig966:83478..83800-

>mRNA_A-nodosum_M_contig966.1.1 ID=mRNA_A-nodosum_M_contig966.1.1|Name=mRNA_A-nodosum_M_contig966.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=321bp|location=Sequence derived from alignment at A-nodosum_M_contig966:83478..83800- (Ascophyllum nodosum dioecious)
GCTTGTCAAGCTTGGCATTTTCTACCCCTGCCACGAAGCCATGAATCTGG
TGTGGATGACGTTCTTCTCAGGGCCTGGGGGAATATATCTTTATGGGAGC
ACGTGGAAGAATTTTTGGTGTTGATGCGACTGCCGCTGAAGGCCTCGTGC
GAGACCATGGATCGCTTCAATGTTATGGAGCAGCTTCGAGAAGAATGGGG
GGTGGTGGCGAAGTGGGAGTTTGACCACGGGCGAGCTCCGTATGGGTTGG
TTGAACGGCTCGTCGCGTCCTGCCATGCCATCGGGAACGTGGTGACGGGC
ACGTGCTGGAGGGGAGGTGCT
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